Wall clock time and date at job start Tue Mar 31 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38164 * 119.91757 * 2 1 4 4 C 1.38091 * 120.20606 * 180.02562 * 3 2 1 5 5 C 1.39447 * 120.04524 * 359.97438 * 4 3 2 6 6 C 1.48396 * 120.08036 * 180.02562 * 5 4 3 7 7 C 1.39765 * 120.53747 * 0.30359 * 6 5 4 8 8 C 1.38416 * 118.31299 * 180.26196 * 7 6 5 9 9 C 1.38316 * 119.28254 * 359.43965 * 8 7 6 10 10 N 1.31892 * 121.02611 * 0.29483 * 9 8 7 11 11 C 1.31740 * 121.85320 * 359.97438 * 10 9 8 12 12 C 1.39150 * 119.83955 * 0.27538 * 5 4 3 13 13 C 1.38834 * 119.79443 * 359.47034 * 12 5 4 14 14 N 1.39536 * 120.02433 * 180.22813 * 13 12 5 15 15 C 1.34778 * 120.00121 * 24.89118 * 14 13 12 16 16 O 1.21744 * 119.99795 * 5.50934 * 15 14 13 17 17 C 1.46166 * 120.00316 * 185.52056 * 15 14 13 18 18 H 1.07997 * 119.99693 * 359.97438 * 17 15 14 19 19 C 1.40121 * 119.99749 * 179.97438 * 17 15 14 20 20 N 1.30634 * 120.00295 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99482 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47177 * 59.99862 * 21 19 17 23 23 H 1.48497 * 109.47030 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47022 * 299.99654 * 21 19 17 25 25 H 1.09004 * 109.47267 * 90.00038 * 1 2 3 26 26 H 1.09001 * 109.47135 * 209.99488 * 1 2 3 27 27 H 1.08997 * 109.47173 * 329.99634 * 1 2 3 28 28 H 1.08001 * 119.89955 * 0.02757 * 3 2 1 29 29 H 1.08006 * 119.97811 * 180.02562 * 4 3 2 30 30 H 1.08001 * 120.84478 * 359.97438 * 7 6 5 31 31 H 1.07995 * 120.35654 * 179.71374 * 8 7 6 32 32 H 1.07996 * 119.48504 * 180.27703 * 9 8 7 33 33 H 1.07997 * 119.70153 * 179.97438 * 11 10 9 34 34 H 1.08006 * 120.09847 * 179.70627 * 12 5 4 35 35 H 0.97003 * 120.00046 * 204.88179 * 14 13 12 36 36 H 0.97004 * 119.99719 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1975 0.0000 4 6 3.5770 1.2045 -0.0005 5 6 4.2812 0.0009 -0.0005 6 6 5.7652 0.0075 -0.0005 7 6 6.4700 1.2144 0.0058 8 6 7.8533 1.1668 0.0000 9 6 8.4880 -0.0621 -0.0001 10 7 7.7957 -1.1848 -0.0005 11 6 6.4783 -1.1892 -0.0003 12 6 3.5892 -1.2063 -0.0058 13 6 2.2008 -1.2055 0.0001 14 7 1.5020 -2.4133 -0.0003 15 6 2.0830 -3.5282 0.4853 16 8 3.1770 -3.4630 1.0154 17 6 1.3997 -4.8157 0.3754 18 1 0.4291 -4.8734 -0.0946 19 6 2.0040 -5.9748 0.8799 20 7 3.1783 -5.9050 1.4480 21 14 1.1304 -7.6201 0.7400 22 1 0.8919 -7.9338 -0.6917 23 1 1.9739 -8.6815 1.3460 24 1 -0.1693 -7.5528 1.4552 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6531 2.1311 0.0005 29 1 4.1119 2.1428 -0.0001 30 1 5.9485 2.1602 0.0105 31 1 8.4308 2.0794 0.0000 32 1 9.5672 -0.1031 -0.0001 33 1 5.9464 -2.1291 -0.0011 34 1 4.1304 -2.1409 -0.0106 35 1 0.5979 -2.4504 -0.3500 36 1 3.5968 -6.7076 1.7969 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336464202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:16 Heat of formation + Delta-G solvation = 17.521091 kcal Electronic energy + Delta-G solvation = -20885.407314 eV Core-core repulsion = 17719.975701 eV Total energy + Delta-G solvation = -3165.431613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15540 -39.16923 -37.04426 -34.22944 -32.98731 -32.31235 -31.99719 -30.25541 -29.23752 -26.66027 -25.95461 -23.73116 -22.99673 -21.92943 -20.58340 -19.53520 -17.67752 -17.25398 -16.31139 -15.98812 -15.52668 -14.98830 -14.70060 -14.42352 -14.06655 -13.73001 -13.50129 -13.28584 -13.20890 -12.83202 -12.58261 -12.51158 -12.04087 -11.71415 -11.59942 -11.37510 -11.12650 -10.88691 -10.81419 -10.64338 -10.39579 -9.93071 -9.48082 -9.21152 -9.14844 -8.91957 -7.91721 -7.61892 -7.04416 -6.38634 -4.87245 0.87522 1.42917 2.02400 2.21305 3.06663 3.12184 3.13947 3.92643 3.95961 4.30244 4.49441 4.55806 4.65375 4.89721 4.98953 5.08773 5.18563 5.28716 5.42865 5.54512 5.58388 5.59704 5.82565 5.87108 5.91329 6.02414 6.18928 6.20852 6.36065 6.41724 6.57022 6.79643 6.93431 7.03781 7.09878 7.23309 7.35839 7.67263 7.99832 8.10646 8.20203 8.80162 9.14066 10.31335 10.50900 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.005241 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.095452 B = 5341.583351 C = 7062.013954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.147 4.147 3 C -0.097 4.097 4 C -0.155 4.155 5 C -0.040 4.040 6 C -0.078 4.078 7 C -0.076 4.076 8 C -0.177 4.177 9 C 0.084 3.916 10 N -0.481 5.481 11 C 0.114 3.886 12 C -0.123 4.123 13 C 0.197 3.803 14 N -0.692 5.692 15 C 0.540 3.460 16 O -0.557 6.557 17 C -0.538 4.538 18 H 0.072 0.928 19 C 0.087 3.913 20 N -0.756 5.756 21 Si 0.913 3.087 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.267 1.267 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.394 0.606 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 12.655 -3.789 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C -0.116 4.116 4 C -0.175 4.175 5 C -0.041 4.041 6 C -0.080 4.080 7 C -0.102 4.102 8 C -0.197 4.197 9 C -0.073 4.073 10 N -0.189 5.189 11 C -0.043 4.043 12 C -0.144 4.144 13 C 0.097 3.903 14 N -0.334 5.334 15 C 0.348 3.652 16 O -0.439 6.439 17 C -0.573 4.573 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.384 5.384 21 Si 0.737 3.263 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.191 1.191 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.184 0.816 34 H 0.175 0.825 35 H 0.228 0.772 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.350 11.646 -3.302 12.331 hybrid contribution -1.351 0.111 -0.144 1.363 sum 0.999 11.757 -3.446 12.293 Atomic orbital electron populations 1.20637 0.91642 1.02542 1.01597 1.19674 0.95729 0.92128 1.07539 1.20525 0.93629 0.96468 1.00929 1.20838 0.93967 0.96518 1.06128 1.18442 0.90255 0.93578 1.01835 1.19876 0.93669 0.94219 1.00278 1.21630 0.93974 0.98008 0.96540 1.22007 0.95044 0.99460 1.03152 1.22772 1.00241 0.87963 0.96293 1.67706 1.08675 1.30892 1.11641 1.23233 0.89360 0.98416 0.93276 1.21740 0.93206 0.98749 1.00721 1.17746 0.91417 0.86145 0.95006 1.44200 1.18007 1.07160 1.64018 1.18397 0.86053 0.82604 0.78187 1.90581 1.21719 1.85010 1.46633 1.20817 1.05474 0.90343 1.40698 0.91018 1.25730 0.94353 1.00451 0.92917 1.69957 1.12742 1.29875 1.25779 0.86341 0.79855 0.80765 0.79365 1.19086 1.20334 1.19135 0.91850 0.91634 0.91919 0.86566 0.86870 0.84825 0.85075 0.83164 0.81601 0.82493 0.77208 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.44 36.01 0.34 -1.10 16 2 C -0.15 -2.47 5.90 -104.33 -0.62 -3.09 16 3 C -0.10 -1.46 9.68 -39.66 -0.38 -1.84 16 4 C -0.15 -2.40 9.44 -39.19 -0.37 -2.77 16 5 C -0.04 -0.72 5.87 -104.93 -0.62 -1.33 16 6 C -0.08 -1.33 5.89 -104.75 -0.62 -1.95 16 7 C -0.08 -1.03 9.54 -38.95 -0.37 -1.40 16 8 C -0.18 -2.13 10.10 -39.49 -0.40 -2.53 16 9 C 0.08 1.15 11.17 -17.50 -0.20 0.96 16 10 N -0.48 -8.40 10.35 -12.97 -0.13 -8.54 16 11 C 0.11 2.11 10.60 -17.19 -0.18 1.93 16 12 C -0.12 -2.63 8.10 -39.02 -0.32 -2.94 16 13 C 0.20 4.05 6.40 -83.81 -0.54 3.51 16 14 N -0.69 -15.10 4.96 -11.23 -0.06 -15.15 16 15 C 0.54 14.50 7.54 -13.08 -0.10 14.40 16 16 O -0.56 -16.67 12.17 5.15 0.06 -16.61 16 17 C -0.54 -14.28 9.54 -35.70 -0.34 -14.62 16 18 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 19 C 0.09 2.30 5.50 -17.35 -0.10 2.21 16 20 N -0.76 -21.49 11.82 55.55 0.66 -20.83 16 21 Si 0.91 19.17 29.56 -169.99 -5.02 14.14 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.92 6.97 -51.93 -0.36 0.56 16 27 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.11 1.41 6.27 -52.48 -0.33 1.08 16 30 H 0.13 1.46 6.32 -52.49 -0.33 1.13 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.17 3.35 6.23 -52.49 -0.33 3.02 16 34 H 0.16 3.80 3.95 -52.48 -0.21 3.59 16 35 H 0.39 7.37 7.36 -40.82 -0.30 7.07 16 36 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 LS Contribution 308.52 15.07 4.65 4.65 Total: -1.00 -32.27 308.52 -8.16 -40.43 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -3.51 Total: 12.49 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -4.80 Total: -10.57 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.47 Total: -44.53 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.06 Total: -16.61 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.27 -8.16 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336464202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.947 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds