Wall clock time and date at job start Tue Mar 31 2020 05:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86805 * 119.99397 * 2 1 4 4 H 1.48490 * 109.47217 * 240.00026 * 3 2 1 5 5 H 1.48503 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46961 * 120.00182 * 3 2 1 7 7 C 1.40039 * 120.00542 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99899 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00012 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00145 * 179.72687 * 9 7 2 12 12 C 1.46497 * 120.00376 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46839 * 326.45842 * 12 11 9 14 14 C 1.50703 * 109.47231 * 86.44887 * 12 11 9 15 15 C 1.38238 * 119.99730 * 39.73053 * 14 12 11 16 16 C 1.38230 * 120.00050 * 179.80697 * 15 14 12 17 17 C 1.38234 * 119.99898 * 0.41971 * 16 15 14 18 18 C 1.38234 * 120.00046 * 359.81751 * 17 16 15 19 19 C 1.38228 * 120.00512 * 220.00142 * 14 12 11 20 20 C 1.50699 * 109.47383 * 206.45181 * 12 11 9 21 21 C 1.38224 * 119.61699 * 117.12966 * 20 12 11 22 22 C 1.38632 * 119.16359 * 179.97438 * 21 20 12 23 23 C 1.38668 * 118.41618 * 0.02562 * 22 21 20 24 24 C 1.38189 * 119.16733 * 0.02562 * 23 22 21 25 25 N 1.31854 * 119.61858 * 296.85552 * 20 12 11 26 26 H 0.96993 * 120.00716 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99848 * 359.97438 * 11 9 7 28 28 H 1.08007 * 119.99934 * 359.97438 * 15 14 12 29 29 H 1.08001 * 120.00058 * 180.20572 * 16 15 14 30 30 H 1.08006 * 120.00031 * 179.78527 * 17 16 15 31 31 H 1.08000 * 119.99858 * 179.97438 * 18 17 16 32 32 H 1.08011 * 119.99954 * 359.97438 * 19 14 12 33 33 H 1.08005 * 120.41872 * 0.02562 * 21 20 12 34 34 H 1.07993 * 120.79008 * 180.02562 * 22 21 20 35 35 H 1.08004 * 120.42077 * 180.02562 * 23 22 21 36 36 H 1.08000 * 119.61866 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.0943 1.6967 -1.2124 5 1 1.2755 2.7465 0.0006 6 1 3.0943 1.6966 1.2125 7 6 2.0070 -1.2127 -0.0005 8 1 3.0871 -1.2126 -0.0010 9 6 1.2752 -2.4804 -0.0017 10 8 0.0584 -2.4805 -0.0017 11 7 1.9492 -3.6476 -0.0078 12 6 1.2169 -4.9164 -0.0083 13 1 0.2957 -4.8044 0.5636 14 6 0.8836 -5.3035 -1.4262 15 6 1.8083 -5.1005 -2.4335 16 6 1.5043 -5.4592 -3.7334 17 6 0.2723 -6.0129 -4.0274 18 6 -0.6542 -6.2113 -3.0209 19 6 -0.3486 -5.8563 -1.7204 20 6 2.0700 -5.9892 0.6180 21 6 1.6479 -6.6055 1.7810 22 6 2.4398 -7.5915 2.3488 23 6 3.6324 -7.9218 1.7231 24 6 3.9895 -7.2616 0.5629 25 7 3.2079 -6.3328 0.0473 26 1 -0.4851 0.8399 0.0004 27 1 2.9192 -3.6475 -0.0118 28 1 2.7694 -4.6641 -2.2044 29 1 2.2280 -5.3036 -4.5198 30 1 0.0334 -6.2900 -5.0436 31 1 -1.6169 -6.6436 -3.2507 32 1 -1.0726 -6.0113 -0.9340 33 1 0.7124 -6.3230 2.2411 34 1 2.1352 -8.0904 3.2569 35 1 4.2740 -8.6855 2.1372 36 1 4.9170 -7.5128 0.0697 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373500627.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:04 Heat of formation + Delta-G solvation = 23.423614 kcal Electronic energy + Delta-G solvation = -21223.015973 eV Core-core repulsion = 18057.840312 eV Total energy + Delta-G solvation = -3165.175660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28719 -38.68555 -37.06211 -34.21424 -32.43621 -32.23875 -30.91748 -30.39700 -30.11941 -26.78073 -25.17765 -23.45852 -22.40657 -21.98374 -20.78730 -19.31910 -17.58418 -16.67613 -16.41385 -16.00403 -15.43660 -15.23386 -14.87585 -14.52576 -14.07796 -13.89507 -13.45292 -13.15859 -12.98153 -12.90685 -12.63152 -12.15491 -12.09304 -11.73754 -11.34984 -11.14035 -10.99704 -10.66841 -10.49666 -10.43491 -10.23612 -9.79385 -9.31731 -8.97753 -8.82894 -8.38368 -8.22386 -7.60193 -7.55191 -6.16702 -4.62203 1.17087 1.37476 1.88133 1.95535 3.17617 3.22299 3.24243 3.87332 4.13472 4.23496 4.50373 4.59858 4.70189 4.88422 5.11026 5.13335 5.26797 5.36230 5.40161 5.46651 5.61360 5.66236 5.79924 5.87987 5.98204 6.05850 6.11063 6.21788 6.33688 6.47367 6.58108 6.78255 6.93826 6.99744 7.21036 7.45304 7.51990 7.92291 8.04698 8.16142 8.34424 9.04288 9.53241 10.61276 10.79458 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.005930 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.273773 B = 4720.796860 C = 5885.100530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.575 6.575 11 N -0.750 5.750 12 C 0.242 3.758 13 H 0.098 0.902 14 C -0.072 4.072 15 C -0.073 4.073 16 C -0.131 4.131 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.108 4.108 20 C 0.139 3.861 21 C -0.160 4.160 22 C -0.076 4.076 23 C -0.182 4.182 24 C 0.098 3.902 25 N -0.467 5.467 26 H 0.268 0.732 27 H 0.385 0.615 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 -14.763 0.140 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.580 4.580 8 H 0.085 0.915 9 C 0.362 3.638 10 O -0.458 6.458 11 N -0.404 5.404 12 C 0.134 3.866 13 H 0.116 0.884 14 C -0.074 4.074 15 C -0.092 4.092 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.127 4.127 20 C 0.001 3.999 21 C -0.180 4.180 22 C -0.102 4.102 23 C -0.202 4.202 24 C -0.059 4.059 25 N -0.176 5.176 26 H 0.079 0.921 27 H 0.217 0.783 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.345 -14.197 -0.614 14.860 hybrid contribution 0.687 0.333 0.776 1.089 sum 5.032 -13.864 0.162 14.750 Atomic orbital electron populations 1.70002 1.06999 1.27339 1.35225 1.25678 0.94604 1.00181 0.92634 0.86449 0.79837 0.81113 0.79444 1.19272 1.20567 1.19326 1.20809 0.93541 0.89221 1.54396 0.91510 1.18232 0.87248 0.82166 0.76173 1.90601 1.13950 1.86465 1.54745 1.46222 1.08718 1.03329 1.82180 1.18282 0.94178 0.82670 0.91422 0.88412 1.20224 0.93919 0.97229 0.96054 1.20925 0.99356 0.96974 0.91914 1.21069 0.96954 1.00307 0.96603 1.20999 0.94380 1.00789 0.98569 1.20958 0.99065 1.01666 0.93138 1.20968 0.96164 0.98942 0.96626 1.21450 0.91852 0.95047 0.91531 1.22021 1.01604 0.97518 0.96850 1.21531 0.93896 0.95773 0.99049 1.22088 0.98071 1.02121 0.97970 1.22750 0.98331 0.91818 0.93028 1.67479 1.04325 1.13591 1.32238 0.92076 0.78307 0.85870 0.86738 0.86941 0.86764 0.86585 0.84642 0.85027 0.85187 0.82998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.06 11.83 55.55 0.66 -22.40 16 2 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.34 29.56 -169.99 -5.02 15.32 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -15.42 9.54 -35.63 -0.34 -15.76 16 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 9 C 0.56 15.80 7.72 -12.99 -0.10 15.70 16 10 O -0.58 -18.38 14.66 5.20 0.08 -18.31 16 11 N -0.75 -17.12 4.28 -57.48 -0.25 -17.37 16 12 C 0.24 4.83 2.51 -70.24 -0.18 4.65 16 13 H 0.10 2.09 7.12 -51.93 -0.37 1.72 16 14 C -0.07 -1.42 4.85 -104.62 -0.51 -1.92 16 15 C -0.07 -1.39 8.84 -39.58 -0.35 -1.74 16 16 C -0.13 -2.19 10.05 -39.59 -0.40 -2.59 16 17 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 18 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 19 C -0.11 -1.96 9.67 -39.59 -0.38 -2.35 16 20 C 0.14 2.33 5.61 -82.59 -0.46 1.86 16 21 C -0.16 -2.25 9.71 -39.44 -0.38 -2.63 16 22 C -0.08 -0.87 10.18 -39.28 -0.40 -1.27 16 23 C -0.18 -1.95 10.11 -39.44 -0.40 -2.35 16 24 C 0.10 1.23 11.18 -17.55 -0.20 1.03 16 25 N -0.47 -7.40 9.57 -9.47 -0.09 -7.49 16 26 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 27 H 0.38 8.19 8.52 -40.82 -0.35 7.84 16 28 H 0.12 2.34 7.71 -52.48 -0.40 1.94 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.12 1.92 8.04 -52.48 -0.42 1.50 16 33 H 0.14 1.74 7.95 -52.48 -0.42 1.33 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -34.86 320.60 -8.83 -43.69 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.04 Total: 11.60 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -4.99 Total: -9.89 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.32 Total: -47.25 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.08 Total: -18.31 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.86 -8.83 -43.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373500627.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.116 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds