Wall clock time and date at job start Tue Mar 31 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48506 * 109.47211 * 269.99855 * 3 2 1 5 5 H 1.48503 * 109.47160 * 30.00011 * 3 2 1 6 6 H 1.48502 * 109.47433 * 149.99884 * 3 2 1 7 7 C 1.38798 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00529 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99961 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47090 * 180.02562 * 10 9 7 12 12 N 1.31126 * 126.55484 * 90.01609 * 11 10 9 13 13 C 1.34492 * 105.61910 * 179.97438 * 12 11 10 14 14 C 1.50703 * 126.29014 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47227 * 270.05374 * 14 13 12 16 16 C 1.52998 * 109.47069 * 294.99581 * 15 14 13 17 17 C 1.52999 * 109.47069 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.47362 * 60.00253 * 17 16 15 19 19 C 1.53002 * 109.47129 * 300.00313 * 18 17 16 20 20 C 1.52999 * 109.47254 * 59.99621 * 19 18 17 21 21 N 1.29948 * 107.42516 * 0.02562 * 13 12 11 22 22 O 1.21303 * 110.24669 * 359.97438 * 21 13 12 23 23 H 0.97002 * 119.99754 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46748 * 60.00102 * 10 9 7 25 25 H 1.08999 * 109.47187 * 300.00322 * 10 9 7 26 26 H 1.09002 * 109.46770 * 30.05485 * 14 13 12 27 27 H 1.08999 * 109.47188 * 150.05087 * 14 13 12 28 28 H 1.08993 * 109.47264 * 54.99859 * 15 14 13 29 29 H 1.09000 * 109.47681 * 300.00403 * 16 15 14 30 30 H 1.09005 * 109.46759 * 60.00356 * 16 15 14 31 31 H 1.09004 * 109.47414 * 299.99792 * 17 16 15 32 32 H 1.09006 * 109.47197 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47801 * 179.97438 * 18 17 16 34 34 H 1.09010 * 109.46923 * 59.99698 * 18 17 16 35 35 H 1.08998 * 109.46469 * 299.99233 * 19 18 17 36 36 H 1.08996 * 109.47223 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.46938 * 180.02562 * 20 19 18 38 38 H 1.08993 * 109.47264 * 60.00211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0013 11 6 1.9873 -5.3027 0.0018 12 7 1.7132 -6.0343 -1.0514 13 6 1.2733 -7.2108 -0.5704 14 6 0.8284 -8.3975 -1.3859 15 6 -0.6728 -8.2928 -1.6618 16 6 -1.4421 -8.3965 -0.3434 17 6 -2.9434 -8.2925 -0.6194 18 6 -3.3709 -9.4292 -1.5500 19 6 -2.6015 -9.3256 -2.8684 20 6 -1.1002 -9.4296 -2.5924 21 7 1.3013 -7.1359 0.7266 22 8 1.7086 -6.0479 1.0756 23 1 -0.4850 0.8401 -0.0004 24 1 3.1250 -3.7310 0.8908 25 1 3.1237 -3.7318 -0.8891 26 1 1.3714 -8.4129 -2.3310 27 1 1.0334 -9.3149 -0.8341 28 1 -0.8894 -7.3349 -2.1345 29 1 -1.2255 -9.3544 0.1294 30 1 -1.1372 -7.5869 0.3197 31 1 -3.1604 -7.3346 -1.0923 32 1 -3.4915 -8.3659 0.3200 33 1 -4.4405 -9.3554 -1.7463 34 1 -3.1538 -10.3870 -1.0770 35 1 -2.8186 -8.3678 -3.3413 36 1 -2.9057 -10.1356 -3.5312 37 1 -0.5522 -9.3553 -3.5317 38 1 -0.8832 -10.3873 -2.1195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341589575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:44 Heat of formation + Delta-G solvation = 27.821498 kcal Electronic energy + Delta-G solvation = -19448.739278 eV Core-core repulsion = 16419.198276 eV Total energy + Delta-G solvation = -3029.541002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.19012 -38.91154 -35.73656 -33.77806 -32.56929 -31.94463 -30.82858 -28.47767 -27.24119 -25.63147 -23.46788 -22.61298 -22.03000 -20.67168 -19.81423 -17.91615 -17.78430 -16.83504 -15.57953 -15.02460 -14.91192 -14.49902 -14.45951 -14.25013 -14.08001 -13.82174 -13.13597 -12.92084 -12.71317 -12.28703 -12.26755 -12.03195 -11.68465 -11.31608 -11.22239 -11.16292 -11.11729 -11.07684 -10.89351 -10.64355 -10.55894 -10.30073 -10.14451 -10.06804 -9.34219 -9.18577 -8.53882 -6.73574 -6.35951 -4.10401 1.42233 2.45279 3.09213 3.17101 3.22454 3.25679 3.43922 3.87653 4.07227 4.29206 4.56331 4.61884 4.66864 4.99818 5.01920 5.07697 5.18614 5.22603 5.31369 5.36653 5.41790 5.48196 5.50773 5.57953 5.66581 5.76532 5.82802 5.92040 5.96980 6.03386 6.08047 6.09237 6.17271 6.19869 6.28655 6.35734 6.40721 7.48310 8.22759 8.52722 9.10075 10.72048 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.003549 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.494912 B = 7887.163762 C = 8495.621091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.924 3.076 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.080 0.920 9 S -0.082 6.082 10 C -0.043 4.043 11 C 0.226 3.774 12 N -0.482 5.482 13 C 0.170 3.830 14 C -0.021 4.021 15 C -0.084 4.084 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.110 4.110 21 N -0.392 5.392 22 O 0.073 5.927 23 H 0.270 0.730 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 -17.241 -3.196 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.750 3.250 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.674 4.674 8 H 0.098 0.902 9 S 0.144 5.856 10 C -0.192 4.192 11 C 0.005 3.995 12 N -0.217 5.217 13 C -0.103 4.103 14 C -0.060 4.060 15 C -0.103 4.103 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.148 4.148 21 N -0.103 5.103 22 O 0.017 5.983 23 H 0.080 0.920 24 H 0.120 0.880 25 H 0.128 0.872 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.132 -18.077 -3.091 18.605 hybrid contribution 1.858 1.517 0.087 2.400 sum -1.275 -16.560 -3.004 16.879 Atomic orbital electron populations 1.70000 1.06031 1.27814 1.46363 1.25022 0.95118 0.99226 0.94138 0.86073 0.79401 0.81008 0.78502 1.20110 1.20679 1.19462 1.22714 0.94874 0.90082 1.59764 0.90174 1.85195 1.05257 0.98219 1.96953 1.21962 1.04359 0.85975 1.06863 1.28187 0.94125 0.96838 0.80312 1.71920 1.18759 1.02349 1.28636 1.25711 0.99931 0.96105 0.88516 1.20009 0.96515 0.91119 0.98374 1.21156 0.92317 1.00161 0.96681 1.21603 0.94794 1.02193 0.96646 1.21529 0.95906 0.98945 0.99399 1.21536 0.99367 0.98805 0.95890 1.21525 0.94972 1.01954 0.97252 1.21543 0.96103 0.98055 0.99090 1.74574 1.19092 1.00921 1.15689 1.85284 1.59210 1.18051 1.35800 0.91967 0.87997 0.87178 0.88826 0.89485 0.90243 0.91972 0.91824 0.91834 0.92064 0.92233 0.92179 0.91786 0.92080 0.91684 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.95 13.22 55.49 0.73 -24.21 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 20.55 29.55 -169.99 -5.02 15.53 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.53 -14.15 9.50 30.94 0.29 -13.86 16 8 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.08 -2.05 21.42 -107.50 -2.30 -4.36 16 10 C -0.04 -0.83 6.30 36.00 0.23 -0.60 16 11 C 0.23 4.25 7.77 -13.06 -0.10 4.15 16 12 N -0.48 -8.96 11.55 -9.87 -0.11 -9.08 16 13 C 0.17 2.79 6.68 -156.37 -1.05 1.75 16 14 C -0.02 -0.26 5.32 -27.88 -0.15 -0.41 16 15 C -0.08 -0.97 2.18 -90.62 -0.20 -1.16 16 16 C -0.11 -1.39 5.01 -26.73 -0.13 -1.53 16 17 C -0.12 -1.31 5.92 -26.74 -0.16 -1.47 16 18 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 19 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 20 C -0.11 -0.99 5.20 -26.73 -0.14 -1.13 16 21 N -0.39 -6.87 11.47 30.90 0.35 -6.52 16 22 O 0.07 1.35 11.31 18.10 0.20 1.56 16 23 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 25 H 0.11 2.03 8.14 -51.92 -0.42 1.61 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.95 6.84 -51.93 -0.36 0.59 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 328.00 15.07 4.94 4.94 Total: -1.00 -29.64 328.00 -8.84 -38.48 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.82 Total: -1.58 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.82 Total: -14.76 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.97 Total: -39.81 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.20 Total: 1.56 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.30 Total: -4.36 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.64 -8.84 -38.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341589575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.299 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds