Wall clock time and date at job start Tue Mar 31 2020 05:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48504 * 109.47363 * 270.00384 * 3 2 1 5 5 H 1.48508 * 109.46844 * 29.99976 * 3 2 1 6 6 H 1.48493 * 109.47407 * 149.99842 * 3 2 1 7 7 C 1.39026 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00271 * 179.97438 * 7 2 1 9 9 N 1.36909 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99611 * 180.27447 * 9 7 2 11 11 O 1.21633 * 120.00427 * 359.72549 * 10 9 7 12 12 C 1.47329 * 119.99731 * 179.72273 * 10 9 7 13 13 C 1.39795 * 120.21471 * 5.53438 * 12 10 9 14 14 C 1.37731 * 119.92194 * 179.97438 * 13 12 10 15 15 C 1.38632 * 120.36365 * 0.02562 * 14 13 12 16 16 C 1.37969 * 120.43355 * 359.95348 * 15 14 13 17 17 C 1.38954 * 120.06598 * 359.78728 * 16 15 14 18 18 N 1.38939 * 120.17801 * 180.25418 * 17 16 15 19 19 C 1.39720 * 119.99964 * 261.84875 * 18 17 16 20 20 C 1.38928 * 120.07369 * 0.15264 * 19 18 17 21 21 C 1.38103 * 119.92129 * 179.72171 * 20 19 18 22 22 C 1.38294 * 120.07226 * 0.55612 * 21 20 19 23 23 C 1.38286 * 120.15523 * 359.71699 * 22 21 20 24 24 C 1.38095 * 120.07448 * 0.02562 * 23 22 21 25 25 H 0.97000 * 119.99554 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99725 * 0.02562 * 9 7 2 27 27 H 1.07996 * 120.03474 * 359.95352 * 13 12 10 28 28 H 1.08002 * 119.82072 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.78523 * 179.97438 * 15 14 13 30 30 H 1.07998 * 119.96753 * 180.02562 * 16 15 14 31 31 H 0.96996 * 119.99735 * 81.85105 * 18 17 16 32 32 H 1.07996 * 120.04014 * 359.97438 * 20 19 18 33 33 H 1.07994 * 119.96341 * 180.29393 * 21 20 19 34 34 H 1.08005 * 119.91996 * 179.70471 * 22 21 20 35 35 H 1.07997 * 119.96449 * 180.02562 * 23 22 21 36 36 H 1.08007 * 120.04013 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2480 1.6176 0.0000 4 1 2.4954 2.0464 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5454 1.4401 0.7000 7 6 2.0090 -1.2040 -0.0005 8 1 3.0890 -1.2040 -0.0010 9 7 1.3244 -2.3896 -0.0016 10 6 1.9983 -3.5568 0.0035 11 8 3.2147 -3.5568 0.0039 12 6 1.2617 -4.8326 0.0085 13 6 -0.1314 -4.8412 -0.1084 14 6 -0.8139 -6.0375 -0.1036 15 6 -0.1271 -7.2356 0.0173 16 6 1.2477 -7.2445 0.1332 17 6 1.9547 -6.0484 0.1250 18 7 3.3397 -6.0549 0.2362 19 6 3.9421 -5.8222 1.4752 20 6 3.1577 -5.5873 2.5976 21 6 3.7563 -5.3634 3.8218 22 6 5.1351 -5.3614 3.9289 23 6 5.9190 -5.5893 2.8127 24 6 5.3268 -5.8192 1.5865 25 1 -0.4849 0.8401 -0.0004 26 1 0.3544 -2.3896 -0.0024 27 1 -0.6716 -3.9108 -0.2022 28 1 -1.8902 -6.0421 -0.1936 29 1 -0.6718 -8.1682 0.0205 30 1 1.7751 -8.1823 0.2266 31 1 3.8882 -6.2210 -0.5463 32 1 2.0810 -5.5838 2.5136 33 1 3.1472 -5.1854 4.6956 34 1 5.6008 -5.1813 4.8867 35 1 6.9954 -5.5875 2.9000 36 1 5.9396 -5.9967 0.7150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343025921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:33 Heat of formation + Delta-G solvation = 28.563322 kcal Electronic energy + Delta-G solvation = -21370.080687 eV Core-core repulsion = 18205.127901 eV Total energy + Delta-G solvation = -3164.952786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92962 -38.39579 -37.30494 -35.06805 -33.87405 -31.60511 -30.54864 -30.43001 -29.98825 -27.63394 -25.23613 -22.98536 -22.62247 -21.95370 -20.78282 -19.46477 -18.16938 -17.18037 -16.96470 -16.32316 -15.52178 -15.13596 -14.71347 -14.38374 -14.04215 -13.81575 -13.73737 -13.40010 -13.33497 -12.89757 -12.68658 -12.46289 -11.97570 -11.65425 -11.54401 -11.25320 -11.14584 -11.00119 -10.53206 -10.44688 -10.29635 -9.93434 -9.60426 -8.66300 -8.44021 -8.43235 -8.33779 -8.04748 -6.96447 -6.55501 -3.87191 1.28634 1.55262 1.92737 2.13703 3.13702 3.21116 3.27664 3.64547 3.86354 4.09212 4.41525 4.45985 4.86100 5.15642 5.19270 5.29882 5.33231 5.40927 5.44091 5.63344 5.74873 5.77900 5.91752 6.02027 6.07939 6.25162 6.28992 6.44551 6.54439 6.71575 6.79309 6.84239 6.92264 7.05806 7.07308 7.37264 7.43555 7.95426 7.98245 8.17052 8.52584 9.08155 9.43990 10.01247 10.61589 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.006541 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.396769 B = 4279.743293 C = 5825.848919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.022 3.978 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.289 4.289 8 H 0.107 0.893 9 N -0.546 5.546 10 C 0.466 3.534 11 O -0.577 6.577 12 C -0.099 4.099 13 C -0.101 4.101 14 C -0.122 4.122 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.177 3.823 18 N -0.679 5.679 19 C 0.253 3.747 20 C -0.184 4.184 21 C -0.076 4.076 22 C -0.188 4.188 23 C -0.079 4.079 24 C -0.189 4.189 25 H 0.275 0.725 26 H 0.392 0.608 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.405 0.595 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 -12.770 2.387 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.181 4.181 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.418 4.418 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.254 3.746 11 O -0.462 6.462 12 C -0.104 4.104 13 C -0.121 4.121 14 C -0.140 4.140 15 C -0.136 4.136 16 C -0.147 4.147 17 C 0.082 3.918 18 N -0.304 5.304 19 C 0.152 3.848 20 C -0.206 4.206 21 C -0.095 4.095 22 C -0.208 4.208 23 C -0.097 4.097 24 C -0.212 4.212 25 H 0.085 0.915 26 H 0.226 0.774 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.242 0.758 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.373 -12.538 2.397 12.839 hybrid contribution -0.213 1.025 -0.405 1.122 sum 1.160 -11.513 1.992 11.742 Atomic orbital electron populations 1.69595 1.06099 1.28628 1.48847 1.25356 0.95679 1.00020 0.97019 0.85806 0.79361 0.80372 0.78542 1.20225 1.20714 1.19194 1.19809 0.93655 0.82148 1.46236 0.87553 1.41922 1.09346 1.04757 1.62089 1.17542 0.87685 0.82976 0.86432 1.90638 1.12682 1.86733 1.56123 1.20936 0.93639 0.95229 1.00633 1.21414 0.93226 0.98687 0.98773 1.21059 0.99857 0.92251 1.00845 1.21004 0.93750 0.97941 1.00933 1.21348 0.94298 0.97301 1.01802 1.17302 0.83854 0.91145 0.99459 1.41310 1.02636 1.78363 1.08110 1.17575 0.91447 0.90996 0.84825 1.20576 0.99197 1.08535 0.92292 1.20787 0.94710 0.97442 0.96568 1.20748 0.93764 1.07980 0.98329 1.20728 0.98875 0.97804 0.92321 1.20434 0.92436 1.10175 0.98114 0.91518 0.77371 0.85313 0.85915 0.86080 0.85902 0.75834 0.86923 0.86859 0.87140 0.86827 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.85 13.05 55.50 0.72 -23.13 16 2 C 0.02 0.59 5.50 -17.45 -0.10 0.49 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.29 -8.04 9.68 -14.99 -0.15 -8.19 16 8 H 0.11 3.11 7.15 -52.49 -0.38 2.74 16 9 N -0.55 -14.06 5.23 -11.98 -0.06 -14.12 16 10 C 0.47 11.40 7.67 -12.56 -0.10 11.30 16 11 O -0.58 -15.52 13.60 5.25 0.07 -15.45 16 12 C -0.10 -1.96 5.57 -104.79 -0.58 -2.54 16 13 C -0.10 -1.71 9.52 -39.18 -0.37 -2.09 16 14 C -0.12 -1.66 10.02 -39.62 -0.40 -2.06 16 15 C -0.12 -1.47 10.03 -39.53 -0.40 -1.87 16 16 C -0.13 -1.80 9.96 -39.41 -0.39 -2.19 16 17 C 0.18 3.09 4.45 -83.55 -0.37 2.72 16 18 N -0.68 -11.89 3.90 -8.22 -0.03 -11.92 16 19 C 0.25 4.66 5.28 -83.75 -0.44 4.21 16 20 C -0.18 -3.42 9.27 -39.38 -0.36 -3.79 16 21 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 22 C -0.19 -2.94 10.04 -39.54 -0.40 -3.34 16 23 C -0.08 -1.22 10.04 -39.62 -0.40 -1.62 16 24 C -0.19 -3.20 9.90 -39.38 -0.39 -3.59 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.39 9.61 5.95 -40.82 -0.24 9.37 16 27 H 0.13 2.19 6.44 -52.49 -0.34 1.85 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.40 6.48 8.83 -40.82 -0.36 6.12 16 32 H 0.11 2.15 6.78 -52.49 -0.36 1.80 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -31.01 313.48 -8.61 -39.62 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -3.77 Total: 18.63 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -5.24 Total: -14.21 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.63 Total: -49.17 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.07 Total: -15.45 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.01 -8.61 -39.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343025921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.185 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds