Wall clock time and date at job start Tue Mar 31 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48506 * 109.47211 * 269.99855 * 3 2 1 5 5 H 1.48503 * 109.47160 * 30.00011 * 3 2 1 6 6 H 1.48502 * 109.47433 * 149.99884 * 3 2 1 7 7 C 1.38798 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00529 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99961 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47090 * 180.02562 * 10 9 7 12 12 N 1.31126 * 126.55484 * 90.01609 * 11 10 9 13 13 C 1.34492 * 105.61910 * 179.97438 * 12 11 10 14 14 C 1.50703 * 126.29014 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47227 * 270.05374 * 14 13 12 16 16 C 1.52998 * 109.47069 * 294.99581 * 15 14 13 17 17 C 1.52999 * 109.47069 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.47362 * 60.00253 * 17 16 15 19 19 C 1.53002 * 109.47129 * 300.00313 * 18 17 16 20 20 C 1.52999 * 109.47254 * 59.99621 * 19 18 17 21 21 N 1.29948 * 107.42516 * 0.02562 * 13 12 11 22 22 O 1.21303 * 110.24669 * 359.97438 * 21 13 12 23 23 H 0.97002 * 119.99754 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46748 * 60.00102 * 10 9 7 25 25 H 1.08999 * 109.47187 * 300.00322 * 10 9 7 26 26 H 1.09002 * 109.46770 * 30.05485 * 14 13 12 27 27 H 1.08999 * 109.47188 * 150.05087 * 14 13 12 28 28 H 1.08993 * 109.47264 * 54.99859 * 15 14 13 29 29 H 1.09000 * 109.47681 * 300.00403 * 16 15 14 30 30 H 1.09005 * 109.46759 * 60.00356 * 16 15 14 31 31 H 1.09004 * 109.47414 * 299.99792 * 17 16 15 32 32 H 1.09006 * 109.47197 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47801 * 179.97438 * 18 17 16 34 34 H 1.09010 * 109.46923 * 59.99698 * 18 17 16 35 35 H 1.08998 * 109.46469 * 299.99233 * 19 18 17 36 36 H 1.08996 * 109.47223 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.46938 * 180.02562 * 20 19 18 38 38 H 1.08993 * 109.47264 * 60.00211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0013 11 6 1.9873 -5.3027 0.0018 12 7 1.7132 -6.0343 -1.0514 13 6 1.2733 -7.2108 -0.5704 14 6 0.8284 -8.3975 -1.3859 15 6 -0.6728 -8.2928 -1.6618 16 6 -1.4421 -8.3965 -0.3434 17 6 -2.9434 -8.2925 -0.6194 18 6 -3.3709 -9.4292 -1.5500 19 6 -2.6015 -9.3256 -2.8684 20 6 -1.1002 -9.4296 -2.5924 21 7 1.3013 -7.1359 0.7266 22 8 1.7086 -6.0479 1.0756 23 1 -0.4850 0.8401 -0.0004 24 1 3.1250 -3.7310 0.8908 25 1 3.1237 -3.7318 -0.8891 26 1 1.3714 -8.4129 -2.3310 27 1 1.0334 -9.3149 -0.8341 28 1 -0.8894 -7.3349 -2.1345 29 1 -1.2255 -9.3544 0.1294 30 1 -1.1372 -7.5869 0.3197 31 1 -3.1604 -7.3346 -1.0923 32 1 -3.4915 -8.3659 0.3200 33 1 -4.4405 -9.3554 -1.7463 34 1 -3.1538 -10.3870 -1.0770 35 1 -2.8186 -8.3678 -3.3413 36 1 -2.9057 -10.1356 -3.5312 37 1 -0.5522 -9.3553 -3.5317 38 1 -0.8832 -10.3873 -2.1195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341589575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:44 Heat of formation + Delta-G solvation = 10.717949 kcal Electronic energy + Delta-G solvation = -19449.480944 eV Core-core repulsion = 16419.198276 eV Total energy + Delta-G solvation = -3030.282668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.60190 -39.78918 -37.06940 -35.07448 -34.61394 -33.06473 -31.65477 -29.99991 -28.24644 -27.69741 -24.78671 -23.49748 -23.17370 -21.81927 -20.65831 -19.84912 -19.20849 -18.29289 -16.90223 -16.54138 -16.33157 -16.05590 -15.62245 -15.27646 -15.05050 -14.87845 -14.71384 -14.42294 -13.72438 -13.39088 -13.26270 -13.18717 -13.10076 -12.91011 -12.86941 -12.68130 -12.40924 -12.12149 -12.03131 -11.92662 -11.83946 -11.39129 -11.16262 -11.12567 -10.97327 -10.84113 -10.38639 -8.77323 -8.39440 -6.19389 -0.08891 1.01206 1.39035 1.44498 1.54241 1.63616 1.80834 2.22365 2.60615 2.97011 3.00504 3.25230 3.66415 3.74928 3.79498 3.96010 4.13147 4.20132 4.30733 4.35536 4.47274 4.49459 4.56072 4.59168 4.62270 4.77312 4.79106 4.87124 4.93336 5.01435 5.13612 5.22596 5.25328 5.29224 5.37249 5.41732 5.42619 5.57027 6.17763 7.03427 7.09640 8.70103 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.003549 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.494912 B = 7887.163762 C = 8495.621091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.538 4.538 8 H 0.091 0.909 9 S -0.151 6.151 10 C -0.018 4.018 11 C 0.218 3.782 12 N -0.495 5.495 13 C 0.176 3.824 14 C -0.022 4.022 15 C -0.079 4.079 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.104 4.104 21 N -0.399 5.399 22 O 0.063 5.937 23 H 0.273 0.727 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -18.616 -3.895 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.686 4.686 8 H 0.109 0.891 9 S 0.075 5.925 10 C -0.167 4.167 11 C -0.002 4.002 12 N -0.231 5.231 13 C -0.097 4.097 14 C -0.061 4.061 15 C -0.099 4.099 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.158 4.158 20 C -0.141 4.141 21 N -0.112 5.112 22 O 0.009 5.991 23 H 0.082 0.918 24 H 0.141 0.859 25 H 0.140 0.860 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.122 -19.458 -3.776 19.934 hybrid contribution 1.521 1.823 0.305 2.394 sum -0.601 -17.634 -3.471 17.983 Atomic orbital electron populations 1.70146 1.07904 1.28845 1.47695 1.26086 0.95961 1.03201 0.93455 0.84937 0.78284 0.75913 0.78801 1.19382 1.20396 1.18046 1.23102 0.95473 0.90597 1.59379 0.89108 1.85266 1.09732 1.00308 1.97190 1.21757 1.01888 0.84591 1.08494 1.28044 0.94680 0.96807 0.80703 1.71932 1.19009 1.03280 1.28901 1.26468 0.98317 0.96453 0.88430 1.20309 0.96817 0.90127 0.98804 1.21114 0.91904 1.00141 0.96734 1.21576 0.95621 1.01416 0.96438 1.21537 0.95278 0.99128 0.99980 1.21518 0.99891 0.98210 0.95536 1.21550 0.94821 1.02102 0.97319 1.21525 0.96282 0.97396 0.98932 1.74573 1.19576 1.00635 1.16380 1.85271 1.59510 1.18461 1.35876 0.91834 0.85883 0.85970 0.87143 0.87211 0.93031 0.90584 0.95364 0.93714 0.91946 0.91460 0.90888 0.93052 0.90041 0.90563 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.32 13.22 21.65 0.29 -53.04 16 2 C 0.02 0.99 5.49 84.86 0.47 1.46 16 3 Si 1.00 41.84 29.55 68.60 2.03 43.86 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.54 -29.00 9.50 67.95 0.65 -28.35 16 8 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 9 S -0.15 -7.76 21.42 -56.49 -1.21 -8.97 16 10 C -0.02 -0.70 6.30 71.23 0.45 -0.25 16 11 C 0.22 8.23 7.77 88.38 0.69 8.92 16 12 N -0.50 -18.34 11.55 -303.21 -3.50 -21.85 16 13 C 0.18 5.68 6.68 138.46 0.93 6.61 16 14 C -0.02 -0.49 5.32 29.85 0.16 -0.34 16 15 C -0.08 -1.75 2.18 -10.79 -0.02 -1.78 16 16 C -0.11 -2.70 5.01 30.59 0.15 -2.54 16 17 C -0.12 -2.64 5.92 30.59 0.18 -2.46 16 18 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 19 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 20 C -0.10 -1.60 5.20 30.59 0.16 -1.44 16 21 N -0.40 -13.92 11.47 -60.31 -0.69 -14.62 16 22 O 0.06 2.33 11.31 74.83 0.85 3.17 16 23 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 24 H 0.12 4.19 8.14 -2.40 -0.02 4.17 16 25 H 0.12 4.41 8.14 -2.40 -0.02 4.39 16 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.03 0.86 6.84 -2.38 -0.02 0.84 16 31 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -64.89 328.00 2.96 -61.94 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.04 Total: 13.01 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 4.16 Total: -23.51 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -3.91 Total: -89.50 kcal Atomic # 8 Polarization: 2.33 SS G_CDS: 0.85 Total: 3.17 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.21 Total: -8.97 kcal Total: -64.89 2.96 -61.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341589575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.654 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds