Wall clock time and date at job start Tue Mar 31 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86807 * 120.00145 * 2 1 4 4 H 1.48501 * 109.46759 * 269.99710 * 3 2 1 5 5 H 1.48495 * 109.46748 * 29.99492 * 3 2 1 6 6 H 1.48496 * 109.47051 * 149.99392 * 3 2 1 7 7 C 1.40053 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99770 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99998 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00210 * 179.97438 * 9 7 2 12 12 C 1.46497 * 120.00416 * 180.02562 * 11 9 7 13 13 H 1.08998 * 109.47467 * 34.99665 * 12 11 9 14 14 C 1.50706 * 109.46867 * 275.00257 * 12 11 9 15 15 C 1.38234 * 120.00196 * 140.00054 * 14 12 11 16 16 C 1.38235 * 119.99814 * 179.97438 * 15 14 12 17 17 C 1.38230 * 120.00326 * 359.97438 * 16 15 14 18 18 C 1.38243 * 120.00092 * 359.97438 * 17 16 15 19 19 C 1.38234 * 119.99618 * 359.97438 * 18 17 16 20 20 C 1.50696 * 109.47300 * 155.00230 * 12 11 9 21 21 C 1.38228 * 119.61455 * 244.72346 * 20 12 11 22 22 C 1.38636 * 119.15960 * 179.75534 * 21 20 12 23 23 C 1.38667 * 118.41744 * 0.50667 * 22 21 20 24 24 C 1.38186 * 119.16434 * 359.73920 * 23 22 21 25 25 N 1.31853 * 119.61939 * 64.99624 * 20 12 11 26 26 H 0.97003 * 120.00171 * 0.02562 * 1 2 3 27 27 H 0.97006 * 119.99615 * 0.02562 * 11 9 7 28 28 H 1.08000 * 119.99516 * 0.24808 * 15 14 12 29 29 H 1.08000 * 119.99297 * 179.97438 * 16 15 14 30 30 H 1.08001 * 120.00350 * 179.97438 * 17 16 15 31 31 H 1.07999 * 120.00235 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.99804 * 179.97438 * 19 18 17 33 33 H 1.07998 * 120.42311 * 359.97438 * 21 20 12 34 34 H 1.07990 * 120.78963 * 180.26944 * 22 21 20 35 35 H 1.08006 * 120.41828 * 179.71079 * 23 22 21 36 36 H 1.08002 * 119.61215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0463 -1.4001 5 1 1.4381 2.6527 0.6999 6 1 3.5382 1.4402 0.7002 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9489 -3.6477 0.0005 12 6 1.2164 -4.9165 0.0000 13 1 0.3059 -4.8101 -0.5897 14 6 0.8574 -5.2898 1.4152 15 6 -0.3801 -5.8398 1.6923 16 6 -0.7091 -6.1828 2.9903 17 6 0.1996 -5.9762 4.0113 18 6 1.4376 -5.4271 3.7342 19 6 1.7670 -5.0852 2.4359 20 6 2.0807 -5.9952 -0.6003 21 6 1.6989 -6.5958 -1.7853 22 6 2.5037 -7.5836 -2.3319 23 6 3.6619 -7.9393 -1.6575 24 6 3.9762 -7.2981 -0.4744 25 7 3.1894 -6.3590 0.0136 26 1 -0.4850 0.8401 -0.0004 27 1 2.9189 -3.6477 0.0009 28 1 -1.0882 -6.0057 0.8938 29 1 -1.6762 -6.6121 3.2068 30 1 -0.0576 -6.2438 5.0256 31 1 2.1475 -5.2654 4.5319 32 1 2.7341 -4.6558 2.2194 33 1 0.7872 -6.2969 -2.2810 34 1 2.2329 -8.0672 -3.2587 35 1 4.3101 -8.7081 -2.0517 36 1 4.8763 -7.5697 0.0570 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373500628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:06 Heat of formation + Delta-G solvation = 23.566746 kcal Electronic energy + Delta-G solvation = -21229.680622 eV Core-core repulsion = 18064.511169 eV Total energy + Delta-G solvation = -3165.169454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29017 -38.67736 -37.05809 -34.21316 -32.43843 -32.24107 -30.91403 -30.39027 -30.11310 -26.78002 -25.17620 -23.46082 -22.40516 -21.97301 -20.78623 -19.32040 -17.58527 -16.66500 -16.42630 -15.99763 -15.44014 -15.23678 -14.86517 -14.52287 -14.07510 -13.89412 -13.44359 -13.15956 -12.97581 -12.90113 -12.63819 -12.15463 -12.08893 -11.73755 -11.34731 -11.12797 -11.01708 -10.65948 -10.48903 -10.44033 -10.20923 -9.79725 -9.31500 -8.98472 -8.83752 -8.37131 -8.21443 -7.59864 -7.55030 -6.16935 -4.62217 1.16628 1.37180 1.89247 1.96758 3.15566 3.22468 3.26077 3.86808 4.13479 4.24234 4.50287 4.59646 4.70740 4.88163 5.11138 5.12946 5.26300 5.36952 5.40857 5.47354 5.62163 5.65944 5.79766 5.87945 5.98403 6.06467 6.11905 6.21568 6.33742 6.48345 6.59077 6.77952 6.94809 7.00801 7.22154 7.45310 7.53109 7.91955 8.04778 8.15752 8.34507 9.04307 9.53042 10.61131 10.79414 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.005935 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.334877 B = 4716.284388 C = 5882.789376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.575 6.575 11 N -0.750 5.750 12 C 0.242 3.758 13 H 0.097 0.903 14 C -0.071 4.071 15 C -0.108 4.108 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.131 4.131 19 C -0.073 4.073 20 C 0.139 3.861 21 C -0.159 4.159 22 C -0.077 4.077 23 C -0.182 4.182 24 C 0.098 3.902 25 N -0.467 5.467 26 H 0.268 0.732 27 H 0.384 0.616 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 -14.751 -0.146 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.362 3.638 10 O -0.457 6.457 11 N -0.405 5.405 12 C 0.135 3.865 13 H 0.115 0.885 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.091 4.091 20 C 0.001 3.999 21 C -0.180 4.180 22 C -0.103 4.103 23 C -0.202 4.202 24 C -0.059 4.059 25 N -0.176 5.176 26 H 0.079 0.921 27 H 0.216 0.784 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.373 -14.195 0.625 14.866 hybrid contribution 0.702 0.348 -0.799 1.119 sum 5.074 -13.847 -0.174 14.749 Atomic orbital electron populations 1.70015 1.07005 1.27218 1.35299 1.25683 0.94602 1.00193 0.92635 0.86391 0.80212 0.81488 0.78788 1.19780 1.20463 1.18906 1.20844 0.93564 0.89203 1.54320 0.91471 1.18240 0.87255 0.82158 0.76180 1.90604 1.13944 1.86461 1.54700 1.46232 1.08684 1.03332 1.82226 1.18281 0.93905 0.82638 0.91680 0.88520 1.20211 0.93893 0.97229 0.96011 1.20961 0.96077 0.98973 0.96680 1.20953 0.99109 1.01703 0.93073 1.20994 0.94453 1.00797 0.98500 1.21070 0.96838 1.00381 0.96652 1.20918 0.99377 0.96957 0.91833 1.21440 0.92083 0.95105 0.91304 1.22025 1.01514 0.97584 0.96830 1.21533 0.93859 0.95695 0.99176 1.22090 0.98463 1.02126 0.97543 1.22750 0.98064 0.91850 0.93281 1.67487 1.04072 1.13027 1.32985 0.92138 0.78356 0.86622 0.86784 0.86957 0.86753 0.85893 0.84637 0.85024 0.85183 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.05 11.83 55.55 0.66 -22.39 16 2 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.33 29.56 -169.99 -5.02 15.31 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.54 -15.40 9.54 -35.63 -0.34 -15.74 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.56 15.79 7.70 -12.99 -0.10 15.69 16 10 O -0.57 -18.36 14.68 5.20 0.08 -18.29 16 11 N -0.75 -17.10 4.31 -57.48 -0.25 -17.35 16 12 C 0.24 4.83 2.49 -70.23 -0.18 4.66 16 13 H 0.10 2.06 7.17 -51.93 -0.37 1.69 16 14 C -0.07 -1.41 4.83 -104.62 -0.50 -1.91 16 15 C -0.11 -1.97 9.67 -39.58 -0.38 -2.36 16 16 C -0.13 -2.12 10.05 -39.59 -0.40 -2.52 16 17 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 18 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 19 C -0.07 -1.38 8.78 -39.58 -0.35 -1.73 16 20 C 0.14 2.31 5.61 -82.59 -0.46 1.85 16 21 C -0.16 -2.24 9.71 -39.44 -0.38 -2.62 16 22 C -0.08 -0.87 10.18 -39.28 -0.40 -1.26 16 23 C -0.18 -1.94 10.11 -39.44 -0.40 -2.34 16 24 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 25 N -0.47 -7.37 9.54 -9.47 -0.09 -7.46 16 26 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 27 H 0.38 8.17 8.55 -40.82 -0.35 7.82 16 28 H 0.12 1.93 8.04 -52.49 -0.42 1.51 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.12 2.35 7.72 -52.48 -0.41 1.95 16 33 H 0.14 1.74 7.95 -52.49 -0.42 1.33 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -34.88 320.60 -8.83 -43.71 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -4.05 Total: 11.54 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -4.98 Total: -9.91 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.32 Total: -47.20 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.08 Total: -18.29 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.88 -8.83 -43.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373500628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.278 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds