Wall clock time and date at job start Tue Mar 31 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38164 * 119.91757 * 2 1 4 4 C 1.38091 * 120.20606 * 180.02562 * 3 2 1 5 5 C 1.39447 * 120.04524 * 359.97438 * 4 3 2 6 6 C 1.48396 * 120.08036 * 180.02562 * 5 4 3 7 7 C 1.39765 * 120.53747 * 0.30359 * 6 5 4 8 8 C 1.38416 * 118.31299 * 180.26196 * 7 6 5 9 9 C 1.38316 * 119.28254 * 359.43965 * 8 7 6 10 10 N 1.31892 * 121.02611 * 0.29483 * 9 8 7 11 11 C 1.31740 * 121.85320 * 359.97438 * 10 9 8 12 12 C 1.39150 * 119.83955 * 0.27538 * 5 4 3 13 13 C 1.38834 * 119.79443 * 359.47034 * 12 5 4 14 14 N 1.39536 * 120.02433 * 180.22813 * 13 12 5 15 15 C 1.34778 * 120.00121 * 24.89118 * 14 13 12 16 16 O 1.21744 * 119.99795 * 5.50934 * 15 14 13 17 17 C 1.46166 * 120.00316 * 185.52056 * 15 14 13 18 18 H 1.07997 * 119.99693 * 359.97438 * 17 15 14 19 19 C 1.40121 * 119.99749 * 179.97438 * 17 15 14 20 20 N 1.30634 * 120.00295 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99482 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47177 * 59.99862 * 21 19 17 23 23 H 1.48497 * 109.47030 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47022 * 299.99654 * 21 19 17 25 25 H 1.09004 * 109.47267 * 90.00038 * 1 2 3 26 26 H 1.09001 * 109.47135 * 209.99488 * 1 2 3 27 27 H 1.08997 * 109.47173 * 329.99634 * 1 2 3 28 28 H 1.08001 * 119.89955 * 0.02757 * 3 2 1 29 29 H 1.08006 * 119.97811 * 180.02562 * 4 3 2 30 30 H 1.08001 * 120.84478 * 359.97438 * 7 6 5 31 31 H 1.07995 * 120.35654 * 179.71374 * 8 7 6 32 32 H 1.07996 * 119.48504 * 180.27703 * 9 8 7 33 33 H 1.07997 * 119.70153 * 179.97438 * 11 10 9 34 34 H 1.08006 * 120.09847 * 179.70627 * 12 5 4 35 35 H 0.97003 * 120.00046 * 204.88179 * 14 13 12 36 36 H 0.97004 * 119.99719 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1975 0.0000 4 6 3.5770 1.2045 -0.0005 5 6 4.2812 0.0009 -0.0005 6 6 5.7652 0.0075 -0.0005 7 6 6.4700 1.2144 0.0058 8 6 7.8533 1.1668 0.0000 9 6 8.4880 -0.0621 -0.0001 10 7 7.7957 -1.1848 -0.0005 11 6 6.4783 -1.1892 -0.0003 12 6 3.5892 -1.2063 -0.0058 13 6 2.2008 -1.2055 0.0001 14 7 1.5020 -2.4133 -0.0003 15 6 2.0830 -3.5282 0.4853 16 8 3.1770 -3.4630 1.0154 17 6 1.3997 -4.8157 0.3754 18 1 0.4291 -4.8734 -0.0946 19 6 2.0040 -5.9748 0.8799 20 7 3.1783 -5.9050 1.4480 21 14 1.1304 -7.6201 0.7400 22 1 0.8919 -7.9338 -0.6917 23 1 1.9739 -8.6815 1.3460 24 1 -0.1693 -7.5528 1.4552 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6531 2.1311 0.0005 29 1 4.1119 2.1428 -0.0001 30 1 5.9485 2.1602 0.0105 31 1 8.4308 2.0794 0.0000 32 1 9.5672 -0.1031 -0.0001 33 1 5.9464 -2.1291 -0.0011 34 1 4.1304 -2.1409 -0.0106 35 1 0.5979 -2.4504 -0.3500 36 1 3.5968 -6.7076 1.7969 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336464202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:16 Heat of formation + Delta-G solvation = -3.813930 kcal Electronic energy + Delta-G solvation = -20886.332470 eV Core-core repulsion = 17719.975701 eV Total energy + Delta-G solvation = -3166.356769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46004 -40.61955 -38.77672 -35.77730 -34.80207 -34.02980 -33.16698 -31.45134 -30.78663 -28.41332 -27.36859 -25.04327 -24.19653 -23.43399 -22.05000 -21.15672 -19.45758 -18.53880 -17.72664 -17.65055 -17.10229 -16.32571 -16.12244 -15.84471 -15.62193 -15.03184 -14.87659 -14.67069 -14.47462 -14.38729 -14.16543 -13.89875 -13.23024 -13.15081 -13.02540 -12.79722 -12.77965 -12.68859 -12.19669 -12.10932 -12.06350 -11.38819 -10.97979 -10.75659 -10.42263 -10.33114 -9.86392 -9.10991 -8.59326 -8.38106 -6.97142 -0.36664 0.28718 0.61990 0.92695 1.37352 1.40956 1.52937 2.18732 2.34882 2.73884 2.90249 3.12912 3.43810 3.56731 3.72810 3.84287 3.98908 4.06429 4.16987 4.20220 4.36636 4.52610 4.65160 4.75392 4.83621 4.86852 4.90540 5.07466 5.14731 5.20476 5.22376 5.29033 5.47440 5.63415 5.71518 5.75915 5.80461 5.98223 6.14837 6.41047 6.75178 7.00684 7.31415 8.32488 8.54071 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.005241 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.095452 B = 5341.583351 C = 7062.013954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.141 4.141 3 C -0.090 4.090 4 C -0.139 4.139 5 C -0.050 4.050 6 C -0.097 4.097 7 C -0.068 4.068 8 C -0.155 4.155 9 C 0.077 3.923 10 N -0.516 5.516 11 C 0.079 3.921 12 C -0.161 4.161 13 C 0.155 3.845 14 N -0.686 5.686 15 C 0.525 3.475 16 O -0.602 6.602 17 C -0.566 4.566 18 H 0.093 0.907 19 C 0.030 3.970 20 N -0.813 5.813 21 Si 1.000 3.000 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.251 1.251 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.166 0.834 29 H 0.158 0.842 30 H 0.173 0.827 31 H 0.184 0.816 32 H 0.186 0.814 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.407 0.593 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 16.549 -4.386 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.144 4.144 3 C -0.108 4.108 4 C -0.158 4.158 5 C -0.051 4.051 6 C -0.099 4.099 7 C -0.093 4.093 8 C -0.174 4.174 9 C -0.079 4.079 10 N -0.225 5.225 11 C -0.077 4.077 12 C -0.182 4.182 13 C 0.057 3.943 14 N -0.330 5.330 15 C 0.332 3.668 16 O -0.488 6.488 17 C -0.601 4.601 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.442 5.442 21 Si 0.819 3.181 22 H -0.177 1.177 23 H -0.199 1.199 24 H -0.175 1.175 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.183 0.817 29 H 0.176 0.824 30 H 0.191 0.809 31 H 0.202 0.798 32 H 0.203 0.797 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.243 0.757 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.385 15.591 -3.925 16.137 hybrid contribution -0.918 -0.870 0.008 1.265 sum 0.467 14.721 -3.917 15.241 Atomic orbital electron populations 1.20720 0.89010 1.03360 1.03157 1.20113 0.97696 0.91148 1.05473 1.21104 0.93684 0.97404 0.98583 1.21343 0.94542 0.96710 1.03220 1.18662 0.91155 0.93520 1.01791 1.19924 0.93290 0.95040 1.01645 1.22070 0.94799 0.97643 0.94781 1.22547 0.94682 1.00518 0.99688 1.23500 1.01816 0.87748 0.94884 1.67601 1.08230 1.33634 1.13010 1.22729 0.90261 0.97916 0.96752 1.21516 0.94065 0.98616 1.03987 1.18069 0.91375 0.86926 0.97908 1.43697 1.18396 1.06914 1.63947 1.18767 0.85686 0.84282 0.78025 1.90566 1.23519 1.86175 1.48504 1.21380 1.06498 0.90920 1.41343 0.88890 1.27006 0.94834 1.05135 0.91632 1.70147 1.15114 1.31375 1.27525 0.85026 0.78627 0.74439 0.79994 1.17749 1.19946 1.17516 0.89790 0.92970 0.88916 0.81682 0.82420 0.80936 0.79849 0.79681 0.86256 0.87338 0.75742 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.57 9.44 71.24 0.67 -1.90 16 2 C -0.14 -4.55 5.90 -19.68 -0.12 -4.67 16 3 C -0.09 -2.34 9.68 22.22 0.21 -2.13 16 4 C -0.14 -3.87 9.44 22.53 0.21 -3.66 16 5 C -0.05 -1.86 5.87 -20.06 -0.12 -1.98 16 6 C -0.10 -3.38 5.89 -19.95 -0.12 -3.49 16 7 C -0.07 -1.62 9.54 22.68 0.22 -1.40 16 8 C -0.16 -3.11 10.10 22.33 0.23 -2.89 16 9 C 0.08 2.00 11.17 84.70 0.95 2.95 16 10 N -0.52 -19.12 10.35 -194.96 -2.02 -21.13 16 11 C 0.08 3.27 10.60 84.96 0.90 4.17 16 12 C -0.16 -7.53 8.10 22.63 0.18 -7.34 16 13 C 0.16 6.73 6.40 38.26 0.25 6.98 16 14 N -0.69 -32.07 4.96 -307.63 -1.53 -33.60 16 15 C 0.53 30.64 7.54 86.30 0.65 31.29 16 16 O -0.60 -40.02 12.17 -4.49 -0.05 -40.08 16 17 C -0.57 -31.71 9.54 24.79 0.24 -31.48 16 18 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 19 C 0.03 1.68 5.50 85.33 0.47 2.15 16 20 N -0.81 -49.69 11.82 21.85 0.26 -49.43 16 21 Si 1.00 40.50 29.56 68.60 2.03 42.52 16 22 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.41 6.97 -2.39 -0.02 1.40 16 27 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 28 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.16 2.94 6.27 -2.91 -0.02 2.92 16 30 H 0.17 2.71 6.32 -2.91 -0.02 2.69 16 31 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.12 5.87 6.23 -2.91 -0.02 5.85 16 34 H 0.11 6.14 3.95 -2.91 -0.01 6.12 16 35 H 0.41 16.00 7.36 -92.71 -0.68 15.31 16 36 H 0.28 15.44 8.29 -92.70 -0.77 14.67 16 Total: -1.00 -82.16 308.52 3.97 -78.19 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.46 Total: 36.93 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 4.82 Total: -13.40 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -3.28 Total: -104.17 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.05 Total: -40.08 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -82.16 3.97 -78.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336464202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.380 kcal (2) G-P(sol) polarization free energy of solvation -82.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds