Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48504 * 109.47272 * 240.00114 * 3 2 1 5 5 H 1.48496 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47200 * 119.99863 * 3 2 1 7 7 C 1.37875 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00441 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99598 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47067 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47421 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47431 * 180.02562 * 12 11 10 14 14 N 1.31130 * 126.54646 * 90.00204 * 13 12 11 15 15 C 1.34492 * 105.61399 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.29104 * 180.02562 * 15 14 13 17 17 H 1.09004 * 110.75514 * 347.06860 * 16 15 14 18 18 C 1.55134 * 110.85950 * 110.78869 * 16 15 14 19 19 C 1.53850 * 106.90387 * 160.29502 * 18 16 15 20 20 C 1.54277 * 108.92459 * 312.74932 * 19 18 16 21 21 S 1.83087 * 104.65151 * 27.94916 * 20 19 18 22 22 N 1.29954 * 107.42242 * 359.97438 * 15 14 13 23 23 O 1.21293 * 110.25286 * 0.02562 * 22 15 14 24 24 H 0.97004 * 120.00015 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46912 * 60.00418 * 9 7 2 26 26 H 1.08997 * 109.47442 * 300.00593 * 9 7 2 27 27 H 1.09000 * 109.46884 * 60.00433 * 10 9 7 28 28 H 1.08997 * 109.47496 * 300.00592 * 10 9 7 29 29 H 1.09000 * 109.46883 * 60.00471 * 11 10 9 30 30 H 1.08997 * 109.47478 * 300.00642 * 11 10 9 31 31 H 1.09000 * 109.46731 * 60.00349 * 12 11 10 32 32 H 1.08997 * 109.47295 * 300.00724 * 12 11 10 33 33 H 1.09007 * 109.97497 * 279.66196 * 18 16 15 34 34 H 1.09002 * 109.97538 * 40.92913 * 18 16 15 35 35 H 1.08997 * 109.61606 * 192.82703 * 19 18 16 36 36 H 1.09001 * 109.46473 * 72.57986 * 19 18 16 37 37 H 1.09002 * 110.39861 * 269.15669 * 20 19 18 38 38 H 1.09001 * 110.40226 * 146.74578 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 6 2.4747 -6.1500 -0.0018 13 6 1.7212 -7.4551 -0.0018 14 7 1.3304 -8.1311 -1.0553 15 6 0.7030 -9.2194 -0.5748 16 6 0.0699 -10.3169 -1.3906 17 1 -0.0215 -10.0183 -2.4350 18 6 0.8729 -11.6376 -1.2574 19 6 -0.0700 -12.7786 -1.6770 20 6 -1.4284 -12.5908 -0.9702 21 16 -1.5638 -10.7851 -0.6997 22 7 0.7440 -9.1512 0.7223 23 8 1.3245 -8.1451 1.0717 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8727 -3.6047 0.8877 28 1 2.8714 -3.6039 -0.8922 29 1 0.8529 -5.0446 -0.8905 30 1 0.8547 -5.0449 0.8894 31 1 3.1019 -6.0922 0.8877 32 1 3.1008 -6.0923 -0.8922 33 1 1.7425 -11.6125 -1.9142 34 1 1.1903 -11.7778 -0.2241 35 1 0.3633 -13.7362 -1.3883 36 1 -0.2131 -12.7529 -2.7573 37 1 -1.4370 -13.1195 -0.0170 38 1 -2.2401 -12.9415 -1.6075 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350201450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = 37.235322 kcal Electronic energy + Delta-G solvation = -18834.579681 eV Core-core repulsion = 15805.446892 eV Total energy + Delta-G solvation = -3029.132788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.64398 -37.18013 -36.13461 -35.26410 -33.42576 -32.10629 -30.16210 -29.26231 -25.97024 -25.79450 -23.70615 -22.73651 -21.75139 -20.82673 -20.17220 -18.05088 -17.72073 -17.02123 -16.20880 -16.00124 -15.17263 -14.88373 -14.62480 -14.46525 -14.35343 -13.50527 -13.01863 -12.96296 -12.68433 -12.54143 -12.18251 -12.14454 -12.06360 -11.71382 -11.48433 -11.32985 -11.11477 -11.00853 -10.64501 -10.59580 -10.55688 -10.34523 -9.93454 -9.70623 -9.30544 -9.05201 -8.33525 -8.04179 -5.98456 -4.01249 0.94040 1.29945 1.88602 2.25887 2.80746 3.30037 3.34258 3.38910 3.40946 3.90133 4.07026 4.23893 4.37123 4.46802 4.59174 4.62237 4.94641 5.12500 5.12870 5.21738 5.22491 5.26871 5.32279 5.37252 5.45011 5.55171 5.75924 5.84944 6.00964 6.06825 6.35071 6.68006 6.83226 7.10613 7.68486 7.82552 8.01405 8.10544 8.43041 9.05976 9.62842 11.12830 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042932 B = 0.002476 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.037031 B =11304.347394 C =11608.969101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.108 4.108 11 C -0.116 4.116 12 C -0.031 4.031 13 C 0.200 3.800 14 N -0.481 5.481 15 C 0.174 3.826 16 C 0.046 3.954 17 H 0.128 0.872 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.080 4.080 21 S -0.248 6.248 22 N -0.364 5.364 23 O 0.081 5.919 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -26.558 -2.704 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.070 4.070 13 C -0.020 4.020 14 N -0.214 5.214 15 C -0.100 4.100 16 C -0.084 4.084 17 H 0.146 0.854 18 C -0.161 4.161 19 C -0.165 4.165 20 C -0.229 4.229 21 S -0.022 6.022 22 N -0.070 5.070 23 O 0.020 5.980 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.683 -26.508 -2.154 26.604 hybrid contribution 1.265 0.453 -0.460 1.420 sum 1.948 -26.055 -2.614 26.258 Atomic orbital electron populations 1.69958 1.06076 1.26716 1.50743 1.25036 0.94845 0.99281 0.95364 0.86659 0.79573 0.83169 0.78596 1.20248 1.21333 1.20236 1.21221 0.92997 0.91092 1.50699 0.92681 1.19100 0.94028 0.91272 0.97337 1.21629 0.99167 0.93037 1.00733 1.21746 0.97523 0.93334 1.02882 1.20562 0.97172 0.83386 1.05859 1.29174 0.95343 0.97438 0.80046 1.71889 1.15782 1.04732 1.29021 1.24802 1.00570 0.96225 0.88434 1.22051 0.93362 0.92781 1.00212 0.85377 1.22706 0.98981 0.90255 1.04158 1.22284 0.93128 0.99529 1.01533 1.24085 1.00534 0.93814 1.04419 1.88037 1.23077 1.07888 1.83220 1.74674 1.13997 1.03312 1.15054 1.85332 1.51834 1.24824 1.35962 0.92940 0.96572 0.96551 0.92891 0.92907 0.91465 0.91604 0.87949 0.87219 0.88899 0.89746 0.89262 0.90076 0.88624 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.04 5.15 -26.74 -0.14 -2.18 16 11 C -0.12 -1.82 5.20 -26.73 -0.14 -1.96 16 12 C -0.03 -0.37 5.84 -27.88 -0.16 -0.53 16 13 C 0.20 2.74 7.77 -13.06 -0.10 2.64 16 14 N -0.48 -7.04 11.55 -9.87 -0.11 -7.15 16 15 C 0.17 2.41 6.98 -156.37 -1.09 1.31 16 16 C 0.05 0.49 3.77 -26.75 -0.10 0.39 16 17 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.12 -0.93 5.88 -25.16 -0.15 -1.08 16 19 C -0.13 -0.69 6.39 -25.62 -0.16 -0.85 16 20 C -0.08 -0.55 7.34 37.83 0.28 -0.27 16 21 S -0.25 -2.84 22.60 -107.50 -2.43 -5.27 16 22 N -0.36 -5.40 12.02 30.90 0.37 -5.03 16 23 O 0.08 1.17 11.31 18.11 0.20 1.37 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -32.33 333.58 -9.42 -41.75 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -5.88 Total: -5.35 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.32 Total: -15.58 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.99 Total: -38.50 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.43 Total: -5.27 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.33 -9.42 -41.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350201450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.987 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds