Wall clock time and date at job start Tue Mar 31 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47061 * 218.63081 * 3 2 1 5 5 N 1.46500 * 109.47013 * 183.26879 * 4 3 2 6 6 C 1.46496 * 120.00226 * 264.92806 * 5 4 3 7 7 C 1.50701 * 109.47051 * 264.33694 * 6 5 4 8 8 H 1.07998 * 120.00592 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99778 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00139 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99745 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47045 * 59.99986 * 11 9 7 13 13 H 1.48502 * 109.46841 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47031 * 299.99762 * 11 9 7 15 15 C 1.34777 * 119.99908 * 84.93280 * 5 4 3 16 16 O 1.21282 * 119.99991 * 4.01818 * 15 5 4 17 17 C 1.50701 * 120.00250 * 183.75194 * 15 5 4 18 18 H 1.09005 * 109.38807 * 27.13543 * 17 15 5 19 19 C 1.52574 * 109.39350 * 146.93996 * 17 15 5 20 20 C 1.52587 * 110.72531 * 190.82365 * 19 17 15 21 21 C 1.53093 * 109.95673 * 289.32173 * 20 19 17 22 22 S 1.81748 * 108.84069 * 63.02454 * 21 20 19 23 23 C 1.53096 * 109.38703 * 267.43726 * 17 15 5 24 24 H 1.09000 * 109.47030 * 98.63078 * 3 2 1 25 25 H 1.09001 * 109.47157 * 338.63018 * 3 2 1 26 26 H 1.08997 * 109.47272 * 63.26965 * 4 3 2 27 27 H 1.09001 * 109.47163 * 303.27050 * 4 3 2 28 28 H 1.08998 * 109.47294 * 24.33623 * 6 5 4 29 29 H 1.09001 * 109.47340 * 144.33988 * 6 5 4 30 30 H 0.97002 * 120.00370 * 180.02562 * 10 9 7 31 31 H 1.09004 * 109.22671 * 311.13967 * 19 17 15 32 32 H 1.08998 * 109.23206 * 70.50337 * 19 17 15 33 33 H 1.08996 * 109.39084 * 49.47689 * 20 19 17 34 34 H 1.09001 * 109.38983 * 169.27638 * 20 19 17 35 35 H 1.08997 * 109.58075 * 182.83140 * 21 20 19 36 36 H 1.09003 * 109.57971 * 303.22044 * 21 20 19 37 37 H 1.09004 * 109.57738 * 296.62754 * 23 17 15 38 38 H 1.08997 * 109.58078 * 57.01339 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1278 0.9006 5 7 4.5803 1.1781 0.8395 6 6 5.3801 0.4832 1.8512 7 6 5.7653 1.4520 2.9395 8 1 5.4466 2.4823 2.8829 9 6 6.5255 1.0231 4.0068 10 7 6.9140 -0.2314 4.0755 11 14 7.0035 2.2241 5.3554 12 1 5.7769 2.7736 5.9864 13 1 7.8152 1.5199 6.3804 14 1 7.7992 3.3334 4.7710 15 6 5.1903 1.8639 -0.1474 16 8 4.5302 2.4992 -0.9422 17 6 6.6931 1.8463 -0.2600 18 1 7.0773 0.9211 0.1697 19 6 7.0920 1.9259 -1.7305 20 6 8.5816 1.6434 -1.9019 21 6 9.4021 2.8103 -1.3460 22 16 9.0881 2.9509 0.4386 23 6 7.2739 3.0389 0.5044 24 1 2.9712 0.1550 -1.0160 25 1 2.9718 -0.9562 0.3745 26 1 2.8029 0.9426 1.9276 27 1 2.7066 2.0784 0.5605 28 1 4.7960 -0.3311 2.2798 29 1 6.2808 0.0799 1.3884 30 1 7.4485 -0.5333 4.8266 31 1 6.5199 1.1917 -2.2978 32 1 6.8700 2.9235 -2.1092 33 1 8.8410 0.7307 -1.3656 34 1 8.8065 1.5171 -2.9610 35 1 10.4626 2.6252 -1.5167 36 1 9.1061 3.7343 -1.8427 37 1 6.9365 3.9674 0.0437 38 1 6.9439 3.0032 1.5426 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357848404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:01 Heat of formation + Delta-G solvation = -26.905121 kcal Electronic energy + Delta-G solvation = -20499.627889 eV Core-core repulsion = 17467.713762 eV Total energy + Delta-G solvation = -3031.914127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72944 -36.88509 -36.02277 -35.22435 -33.00632 -31.83271 -30.61583 -27.30756 -26.95459 -24.87499 -23.21156 -22.65286 -20.71072 -18.38204 -17.49258 -16.97251 -16.58096 -16.00693 -15.50585 -14.95387 -14.69314 -14.47864 -14.24710 -14.06817 -13.37133 -13.23457 -13.09934 -12.78899 -12.57383 -12.34358 -12.24617 -12.05828 -11.72840 -11.58449 -11.21271 -11.18366 -11.11109 -10.90687 -10.77175 -10.73576 -10.36364 -10.15434 -9.85668 -9.51861 -9.00714 -8.59916 -7.97738 -7.32406 -6.26455 -4.33870 2.08901 2.76675 2.81024 2.90533 3.22231 3.26215 3.27802 3.32346 3.63720 4.27147 4.32041 4.84673 4.92825 5.03905 5.08126 5.15649 5.22306 5.31123 5.37225 5.51616 5.60979 5.65605 5.76247 5.87662 5.92155 6.04695 6.13088 6.14406 6.19899 6.42696 6.47498 6.59291 7.07675 7.34109 7.66327 7.66743 7.94356 8.09947 8.66292 8.81493 9.34246 10.80295 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.007875 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.155499 B = 3554.828505 C = 5599.769691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.125 3.875 5 N -0.594 5.594 6 C 0.235 3.765 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.074 3.926 10 N -0.884 5.884 11 Si 0.889 3.111 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.527 3.473 16 O -0.568 6.568 17 C -0.100 4.100 18 H 0.113 0.887 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.089 4.089 22 S -0.256 6.256 23 C -0.067 4.067 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.267 0.733 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 1.147 -8.896 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.000 4.000 5 N -0.323 5.323 6 C 0.115 3.885 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.130 4.130 10 N -0.521 5.521 11 Si 0.716 3.284 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.313 3.687 16 O -0.449 6.449 17 C -0.123 4.123 18 H 0.131 0.869 19 C -0.149 4.149 20 C -0.158 4.158 21 C -0.237 4.237 22 S -0.028 6.028 23 C -0.215 4.215 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.263 1.366 -8.310 8.721 hybrid contribution -0.046 0.505 0.023 0.508 sum 2.217 1.871 -8.287 8.781 Atomic orbital electron populations 1.81180 1.13077 1.09167 1.09300 1.29108 0.95128 0.92756 0.92720 1.19784 0.81357 1.03245 1.04267 1.21128 0.81841 0.97359 0.99716 1.48266 1.05376 1.50943 1.27758 1.19573 0.90911 0.92608 0.85364 1.21339 1.34320 0.96415 1.06196 0.92058 1.24856 0.95225 0.95165 0.97795 1.69872 1.35944 1.14884 1.31386 0.86686 0.78772 0.81352 0.81619 1.20170 1.21022 1.19706 1.20417 0.89825 0.78223 0.80212 1.90609 1.67076 1.43630 1.43585 1.21442 0.92695 1.01630 0.96524 0.86887 1.21377 0.95335 1.03121 0.95050 1.21715 0.94619 0.98287 1.01186 1.23450 1.03430 1.01471 0.95392 1.87040 1.09528 1.97148 1.09102 1.23519 0.91879 0.98862 1.07236 0.87373 0.87033 0.89171 0.90244 0.94186 0.93927 0.92296 0.91135 0.91281 0.90351 0.91112 0.88290 0.90343 0.90531 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.34 18.54 42.15 0.78 -6.55 16 2 C 0.22 3.07 15.43 -20.76 -0.32 2.75 16 3 C -0.05 -0.55 5.99 -29.52 -0.18 -0.73 16 4 C 0.13 1.89 5.32 -4.04 -0.02 1.87 16 5 N -0.59 -10.39 2.48 -175.06 -0.43 -10.82 16 6 C 0.23 4.76 4.93 -5.20 -0.03 4.73 16 7 C -0.54 -12.57 7.50 -34.44 -0.26 -12.83 16 8 H 0.06 1.45 7.28 -52.49 -0.38 1.07 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 10 N -0.88 -22.62 13.29 55.43 0.74 -21.89 16 11 Si 0.89 19.63 29.54 -169.99 -5.02 14.60 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 C 0.53 9.34 6.56 -10.98 -0.07 9.27 16 16 O -0.57 -11.05 16.05 5.56 0.09 -10.96 16 17 C -0.10 -1.63 1.79 -91.94 -0.16 -1.79 16 18 H 0.11 1.96 5.78 -51.93 -0.30 1.66 16 19 C -0.11 -1.51 4.42 -27.16 -0.12 -1.63 16 20 C -0.12 -1.38 5.75 -26.90 -0.15 -1.54 16 21 C -0.09 -1.07 6.45 37.21 0.24 -0.83 16 22 S -0.26 -4.14 22.33 -107.50 -2.40 -6.54 16 23 C -0.07 -1.14 5.70 37.21 0.21 -0.93 16 24 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 27 H 0.08 1.25 7.52 -51.93 -0.39 0.86 16 28 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 29 H 0.04 0.90 5.93 -51.93 -0.31 0.60 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.07 0.97 8.07 -51.93 -0.42 0.56 16 33 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.14 2.70 5.54 -51.93 -0.29 2.41 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -27.07 328.34 -7.69 -34.76 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.43 Total: 2.39 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.96 Total: 0.06 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 1.08 Total: -39.26 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.40 Total: -6.54 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.07 -7.69 -34.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357848404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.855 kcal (2) G-P(sol) polarization free energy of solvation -27.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds