Wall clock time and date at job start Tue Mar 31 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47249 * 348.93328 * 3 2 1 5 5 N 1.46501 * 109.47044 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00145 * 264.99716 * 5 4 3 7 7 C 1.50696 * 109.47296 * 275.59980 * 6 5 4 8 8 H 1.08007 * 119.99921 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99996 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00070 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00165 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46956 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47217 * 119.99418 * 11 9 7 14 14 H 1.48496 * 109.47139 * 239.99804 * 11 9 7 15 15 C 1.34783 * 119.99700 * 85.00315 * 5 4 3 16 16 O 1.21276 * 120.00191 * 5.00497 * 15 5 4 17 17 C 1.50695 * 119.99743 * 185.01169 * 15 5 4 18 18 H 1.09004 * 109.30823 * 306.19548 * 17 15 5 19 19 C 1.52581 * 109.39006 * 186.44192 * 17 15 5 20 20 C 1.52587 * 110.69319 * 169.15254 * 19 17 15 21 21 C 1.53092 * 109.95427 * 70.69739 * 20 19 17 22 22 S 1.81750 * 108.84194 * 296.97591 * 21 20 19 23 23 C 1.53111 * 109.36438 * 65.97815 * 17 15 5 24 24 H 1.09003 * 109.46941 * 228.93450 * 3 2 1 25 25 H 1.08993 * 109.47143 * 108.93556 * 3 2 1 26 26 H 1.08995 * 109.47246 * 59.99955 * 4 3 2 27 27 H 1.09001 * 109.47129 * 299.99852 * 4 3 2 28 28 H 1.09002 * 109.46715 * 35.59651 * 6 5 4 29 29 H 1.08997 * 109.46829 * 155.59363 * 6 5 4 30 30 H 0.96996 * 120.00195 * 179.97438 * 10 9 7 31 31 H 1.09006 * 109.22263 * 48.85732 * 19 17 15 32 32 H 1.08998 * 109.22769 * 289.45327 * 19 17 15 33 33 H 1.09000 * 109.39059 * 190.84984 * 20 19 17 34 34 H 1.09006 * 109.38804 * 310.55317 * 20 19 17 35 35 H 1.09000 * 109.57860 * 56.78544 * 21 20 19 36 36 H 1.08996 * 109.57593 * 177.16528 * 21 20 19 37 37 H 1.09002 * 109.61233 * 63.40688 * 23 17 15 38 38 H 1.09002 * 109.57822 * 303.00003 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4148 0.2769 5 7 4.5837 -1.4142 0.2763 6 6 5.3158 -1.7652 -0.9431 7 6 5.4475 -3.2636 -1.0362 8 1 5.0281 -3.8915 -0.2640 9 6 6.1042 -3.8327 -2.1066 10 7 6.6153 -3.0680 -3.0466 11 14 6.2681 -5.6899 -2.2217 12 1 5.6129 -6.3184 -1.0465 13 1 5.6160 -6.1682 -3.4671 14 1 7.7062 -6.0596 -2.2425 15 6 5.2578 -1.0908 1.3976 16 8 4.6553 -0.8888 2.4306 17 6 6.7604 -0.9799 1.3679 18 1 7.1818 -1.9006 0.9643 19 6 7.2806 -0.7636 2.7859 20 6 8.7984 -0.9136 2.8321 21 6 9.4623 0.2723 2.1275 22 16 8.9786 0.2600 0.3756 23 6 7.1650 0.1984 0.4778 24 1 2.9710 0.6759 0.7748 25 1 2.9711 0.3343 -0.9720 26 1 2.7556 -2.0900 -0.4979 27 1 2.7555 -1.7484 1.2490 28 1 4.7732 -1.3935 -1.8123 29 1 6.3077 -1.3144 -0.9138 30 1 7.0777 -3.4683 -3.7994 31 1 6.8269 -1.4988 3.4506 32 1 7.0086 0.2379 3.1191 33 1 9.1272 -0.9478 3.8708 34 1 9.0860 -1.8387 2.3324 35 1 9.1339 1.2028 2.5905 36 1 10.5458 0.1849 2.2078 37 1 6.7918 1.1275 0.9086 38 1 6.7475 0.0627 -0.5199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357848403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:00 Heat of formation + Delta-G solvation = -22.423111 kcal Electronic energy + Delta-G solvation = -20430.143327 eV Core-core repulsion = 17398.423554 eV Total energy + Delta-G solvation = -3031.719772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79891 -36.88079 -36.04423 -35.28593 -32.95537 -32.05677 -30.56542 -27.31676 -27.05454 -24.77056 -23.46660 -22.51540 -20.72949 -18.45998 -17.58130 -16.92691 -16.48640 -16.13615 -15.52519 -15.07502 -14.74594 -14.54302 -14.38068 -13.98510 -13.58312 -13.27502 -13.06023 -12.87730 -12.48345 -12.38136 -12.30123 -12.20117 -11.65313 -11.45562 -11.30817 -11.19003 -11.04203 -10.88771 -10.77003 -10.66456 -10.59146 -10.18831 -9.79927 -9.60295 -9.07094 -8.60271 -7.96415 -7.44273 -6.24940 -4.32176 1.95278 2.64713 2.83485 2.91826 3.19081 3.19261 3.28824 3.32743 3.62928 4.28028 4.32404 4.81412 4.89312 4.96622 5.05164 5.10621 5.16240 5.29898 5.32589 5.38317 5.55609 5.62287 5.71197 5.81084 5.85133 5.96071 6.09355 6.13470 6.22936 6.30172 6.46382 6.58313 7.04732 7.33520 7.67780 7.68542 7.95256 8.12611 8.66164 8.81844 9.36248 10.81872 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.008017 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.960749 B = 3491.864647 C = 5551.867671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.126 3.874 5 N -0.593 5.593 6 C 0.223 3.777 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.069 3.931 10 N -0.886 5.886 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.525 3.475 16 O -0.567 6.567 17 C -0.105 4.105 18 H 0.120 0.880 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.087 4.087 22 S -0.252 6.252 23 C -0.077 4.077 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.266 0.734 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 6.491 6.973 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.000 4.000 5 N -0.323 5.323 6 C 0.104 3.896 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.135 4.135 10 N -0.523 5.523 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.207 1.207 15 C 0.312 3.688 16 O -0.447 6.447 17 C -0.127 4.127 18 H 0.138 0.862 19 C -0.145 4.145 20 C -0.161 4.161 21 C -0.236 4.236 22 S -0.024 6.024 23 C -0.225 4.225 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.161 6.634 6.377 9.730 hybrid contribution -0.132 -1.119 0.665 1.309 sum 3.029 5.515 7.041 9.443 Atomic orbital electron populations 1.81179 1.13067 1.08845 1.09607 1.29090 0.95112 0.92927 0.92557 1.19776 0.81407 1.01786 1.05714 1.21105 0.81680 0.93485 1.03713 1.48214 1.05232 1.65501 1.13327 1.19830 0.92788 0.96524 0.80469 1.21458 1.37227 0.91477 1.07971 0.91992 1.24899 0.94910 0.98422 0.95287 1.69900 1.36235 1.35229 1.10965 0.86497 0.78034 0.85178 0.78136 1.19704 1.20877 1.20720 1.20401 0.89452 0.75992 0.82994 1.90610 1.70415 1.52423 1.31255 1.21467 0.93306 1.01094 0.96859 0.86185 1.21318 0.94406 1.03200 0.95583 1.21749 0.95323 0.98262 1.00726 1.23467 1.03671 1.01491 0.94926 1.87054 1.07293 1.97557 1.10518 1.23698 0.93696 0.99814 1.05283 0.87427 0.87043 0.89039 0.90229 0.94508 0.92584 0.92438 0.90354 0.91651 0.90982 0.90274 0.90227 0.88160 0.90108 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.41 18.54 42.15 0.78 -6.63 16 2 C 0.22 3.12 15.43 -20.76 -0.32 2.80 16 3 C -0.05 -0.56 5.99 -29.52 -0.18 -0.74 16 4 C 0.13 1.94 5.37 -4.04 -0.02 1.91 16 5 N -0.59 -10.42 2.47 -175.07 -0.43 -10.86 16 6 C 0.22 4.56 4.53 -5.20 -0.02 4.54 16 7 C -0.54 -12.97 9.38 -34.44 -0.32 -13.29 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -22.94 13.29 55.43 0.74 -22.21 16 11 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.53 9.22 6.92 -10.99 -0.08 9.14 16 16 O -0.57 -10.89 15.49 5.56 0.09 -10.80 16 17 C -0.10 -1.65 1.54 -91.93 -0.14 -1.79 16 18 H 0.12 2.15 7.60 -51.93 -0.39 1.76 16 19 C -0.11 -1.46 4.33 -27.16 -0.12 -1.57 16 20 C -0.12 -1.40 5.75 -26.89 -0.15 -1.55 16 21 C -0.09 -0.98 6.45 37.21 0.24 -0.74 16 22 S -0.25 -3.67 22.33 -107.50 -2.40 -6.07 16 23 C -0.08 -1.13 5.30 37.21 0.20 -0.93 16 24 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 27 H 0.08 1.27 7.51 -51.93 -0.39 0.88 16 28 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 29 H 0.06 1.17 4.01 -51.93 -0.21 0.96 16 30 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 31 H 0.08 1.13 7.81 -51.93 -0.41 0.73 16 32 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.13 2.05 5.35 -51.93 -0.28 1.77 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -27.65 328.95 -7.74 -35.39 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.43 Total: 2.09 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.02 Total: -0.61 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 1.09 Total: -39.69 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.40 Total: -6.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.65 -7.74 -35.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357848403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.964 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds