Wall clock time and date at job start Tue Mar 31 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35986 * 116.99959 * 179.97438 * 3 2 1 5 5 C 1.38699 * 119.99517 * 359.72674 * 4 3 2 6 6 C 1.38142 * 119.99254 * 179.76668 * 5 4 3 7 7 C 1.38696 * 120.00185 * 0.50815 * 6 5 4 8 8 O 1.35972 * 119.99914 * 179.72775 * 7 6 5 9 9 C 1.42905 * 117.00352 * 0.02562 * 8 7 6 10 10 C 1.52996 * 109.47242 * 180.02562 * 9 8 7 11 11 S 1.81395 * 109.47097 * 179.97438 * 10 9 8 12 12 C 1.81406 * 103.00247 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46890 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00252 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99541 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00280 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99989 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47139 * 60.00183 * 17 15 13 19 19 H 1.48501 * 109.47216 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47386 * 299.99843 * 17 15 13 21 21 C 1.38698 * 120.00033 * 359.73985 * 7 6 5 22 22 C 1.38133 * 119.99925 * 0.02562 * 21 7 6 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07991 * 120.00693 * 359.97438 * 5 4 3 29 29 H 1.08002 * 119.99354 * 180.22680 * 6 5 4 30 30 H 1.09001 * 109.46474 * 300.00207 * 9 8 7 31 31 H 1.08997 * 109.46754 * 60.00269 * 9 8 7 32 32 H 1.08998 * 109.47600 * 300.00027 * 10 9 8 33 33 H 1.09002 * 109.47560 * 59.99846 * 10 9 8 34 34 H 1.08998 * 109.47299 * 300.00601 * 12 11 10 35 35 H 1.09002 * 109.46317 * 60.00713 * 12 11 10 36 36 H 0.96995 * 120.00257 * 180.02562 * 16 15 13 37 37 H 1.07993 * 119.99998 * 179.97438 * 21 7 6 38 38 H 1.07998 * 120.00006 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3544 1.5256 0.0005 5 6 4.1992 0.4257 0.0068 6 6 5.5687 0.6068 0.0025 7 6 6.0988 1.8885 0.0025 8 8 7.4468 2.0667 0.0039 9 6 8.2569 0.8894 0.0046 10 6 9.7343 1.2870 0.0067 11 16 10.7626 -0.2073 0.0084 12 6 12.4501 0.4584 0.0100 13 6 13.4387 -0.6789 0.0109 14 1 13.0872 -1.7001 0.0101 15 6 14.7922 -0.4158 0.0127 16 7 15.2203 0.8277 0.0132 17 14 16.0177 -1.8254 0.0145 18 1 15.8159 -2.6584 -1.1982 19 1 17.3991 -1.2804 0.0157 20 1 15.8126 -2.6582 1.2268 21 6 5.2538 2.9884 0.0015 22 6 3.8844 2.8073 0.0009 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7866 -0.5723 0.0116 29 1 6.2266 -0.2497 0.0036 30 1 8.0386 0.2988 0.8944 31 1 8.0405 0.2990 -0.8856 32 1 9.9529 1.8779 -0.8827 33 1 9.9505 1.8774 0.8972 34 1 12.6005 1.0695 -0.8799 35 1 12.5984 1.0700 0.9001 36 1 16.1724 1.0129 0.0141 37 1 5.6666 3.9863 0.0020 38 1 3.2265 3.6637 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:59 Heat of formation + Delta-G solvation = -67.166476 kcal Electronic energy + Delta-G solvation = -18268.056830 eV Core-core repulsion = 15202.104089 eV Total energy + Delta-G solvation = -3065.952741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55211 -39.17635 -36.65393 -33.18900 -32.23826 -31.72907 -30.97277 -28.60929 -28.49460 -24.62315 -23.97637 -22.96233 -21.79369 -21.56549 -18.69738 -17.93477 -16.59077 -16.41441 -16.32985 -16.09307 -15.29500 -15.01451 -14.48038 -14.35125 -13.84809 -13.78682 -13.74844 -13.32281 -12.93206 -12.64845 -12.48779 -12.33971 -12.30724 -12.03988 -11.83434 -11.61510 -11.12088 -10.86948 -10.82455 -10.75451 -10.38670 -10.06366 -9.64227 -9.25488 -8.97930 -8.64517 -7.86164 -6.80481 -6.22737 -4.27690 1.07805 1.32533 2.23409 2.95287 3.26274 3.29582 3.33129 3.53882 3.57661 3.75904 4.32733 4.49232 4.54888 4.61209 4.71175 4.86162 4.97932 5.01119 5.01814 5.11722 5.14327 5.27695 5.34274 5.39694 5.45321 5.62385 5.70375 5.84444 5.87373 6.03752 6.12019 6.20216 6.41564 7.04123 7.06288 7.13816 7.40785 7.70961 7.95749 8.73612 9.35518 10.88459 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.048001 B = 0.002263 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.182809 B =12370.900096 C =12917.728318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.086 3.914 5 C -0.167 4.167 6 C -0.169 4.169 7 C 0.103 3.897 8 O -0.314 6.314 9 C 0.082 3.918 10 C -0.095 4.095 11 S -0.295 6.295 12 C 0.096 3.904 13 C -0.515 4.515 14 H 0.067 0.933 15 C 0.066 3.934 16 N -0.892 5.892 17 Si 0.909 3.091 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.115 4.115 22 C -0.112 4.112 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.267 0.733 37 H 0.138 0.862 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.927 1.082 -0.022 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.042 3.958 5 C -0.186 4.186 6 C -0.188 4.188 7 C 0.057 3.943 8 O -0.229 6.229 9 C 0.006 3.994 10 C -0.243 4.243 11 S -0.070 6.070 12 C -0.051 4.051 13 C -0.555 4.555 14 H 0.086 0.914 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.735 3.265 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.133 4.133 22 C -0.131 4.131 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.130 0.469 -0.021 26.134 hybrid contribution 1.245 0.116 0.001 1.250 sum -24.885 0.585 -0.020 24.892 Atomic orbital electron populations 1.21769 0.92816 1.02815 1.03471 1.22751 0.95795 0.82220 1.01351 1.86057 1.18933 1.28974 1.89389 1.18840 0.82302 0.94028 1.00675 1.21030 0.93455 0.98165 1.05922 1.21155 0.95637 0.96540 1.05463 1.18929 0.83202 0.93505 0.98637 1.86077 1.13690 1.34417 1.88666 1.22489 0.88770 0.85937 1.02191 1.23094 0.94362 1.01116 1.05706 1.86516 1.08527 1.13765 1.98149 1.21083 0.84600 0.99046 1.00375 1.20618 0.89793 0.92303 1.52741 0.91440 1.24968 0.98054 0.96254 0.94573 1.69941 1.15347 1.18359 1.49324 0.86379 0.79474 0.81630 0.78970 1.19882 1.21024 1.19877 1.20265 0.91216 0.98102 1.03740 1.20200 0.94057 0.94994 1.03846 0.91546 0.90425 0.91552 0.92132 0.92137 0.85339 0.84859 0.91287 0.91280 0.89782 0.89785 0.94362 0.94361 0.92358 0.84398 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.27 10.14 -19.70 -0.20 -3.47 16 4 C 0.09 0.95 6.69 -39.24 -0.26 0.69 16 5 C -0.17 -1.78 9.03 -39.45 -0.36 -2.14 16 6 C -0.17 -2.01 9.03 -39.45 -0.36 -2.37 16 7 C 0.10 1.35 6.69 -39.24 -0.26 1.09 16 8 O -0.31 -4.60 10.14 -19.65 -0.20 -4.80 16 9 C 0.08 1.19 4.75 37.16 0.18 1.37 16 10 C -0.09 -1.62 6.31 37.16 0.23 -1.39 16 11 S -0.30 -6.29 21.66 -107.50 -2.33 -8.61 16 12 C 0.10 2.47 5.70 36.01 0.21 2.67 16 13 C -0.52 -14.41 9.13 -34.44 -0.31 -14.72 16 14 H 0.07 1.88 7.71 -52.49 -0.40 1.47 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 17 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.11 -1.31 9.98 -39.45 -0.39 -1.71 16 22 C -0.11 -1.20 9.98 -39.45 -0.39 -1.59 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 27 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 28 H 0.13 1.09 6.29 -52.49 -0.33 0.76 16 29 H 0.13 1.47 6.29 -52.49 -0.33 1.14 16 30 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 31 H 0.07 0.95 7.66 -51.93 -0.40 0.56 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -29.98 336.91 -8.77 -38.75 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.60 Total: -1.87 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -1.24 Total: -16.20 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.74 Total: -25.06 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.40 Total: -8.27 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -6.29 SS G_CDS: -2.33 Total: -8.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.98 -8.77 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.416 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds