Wall clock time and date at job start Tue Mar 31 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86804 * 119.99866 * 2 1 4 4 H 1.48505 * 109.46820 * 240.00157 * 3 2 1 5 5 H 1.48500 * 109.47303 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47257 * 119.99805 * 3 2 1 7 7 C 1.39038 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00389 * 180.02562 * 7 2 1 9 9 N 1.36881 * 119.99683 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99898 * 179.97438 * 9 7 2 11 11 O 1.21591 * 120.00169 * 0.02562 * 10 9 7 12 12 C 1.47736 * 120.00011 * 179.97438 * 10 9 7 13 13 C 1.39697 * 120.11506 * 0.02562 * 12 10 9 14 14 C 1.37966 * 120.00045 * 179.97438 * 13 12 10 15 15 C 1.38258 * 120.23807 * 0.02562 * 14 13 12 16 16 C 1.39015 * 120.22792 * 359.97438 * 15 14 13 17 17 N 1.39751 * 120.00249 * 179.97438 * 16 15 14 18 18 C 1.39703 * 120.00012 * 149.56453 * 17 16 15 19 19 C 1.38927 * 120.07803 * 329.72238 * 18 17 16 20 20 C 1.38102 * 119.92259 * 179.72139 * 19 18 17 21 21 C 1.38288 * 120.07648 * 0.52878 * 20 19 18 22 22 C 1.38290 * 120.15276 * 359.77014 * 21 20 19 23 23 C 1.38102 * 120.07844 * 359.95284 * 22 21 20 24 24 C 1.38674 * 120.00136 * 359.97438 * 16 15 14 25 25 H 0.96999 * 119.99879 * 0.02562 * 1 2 3 26 26 H 0.96999 * 120.00127 * 359.97438 * 9 7 2 27 27 H 1.07998 * 119.99896 * 0.02562 * 13 12 10 28 28 H 1.08002 * 119.88355 * 179.97438 * 14 13 12 29 29 H 1.08000 * 119.88179 * 179.72087 * 15 14 13 30 30 H 0.97001 * 119.99568 * 329.57123 * 17 16 15 31 31 H 1.08004 * 120.04029 * 359.97438 * 19 18 17 32 32 H 1.07996 * 119.96211 * 180.29252 * 20 19 18 33 33 H 1.08001 * 119.92730 * 179.74282 * 21 20 19 34 34 H 1.08003 * 119.96464 * 179.97438 * 22 21 20 35 35 H 1.07992 * 120.04136 * 180.02562 * 23 22 21 36 36 H 1.07996 * 120.12210 * 179.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1013 1.6964 -1.2126 5 1 1.2826 2.7465 -0.0006 6 1 3.1013 1.6965 1.2125 7 6 2.0089 -1.2041 0.0005 8 1 3.0889 -1.2040 0.0010 9 7 1.3245 -2.3895 0.0005 10 6 1.9984 -3.5566 0.0005 11 8 3.2144 -3.5566 0.0010 12 6 1.2598 -4.8361 0.0011 13 6 -0.1372 -4.8390 0.0011 14 6 -0.8246 -6.0352 0.0011 15 6 -0.1358 -7.2340 0.0016 16 6 1.2543 -7.2425 0.0016 17 7 1.9457 -8.4570 0.0027 18 6 3.1979 -8.5484 -0.6101 19 6 3.4992 -7.7439 -1.7018 20 6 4.7400 -7.8328 -2.3016 21 6 5.6782 -8.7293 -1.8234 22 6 5.3794 -9.5361 -0.7408 23 6 4.1426 -9.4483 -0.1326 24 6 1.9550 -6.0458 0.0006 25 1 -0.4850 0.8400 -0.0004 26 1 0.3545 -2.3895 0.0005 27 1 -0.6790 -3.9048 0.0003 28 1 -1.9046 -6.0352 0.0015 29 1 -0.6797 -8.1670 0.0062 30 1 1.5562 -9.2364 0.4289 31 1 2.7654 -7.0467 -2.0786 32 1 4.9766 -7.2043 -3.1473 33 1 6.6463 -8.7998 -2.2969 34 1 6.1142 -10.2354 -0.3701 35 1 3.9100 -10.0784 0.7131 36 1 3.0350 -6.0501 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339924021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:31 Heat of formation + Delta-G solvation = 18.643712 kcal Electronic energy + Delta-G solvation = -20564.893613 eV Core-core repulsion = 17399.510680 eV Total energy + Delta-G solvation = -3165.382932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05852 -38.80482 -37.49623 -35.14841 -34.08142 -31.52202 -31.00380 -30.59506 -30.02379 -27.93485 -25.32506 -23.24153 -22.67375 -22.28525 -21.01830 -19.50941 -18.23686 -17.52835 -17.02601 -16.20937 -15.64976 -15.36693 -14.80904 -14.59691 -14.22984 -14.01204 -13.79877 -13.51962 -13.42952 -13.33634 -12.74769 -12.70412 -12.22734 -11.64778 -11.59618 -11.42322 -11.15626 -11.07263 -10.90908 -10.50063 -10.46024 -10.28421 -9.61823 -8.88366 -8.73286 -8.50608 -8.49333 -8.07775 -7.19305 -6.56315 -3.89127 1.25166 1.44719 1.50941 1.91413 3.16532 3.20780 3.25156 3.32849 3.68392 3.93351 4.09022 4.51803 4.84639 4.92888 5.00530 5.19519 5.23034 5.29498 5.30181 5.45616 5.52827 5.64941 5.68427 5.83930 5.87059 6.06891 6.13184 6.29526 6.37529 6.46785 6.59722 6.65713 6.79115 6.87662 6.92397 7.11281 7.42620 7.52493 7.70236 7.96250 8.50940 9.06030 9.42389 9.98576 10.60532 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020713 B = 0.004119 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.476646 B = 6795.526251 C = 7911.711122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.295 4.295 8 H 0.107 0.893 9 N -0.541 5.541 10 C 0.463 3.537 11 O -0.595 6.595 12 C -0.062 4.062 13 C -0.134 4.134 14 C -0.093 4.093 15 C -0.167 4.167 16 C 0.166 3.834 17 N -0.689 5.689 18 C 0.186 3.814 19 C -0.157 4.157 20 C -0.083 4.083 21 C -0.159 4.159 22 C -0.090 4.090 23 C -0.173 4.173 24 C -0.118 4.118 25 H 0.276 0.724 26 H 0.394 0.606 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.406 0.594 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -16.901 -1.535 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.425 4.425 8 H 0.125 0.875 9 N -0.175 5.175 10 C 0.251 3.749 11 O -0.482 6.482 12 C -0.067 4.067 13 C -0.154 4.154 14 C -0.111 4.111 15 C -0.189 4.189 16 C 0.070 3.930 17 N -0.313 5.313 18 C 0.088 3.912 19 C -0.178 4.178 20 C -0.102 4.102 21 C -0.178 4.178 22 C -0.109 4.109 23 C -0.194 4.194 24 C -0.141 4.141 25 H 0.086 0.914 26 H 0.229 0.771 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.242 0.758 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.378 -16.580 -1.571 16.711 hybrid contribution -0.463 0.555 0.236 0.760 sum 0.915 -16.025 -1.335 16.106 Atomic orbital electron populations 1.69581 1.06135 1.28844 1.48380 1.25379 0.95688 1.00079 0.96784 0.85839 0.78820 0.79860 0.79327 1.19631 1.20768 1.19636 1.19801 0.93736 0.82160 1.46763 0.87479 1.41891 1.09524 1.04679 1.61406 1.17734 0.87495 0.83285 0.86386 1.90602 1.13243 1.86993 1.57391 1.20169 0.93251 0.94379 0.98872 1.21357 0.93488 0.98516 1.02082 1.20791 0.99484 0.91630 0.99219 1.20765 0.91954 0.98456 1.07715 1.17565 0.90822 0.85294 0.99342 1.41988 1.17761 1.10408 1.61134 1.17743 0.85379 0.96424 0.91641 1.21069 0.98615 1.02391 0.95746 1.20999 0.92809 0.97174 0.99210 1.21013 0.99805 0.98289 0.98719 1.20876 0.95774 0.98613 0.95639 1.20767 0.93595 1.03161 1.01894 1.21000 1.00720 0.89725 1.02639 0.91379 0.77065 0.85495 0.85819 0.86341 0.75794 0.85557 0.85869 0.86341 0.86174 0.86211 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.66 13.05 55.50 0.72 -22.94 16 2 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 3 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.29 -8.22 9.68 -15.00 -0.15 -8.37 16 8 H 0.11 3.11 7.15 -52.49 -0.38 2.73 16 9 N -0.54 -14.08 5.23 -11.87 -0.06 -14.14 16 10 C 0.46 11.74 7.72 -12.38 -0.10 11.65 16 11 O -0.60 -17.05 15.92 5.29 0.08 -16.96 16 12 C -0.06 -1.28 5.87 -104.99 -0.62 -1.90 16 13 C -0.13 -2.34 9.54 -39.14 -0.37 -2.72 16 14 C -0.09 -1.32 10.02 -39.67 -0.40 -1.71 16 15 C -0.17 -2.25 9.95 -39.29 -0.39 -2.64 16 16 C 0.17 2.52 5.91 -83.80 -0.50 2.02 16 17 N -0.69 -8.75 5.45 -8.44 -0.05 -8.80 16 18 C 0.19 2.53 5.91 -83.76 -0.50 2.03 16 19 C -0.16 -2.31 7.94 -39.38 -0.31 -2.62 16 20 C -0.08 -1.10 10.04 -39.61 -0.40 -1.50 16 21 C -0.16 -1.86 10.04 -39.54 -0.40 -2.25 16 22 C -0.09 -1.00 10.04 -39.61 -0.40 -1.40 16 23 C -0.17 -2.03 9.96 -39.37 -0.39 -2.42 16 24 C -0.12 -2.22 7.48 -38.94 -0.29 -2.52 16 25 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.39 9.68 5.92 -40.82 -0.24 9.44 16 27 H 0.13 2.19 6.40 -52.49 -0.34 1.86 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.41 3.96 8.91 -40.82 -0.36 3.59 16 31 H 0.13 2.01 6.66 -52.48 -0.35 1.66 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.13 2.77 6.25 -52.49 -0.33 2.44 16 LS Contribution 314.05 15.07 4.73 4.73 Total: -1.00 -31.38 314.05 -8.55 -39.93 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -3.67 Total: 16.39 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -5.29 Total: -13.81 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.62 Total: -45.87 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.08 Total: -16.96 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.38 -8.55 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339924021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.569 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds