Wall clock time and date at job start Tue Mar 31 2020 05:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00370 * 2 1 4 4 C 1.38759 * 120.05239 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94381 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05704 * 359.97438 * 5 4 3 7 7 C 1.38240 * 120.10794 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.06065 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.03158 * 180.02562 * 8 7 6 10 10 S 1.81392 * 109.47327 * 269.95664 * 9 8 7 11 11 O 1.42108 * 109.47021 * 63.61404 * 10 9 8 12 12 C 1.81402 * 103.00231 * 179.97438 * 10 9 8 13 13 C 1.52990 * 109.47406 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47250 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47001 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00244 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99705 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00377 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47293 * 59.99851 * 19 17 15 21 21 H 1.48504 * 109.47022 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46891 * 299.99172 * 19 17 15 23 23 H 1.08997 * 109.47450 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47181 * 300.00095 * 1 2 3 25 25 H 1.08998 * 109.47333 * 59.99666 * 1 2 3 26 26 H 1.08001 * 120.03003 * 0.02562 * 4 3 2 27 27 H 1.07997 * 119.97310 * 179.97438 * 5 4 3 28 28 H 1.07995 * 119.94657 * 179.74935 * 6 5 4 29 29 H 1.08005 * 119.96924 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.47077 * 29.95693 * 9 8 7 31 31 H 1.09004 * 109.47130 * 149.95450 * 9 8 7 32 32 H 1.08995 * 109.47408 * 300.00457 * 12 10 9 33 33 H 1.09010 * 109.46680 * 60.00041 * 12 10 9 34 34 H 1.08996 * 109.47543 * 300.00159 * 13 12 10 35 35 H 1.09003 * 109.47335 * 60.00669 * 13 12 10 36 36 H 1.09005 * 109.46848 * 300.00078 * 14 13 12 37 37 H 1.08993 * 109.47083 * 60.00216 * 14 13 12 38 38 H 0.96996 * 120.00294 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6758 -0.0005 7 6 4.0560 2.5171 -0.0011 8 6 3.4311 1.2847 -0.0016 9 6 4.2537 0.0221 -0.0016 10 16 4.5833 -0.4849 -1.7118 11 8 5.3686 0.5082 -2.3572 12 6 5.5678 -1.9947 -1.5073 13 6 5.9324 -2.5561 -2.8830 14 6 6.7623 -3.8299 -2.7106 15 6 7.1218 -4.3825 -4.0657 16 1 6.7912 -3.8761 -4.9605 17 6 7.8721 -5.5351 -4.1632 18 7 8.2744 -6.1521 -3.0736 19 14 8.3172 -6.2205 -5.8430 20 1 9.1077 -5.2133 -6.5950 21 1 9.1228 -7.4568 -5.6755 22 1 7.0754 -6.5363 -6.5936 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.2128 2.3204 0.0014 27 1 1.3340 4.5113 0.0000 28 1 3.7923 4.6380 -0.0050 29 1 5.1344 2.5752 -0.0019 30 1 5.1978 0.2035 0.5120 31 1 3.7064 -0.7681 0.5125 32 1 6.4790 -1.7625 -0.9562 33 1 4.9880 -2.7346 -0.9554 34 1 5.0210 -2.7885 -3.4338 35 1 6.5121 -1.8165 -3.4354 36 1 7.6738 -3.5978 -2.1596 37 1 6.1823 -4.5694 -2.1585 38 1 8.8025 -6.9628 -3.1422 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348021992.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:47 Heat of formation + Delta-G solvation = -66.760203 kcal Electronic energy + Delta-G solvation = -19075.992788 eV Core-core repulsion = 16010.057664 eV Total energy + Delta-G solvation = -3065.935124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38544 -37.59488 -35.34044 -34.37699 -33.04245 -31.98168 -30.31646 -27.93841 -27.49535 -26.81697 -23.42324 -22.32922 -21.77081 -20.20168 -18.21787 -17.23702 -16.49580 -16.29440 -16.00029 -15.89832 -15.03865 -14.75630 -14.67221 -14.38158 -14.13150 -14.01559 -13.23418 -13.15544 -12.74783 -12.33734 -12.24189 -12.04223 -11.93647 -11.51209 -11.33426 -11.31018 -11.09307 -10.81814 -10.73036 -10.67437 -10.19443 -9.74278 -9.43325 -9.12705 -8.85854 -8.32818 -8.31679 -7.78217 -5.97932 -4.00505 0.99124 1.23486 1.91527 2.94745 3.06048 3.35824 3.39577 3.42805 3.61042 4.05871 4.48284 4.51030 4.60014 4.77615 4.87683 4.92356 5.09506 5.11958 5.27407 5.35907 5.37594 5.42182 5.54888 5.63841 5.68810 5.93121 6.08866 6.22262 6.26590 6.35998 6.56848 6.58112 6.75964 7.09152 7.17184 7.68874 7.82205 8.01773 8.43825 9.06339 9.63472 11.13352 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.032771 B = 0.003082 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.199523 B = 9081.977598 C = 9462.009386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.131 3.869 4 C -0.207 4.207 5 C -0.086 4.086 6 C -0.153 4.153 7 C -0.074 4.074 8 C -0.089 4.089 9 C -0.403 4.403 10 S 1.230 4.770 11 O -0.846 6.846 12 C -0.434 4.434 13 C -0.093 4.093 14 C 0.027 3.973 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.103 0.897 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.014 0.986 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.824 15.908 9.412 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.084 3.916 4 C -0.225 4.225 5 C -0.104 4.104 6 C -0.171 4.171 7 C -0.094 4.094 8 C -0.091 4.091 9 C -0.537 4.537 10 S 1.431 4.569 11 O -0.842 6.842 12 C -0.572 4.572 13 C -0.132 4.132 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.122 0.878 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.110 0.890 31 H 0.146 0.854 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.038 0.962 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.912 16.009 8.647 26.243 hybrid contribution 2.050 0.052 0.424 2.094 sum -16.861 16.060 9.071 24.991 Atomic orbital electron populations 1.23102 0.78333 1.04285 1.01265 1.86086 1.21304 1.26349 1.88476 1.18754 0.91356 0.84562 0.96894 1.21202 0.99995 0.92238 1.09103 1.20929 0.94579 0.97028 0.97903 1.21035 0.93957 0.98297 1.03837 1.20975 1.00209 0.91189 0.96983 1.18489 0.90115 0.94142 1.06373 1.26580 1.04030 1.01487 1.21625 1.70784 1.12323 0.88109 0.85679 1.93082 1.73172 1.55156 1.62769 1.27679 1.10063 1.13588 1.05919 1.21305 1.00713 1.00020 0.91135 1.19093 0.94444 0.90526 0.97064 1.21254 1.33093 1.08985 0.92759 0.92577 1.25028 0.95946 0.96891 0.96601 1.69956 1.37279 1.18869 1.27532 0.86641 0.78550 0.78290 0.84441 1.20245 1.21306 1.20112 0.87834 0.92869 0.92463 0.85236 0.85810 0.85845 0.85523 0.88968 0.85366 0.90193 0.86868 0.92142 0.92871 0.96772 0.96238 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.96 9.54 -19.43 -0.19 -3.14 16 3 C 0.13 1.43 6.66 -39.22 -0.26 1.17 16 4 C -0.21 -1.91 9.04 -39.43 -0.36 -2.26 16 5 C -0.09 -0.78 10.04 -39.60 -0.40 -1.18 16 6 C -0.15 -1.60 10.04 -39.56 -0.40 -1.99 16 7 C -0.07 -0.93 9.70 -39.61 -0.38 -1.31 16 8 C -0.09 -1.12 5.15 -104.47 -0.54 -1.66 16 9 C -0.40 -4.96 5.83 36.00 0.21 -4.75 16 10 S 1.23 17.82 13.14 -107.50 -1.41 16.41 16 11 O -0.85 -17.15 18.14 -35.23 -0.64 -17.79 16 12 C -0.43 -7.32 5.92 37.15 0.22 -7.10 16 13 C -0.09 -1.98 5.16 -26.73 -0.14 -2.12 16 14 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 15 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 25 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 26 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 27 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.09 1.15 8.09 -51.92 -0.42 0.73 16 31 H 0.13 1.32 7.53 -51.92 -0.39 0.93 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.11 1.63 8.14 -51.92 -0.42 1.20 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -36.75 336.32 -8.76 -45.51 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.71 Total: -2.98 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: -1.60 Total: -33.41 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.74 Total: -26.65 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.82 Total: -20.94 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 17.82 SS G_CDS: -1.41 Total: 16.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.75 -8.76 -45.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348021992.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.253 kcal (2) G-P(sol) polarization free energy of solvation -36.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds