Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 117.00469 * 2 1 4 4 C 1.38756 * 120.05282 * 0.24818 * 3 2 1 5 5 C 1.38124 * 119.93947 * 180.27918 * 4 3 2 6 6 C 1.38289 * 120.05846 * 359.72467 * 5 4 3 7 7 C 1.38248 * 120.10825 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.05911 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.02944 * 180.02562 * 8 7 6 10 10 S 1.81399 * 109.47054 * 90.00098 * 9 8 7 11 11 O 1.42102 * 109.47216 * 296.39016 * 10 9 8 12 12 C 1.81398 * 103.00088 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47199 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47006 * 179.97438 * 13 12 10 15 15 C 1.50695 * 109.46980 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00349 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00086 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99918 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00323 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46931 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47094 * 120.00020 * 19 17 15 22 22 H 1.48502 * 109.47055 * 240.00295 * 19 17 15 23 23 H 1.08990 * 109.47479 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46950 * 300.00691 * 1 2 3 25 25 H 1.09008 * 109.46498 * 59.99747 * 1 2 3 26 26 H 1.07996 * 120.02990 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.97168 * 179.74766 * 5 4 3 28 28 H 1.07998 * 119.94661 * 180.02562 * 6 5 4 29 29 H 1.08000 * 119.96814 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47247 * 330.00127 * 9 8 7 31 31 H 1.09001 * 109.47358 * 209.99553 * 9 8 7 32 32 H 1.09002 * 109.46881 * 299.99990 * 12 10 9 33 33 H 1.09000 * 109.46946 * 60.00038 * 12 10 9 34 34 H 1.08998 * 109.46864 * 299.99844 * 13 12 10 35 35 H 1.09000 * 109.46988 * 60.00250 * 13 12 10 36 36 H 1.09002 * 109.47076 * 300.00177 * 14 13 12 37 37 H 1.09000 * 109.46945 * 60.00344 * 14 13 12 38 38 H 0.97002 * 120.00083 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 0.0052 5 6 1.9211 3.6047 -0.0006 6 6 3.3022 3.6757 -0.0059 7 6 4.0561 2.5169 -0.0059 8 6 3.4312 1.2846 -0.0001 9 6 4.2538 0.0219 0.0006 10 16 4.5900 -0.4798 1.7110 11 8 5.3777 0.5152 2.3504 12 6 5.5724 -1.9911 1.5074 13 6 5.9432 -2.5477 2.8835 14 6 6.7712 -3.8227 2.7117 15 6 7.1359 -4.3713 4.0671 16 1 6.8094 -3.8618 4.9615 17 6 7.8856 -5.5243 4.1652 18 7 8.2828 -6.1451 3.0759 19 14 8.3371 -6.2047 5.8453 20 1 7.7726 -5.3278 6.9025 21 1 7.7818 -7.5743 5.9903 22 1 9.8153 -6.2531 5.9788 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3632 0.5139 -0.8901 26 1 0.2130 2.3204 0.0097 27 1 1.3343 4.5113 -0.0007 28 1 3.7926 4.6379 -0.0101 29 1 5.1346 2.5749 -0.0096 30 1 5.1959 0.2017 -0.5172 31 1 3.7045 -0.7698 -0.5089 32 1 4.9897 -2.7322 0.9602 33 1 6.4816 -1.7613 0.9518 34 1 6.5261 -1.8064 3.4302 35 1 5.0342 -2.7774 3.4395 36 1 6.1880 -4.5638 2.1651 37 1 7.6802 -3.5935 2.1556 38 1 8.8105 -6.9561 3.1450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348021993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = -66.814189 kcal Electronic energy + Delta-G solvation = -19075.167027 eV Core-core repulsion = 16009.229562 eV Total energy + Delta-G solvation = -3065.937465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38507 -37.59439 -35.34195 -34.37870 -33.04240 -31.98207 -30.31614 -27.93844 -27.49706 -26.81756 -23.42641 -22.32950 -21.77096 -20.20362 -18.21782 -17.23708 -16.49652 -16.29863 -16.00328 -15.89607 -15.04093 -14.75714 -14.67242 -14.37367 -14.13182 -14.01549 -13.23509 -13.15703 -12.74702 -12.35321 -12.24233 -12.04338 -11.93250 -11.51249 -11.33464 -11.31350 -11.09449 -10.85540 -10.73638 -10.62769 -10.18714 -9.75039 -9.43743 -9.10547 -8.85700 -8.33645 -8.31708 -7.78161 -5.98410 -4.00756 0.99109 1.23470 1.91427 2.94720 3.06012 3.32951 3.40222 3.45295 3.61040 4.05861 4.48159 4.51024 4.60036 4.77603 4.87682 4.92249 5.09509 5.11948 5.27352 5.35889 5.37346 5.42197 5.54736 5.63840 5.68769 5.93124 6.08872 6.22261 6.26496 6.35992 6.56741 6.58101 6.75891 7.09060 7.17158 7.69165 7.81974 8.01551 8.43686 9.06561 9.63349 11.12926 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.032755 B = 0.003082 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.638867 B = 9083.362099 C = 9464.145455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.131 3.869 4 C -0.207 4.207 5 C -0.086 4.086 6 C -0.153 4.153 7 C -0.074 4.074 8 C -0.089 4.089 9 C -0.403 4.403 10 S 1.230 4.770 11 O -0.846 6.846 12 C -0.434 4.434 13 C -0.093 4.093 14 C 0.026 3.974 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.103 0.897 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.867 15.917 -9.395 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.084 3.916 4 C -0.225 4.225 5 C -0.104 4.104 6 C -0.171 4.171 7 C -0.094 4.094 8 C -0.091 4.091 9 C -0.537 4.537 10 S 1.431 4.569 11 O -0.842 6.842 12 C -0.573 4.573 13 C -0.132 4.132 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.122 0.878 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.110 0.890 31 H 0.146 0.854 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.032 0.968 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.956 16.028 -8.625 26.280 hybrid contribution 2.061 0.030 -0.451 2.110 sum -16.895 16.058 -9.076 25.014 Atomic orbital electron populations 1.23105 0.78332 1.04281 1.01265 1.86088 1.21303 1.26352 1.88478 1.18754 0.91354 0.84562 0.96895 1.21202 0.99996 0.92237 1.09102 1.20929 0.94579 0.97029 0.97904 1.21035 0.93957 0.98294 1.03836 1.20975 1.00206 0.91191 0.96987 1.18488 0.90116 0.94142 1.06371 1.26581 1.04053 1.01464 1.21623 1.70780 1.12267 0.88071 0.85779 1.93081 1.73088 1.54997 1.63009 1.27682 1.10047 1.13616 1.05913 1.21306 1.00686 1.00049 0.91124 1.19103 0.94470 0.90531 0.97102 1.21326 1.32930 1.08851 0.92800 0.92472 1.25037 0.95984 0.96909 0.96607 1.69981 1.37485 1.18716 1.27434 0.86528 0.78154 0.78854 0.84447 1.19638 1.20967 1.21060 0.87837 0.92462 0.92869 0.85236 0.85811 0.85845 0.85525 0.88972 0.85365 0.86860 0.90199 0.92869 0.92140 0.96230 0.96759 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.96 9.54 -19.43 -0.19 -3.14 16 3 C 0.13 1.43 6.66 -39.22 -0.26 1.17 16 4 C -0.21 -1.91 9.04 -39.43 -0.36 -2.26 16 5 C -0.09 -0.78 10.04 -39.60 -0.40 -1.18 16 6 C -0.15 -1.60 10.04 -39.56 -0.40 -1.99 16 7 C -0.07 -0.93 9.70 -39.60 -0.38 -1.31 16 8 C -0.09 -1.12 5.15 -104.48 -0.54 -1.66 16 9 C -0.40 -4.95 5.84 36.01 0.21 -4.74 16 10 S 1.23 17.81 13.14 -107.50 -1.41 16.40 16 11 O -0.85 -17.15 18.14 -35.23 -0.64 -17.79 16 12 C -0.43 -7.31 5.92 37.16 0.22 -7.09 16 13 C -0.09 -1.97 5.16 -26.73 -0.14 -2.11 16 14 C 0.03 0.70 4.97 -27.89 -0.14 0.56 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 19 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 25 H 0.05 0.25 7.67 -51.92 -0.40 -0.15 16 26 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 27 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.09 1.15 8.09 -51.92 -0.42 0.73 16 31 H 0.13 1.32 7.52 -51.92 -0.39 0.93 16 32 H 0.11 1.63 8.14 -51.92 -0.42 1.20 16 33 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -36.77 336.32 -8.76 -45.53 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.71 Total: -3.05 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: -1.60 Total: -33.38 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.82 Total: -20.93 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 17.81 SS G_CDS: -1.41 Total: 16.40 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.77 -8.76 -45.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348021993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.279 kcal (2) G-P(sol) polarization free energy of solvation -36.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds