Wall clock time and date at job start Tue Mar 31 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00122 * 2 1 4 4 H 1.48503 * 109.46632 * 269.99885 * 3 2 1 5 5 H 1.48500 * 109.47031 * 29.99652 * 3 2 1 6 6 H 1.48502 * 109.47233 * 149.99884 * 3 2 1 7 7 C 1.37875 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00686 * 0.02562 * 7 2 1 9 9 C 1.50708 * 120.00007 * 180.02562 * 7 2 1 10 10 S 1.81402 * 109.47102 * 180.02562 * 9 7 2 11 11 C 1.81402 * 102.99877 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.46947 * 180.02562 * 11 10 9 13 13 N 1.29951 * 126.28996 * 89.97712 * 12 11 10 14 14 O 1.21302 * 110.25318 * 180.02562 * 13 12 11 15 15 C 1.33643 * 109.80993 * 359.97438 * 14 13 12 16 16 C 1.50699 * 126.54859 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47078 * 300.02514 * 16 15 14 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.47083 * 60.02388 * 16 15 14 22 22 N 1.31122 * 106.89698 * 0.22934 * 15 14 13 23 23 H 0.96998 * 120.00010 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46752 * 60.00384 * 9 7 2 25 25 H 1.09001 * 109.47021 * 300.00471 * 9 7 2 26 26 H 1.08998 * 109.47237 * 60.00180 * 11 10 9 27 27 H 1.09002 * 109.47029 * 299.99883 * 11 10 9 28 28 H 1.09002 * 109.46959 * 180.02562 * 16 15 14 29 29 H 1.08996 * 109.47853 * 300.00179 * 17 16 15 30 30 H 1.09002 * 109.47153 * 60.00207 * 17 16 15 31 31 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 33 33 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 34 34 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 35 35 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 37 37 H 1.08992 * 109.47399 * 299.99938 * 21 16 15 38 38 H 1.09004 * 109.46724 * 60.00424 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1161 -2.9043 0.0010 11 6 5.9186 -2.6999 0.0009 12 6 6.5778 -4.0550 0.0002 13 7 6.9138 -4.7463 -1.0477 14 8 7.4235 -5.7950 -0.7132 15 6 7.4627 -5.8745 0.6203 16 6 8.0164 -7.0146 1.4355 17 6 7.2504 -8.2971 1.1048 18 6 7.8130 -9.4548 1.9320 19 6 9.2945 -9.6457 1.6006 20 6 10.0605 -8.3632 1.9313 21 6 9.4979 -7.2057 1.1046 22 7 6.9223 -4.7733 1.0838 23 1 -0.4850 0.8400 -0.0004 24 1 3.8744 -0.6801 0.8912 25 1 3.8752 -0.6804 -0.8888 26 1 6.2218 -2.1485 0.8909 27 1 6.2217 -2.1483 -0.8891 28 1 7.9071 -6.7894 2.4964 29 1 6.1950 -8.1610 1.3405 30 1 7.3597 -8.5223 0.0440 31 1 7.2676 -10.3686 1.6961 32 1 7.7040 -9.2298 2.9929 33 1 9.4034 -9.8706 0.5396 34 1 9.6953 -10.4702 2.1902 35 1 11.1159 -8.4993 1.6957 36 1 9.9514 -8.1382 2.9922 37 1 9.6072 -7.4309 0.0438 38 1 10.0436 -6.2920 1.3403 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413011903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:27 Heat of formation + Delta-G solvation = 37.125481 kcal Electronic energy + Delta-G solvation = -19095.735165 eV Core-core repulsion = 16066.597614 eV Total energy + Delta-G solvation = -3029.137551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.58060 -39.00524 -36.03367 -33.65627 -33.08053 -31.21167 -30.74023 -29.48687 -28.93686 -24.46205 -23.52332 -23.04303 -22.54109 -21.23648 -19.95583 -18.09031 -17.55411 -16.93516 -16.14307 -15.58953 -15.29102 -14.63282 -14.62379 -14.38331 -14.04135 -13.64710 -13.35849 -13.13398 -12.93433 -12.64570 -12.58966 -12.43894 -12.27068 -11.66610 -11.62669 -11.52366 -11.05501 -10.91630 -10.86138 -10.79922 -10.74092 -10.47853 -10.21511 -9.83560 -9.58352 -9.06302 -8.74725 -6.91521 -6.21032 -4.23969 1.11323 1.81930 2.75071 2.82183 3.19353 3.26521 3.27371 3.43286 3.60178 4.01526 4.28024 4.28072 4.28817 4.44123 4.73411 4.79378 4.92524 5.00420 5.01412 5.07203 5.09892 5.21115 5.34182 5.42703 5.53505 5.61712 5.66409 5.67524 5.71394 5.76480 5.84755 5.86557 5.99571 6.06274 6.50779 6.62791 7.37005 8.21745 8.26406 8.81014 9.33772 10.90960 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043777 B = 0.002902 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.450492 B = 9645.977418 C = 9908.773664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.084 0.916 9 C 0.046 3.954 10 S -0.235 6.235 11 C -0.020 4.020 12 C 0.199 3.801 13 N -0.373 5.373 14 O 0.081 5.919 15 C 0.177 3.823 16 C 0.010 3.990 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.117 4.117 22 N -0.468 5.468 23 H 0.269 0.731 24 H 0.039 0.961 25 H 0.033 0.967 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.847 -17.084 3.761 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.124 4.124 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.102 0.898 9 C -0.101 4.101 10 S -0.010 6.010 11 C -0.169 4.169 12 C -0.074 4.074 13 N -0.080 5.080 14 O 0.020 5.980 15 C -0.044 4.044 16 C -0.010 4.010 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.155 4.155 22 N -0.201 5.201 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.827 -17.298 3.249 27.268 hybrid contribution 0.969 2.069 -0.002 2.285 sum 21.796 -15.229 3.247 26.787 Atomic orbital electron populations 1.69857 1.06151 1.27373 1.49302 1.24840 0.94770 0.98712 0.94060 0.86800 0.80328 0.83525 0.78852 1.19823 1.20704 1.19009 1.20422 0.86682 0.95396 1.52961 0.89787 1.21501 1.01257 0.87968 0.99422 1.87080 0.96720 1.19286 1.97938 1.21484 0.98641 0.90097 1.06649 1.24910 0.99756 0.99238 0.83501 1.74670 1.14841 0.95086 1.23409 1.85267 1.57320 1.30666 1.24701 1.28775 0.96496 0.96739 0.82419 1.19888 0.95318 0.87782 0.97994 1.21664 0.99803 0.92696 1.01517 1.21516 0.95854 0.97906 1.00163 1.21599 0.95168 0.97463 1.01887 1.21505 0.99562 0.94224 1.00144 1.21643 0.92754 0.99584 1.01517 1.71892 1.15413 1.03476 1.29290 0.92132 0.94301 0.94841 0.87572 0.88041 0.86650 0.90800 0.90684 0.91200 0.91432 0.91628 0.91704 0.91310 0.91464 0.90709 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 3 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.87 9.68 -34.44 -0.33 -15.20 16 8 H 0.08 2.67 7.96 -52.49 -0.42 2.25 16 9 C 0.05 1.13 4.77 36.01 0.17 1.30 16 10 S -0.24 -5.23 21.64 -107.50 -2.33 -7.56 16 11 C -0.02 -0.35 6.57 36.00 0.24 -0.11 16 12 C 0.20 3.46 7.48 -156.37 -1.17 2.29 16 13 N -0.37 -6.34 12.16 30.90 0.38 -5.96 16 14 O 0.08 1.15 11.31 18.10 0.20 1.36 16 15 C 0.18 2.27 7.02 -13.06 -0.09 2.18 16 16 C 0.01 0.09 2.66 -91.77 -0.24 -0.16 16 17 C -0.12 -0.87 5.19 -26.73 -0.14 -1.01 16 18 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 19 C -0.12 -0.59 5.92 -26.73 -0.16 -0.75 16 20 C -0.12 -0.58 5.92 -26.76 -0.16 -0.74 16 21 C -0.12 -0.76 5.18 -26.76 -0.14 -0.90 16 22 N -0.47 -7.51 11.55 -9.87 -0.11 -7.62 16 23 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.04 0.92 7.20 -51.92 -0.37 0.55 16 25 H 0.03 0.78 7.57 -51.92 -0.39 0.39 16 26 H 0.11 1.72 8.14 -51.92 -0.42 1.30 16 27 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 28 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 327.49 15.07 4.94 4.94 Total: -1.00 -32.13 327.49 -8.95 -41.07 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -5.85 Total: -4.62 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.28 Total: -11.68 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 1.04 Total: -39.80 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -2.33 Total: -7.56 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.13 -8.95 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.200 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds