Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.35995 * 117.00081 * 179.97438 * 3 2 1 5 5 C 1.38558 * 120.07405 * 359.96402 * 4 3 2 6 6 C 1.38247 * 119.99917 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.14468 * 359.97438 * 6 5 4 8 8 C 1.38241 * 120.14765 * 0.02562 * 7 6 5 9 9 C 1.38563 * 119.99765 * 359.97368 * 8 7 6 10 10 O 1.35999 * 120.07024 * 180.02562 * 9 8 7 11 11 C 1.42897 * 116.99765 * 359.97438 * 10 9 8 12 12 C 1.53005 * 109.46824 * 180.02562 * 11 10 9 13 13 S 1.81408 * 109.46959 * 179.97438 * 12 11 10 14 14 C 1.81403 * 102.99736 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46882 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99967 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99785 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99861 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47328 * 60.00360 * 19 17 15 21 21 H 1.48507 * 109.47163 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47211 * 300.00068 * 19 17 15 23 23 H 1.09001 * 109.47024 * 59.99715 * 1 2 3 24 24 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46921 * 299.99907 * 1 2 3 26 26 H 1.09003 * 109.46921 * 240.00093 * 2 1 3 27 27 H 1.09001 * 109.47024 * 120.00285 * 2 1 3 28 28 H 1.07995 * 120.00001 * 0.03822 * 5 4 3 29 29 H 1.07998 * 119.92703 * 180.27362 * 6 5 4 30 30 H 1.08004 * 119.92416 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.99988 * 180.02562 * 8 7 6 32 32 H 1.08996 * 109.47596 * 299.99815 * 11 10 9 33 33 H 1.09004 * 109.47087 * 60.00573 * 11 10 9 34 34 H 1.08998 * 109.47514 * 299.99947 * 12 11 10 35 35 H 1.08996 * 109.47041 * 60.00092 * 12 11 10 36 36 H 1.08999 * 109.47284 * 300.00277 * 14 13 12 37 37 H 1.09005 * 109.47131 * 60.00474 * 14 13 12 38 38 H 0.97001 * 120.00021 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 0.0005 5 6 4.2000 0.4275 0.0018 6 6 5.5703 0.6104 0.0029 7 6 6.1004 1.8873 0.0022 8 6 5.2625 2.9868 0.0009 9 6 3.8881 2.8105 -0.0002 10 8 3.0625 3.8912 -0.0020 11 6 3.6804 5.1796 -0.0020 12 6 2.6002 6.2632 -0.0035 13 16 3.3846 7.8990 -0.0028 14 6 1.9672 9.0311 -0.0055 15 6 2.4616 10.4548 -0.0058 16 1 3.5223 10.6581 -0.0041 17 6 1.5597 11.4976 -0.0083 18 7 0.2681 11.2500 -0.0098 19 14 2.1724 13.2623 -0.0094 20 1 2.9977 13.4990 -1.2210 21 1 1.0121 14.1892 -0.0115 22 1 2.9944 13.5017 1.2039 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7885 -0.5709 0.0018 29 1 6.2282 -0.2461 -0.0006 30 1 7.1715 2.0260 0.0035 31 1 5.6791 3.9832 -0.0001 32 1 4.2996 5.2857 0.8886 33 1 4.3019 5.2845 -0.8914 34 1 1.9805 6.1574 -0.8939 35 1 1.9790 6.1582 0.8860 36 1 1.3640 8.8561 -0.8963 37 1 1.3612 8.8568 0.8837 38 1 -0.3664 11.9837 -0.0111 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = -81.471977 kcal Electronic energy + Delta-G solvation = -18687.639548 eV Core-core repulsion = 15621.066474 eV Total energy + Delta-G solvation = -3066.573074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.52650 -39.66371 -37.91062 -35.31948 -33.26287 -32.50084 -31.20851 -30.72248 -29.87357 -25.88155 -25.14141 -24.06443 -23.27707 -22.08837 -19.79031 -18.65707 -18.41684 -17.47277 -17.33391 -17.05322 -16.86211 -16.32914 -15.75888 -15.71635 -15.09117 -15.08044 -14.56965 -14.34163 -14.33041 -13.93328 -13.76434 -13.39241 -13.13654 -12.86164 -12.81779 -12.70852 -12.57085 -12.22730 -12.07125 -11.86310 -11.85719 -11.64364 -11.60836 -10.83630 -10.75810 -9.73845 -8.83432 -8.57352 -8.35050 -6.49344 0.29749 0.45254 0.65579 1.40513 1.44012 1.52593 1.87937 2.26512 2.34061 2.39426 2.75709 2.99817 3.63818 3.73372 3.86209 4.01208 4.05613 4.06517 4.19583 4.23162 4.33398 4.42170 4.48827 4.51879 4.61203 4.73048 4.86503 4.89059 4.90731 4.92394 5.17259 5.25652 5.34693 5.53361 5.54640 5.76456 5.83961 6.09498 6.58090 6.61690 7.19170 8.77121 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.002809 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.322832 B = 9966.945291 C =10973.915184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.336 6.336 4 C 0.078 3.922 5 C -0.173 4.173 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.180 4.180 9 C 0.068 3.932 10 O -0.326 6.326 11 C 0.092 3.908 12 C -0.085 4.085 13 S -0.280 6.280 14 C 0.093 3.907 15 C -0.539 4.539 16 H 0.066 0.934 17 C 0.014 3.986 18 N -0.927 5.927 19 Si 0.980 3.020 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.265 1.265 23 H 0.056 0.944 24 H 0.105 0.895 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.142 0.858 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -25.673 0.019 26.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.252 6.252 4 C 0.032 3.968 5 C -0.192 4.192 6 C -0.133 4.133 7 C -0.137 4.137 8 C -0.199 4.199 9 C 0.023 3.977 10 O -0.241 6.241 11 C 0.016 3.984 12 C -0.233 4.233 13 S -0.054 6.054 14 C -0.055 4.055 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.187 4.187 18 N -0.565 5.565 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.189 1.189 23 H 0.075 0.925 24 H 0.124 0.876 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.176 0.824 29 H 0.177 0.823 30 H 0.171 0.829 31 H 0.159 0.841 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.651 -25.221 0.019 26.663 hybrid contribution -1.407 0.738 -0.003 1.589 sum 7.244 -24.483 0.016 25.532 Atomic orbital electron populations 1.21813 0.92170 1.04144 1.02719 1.23069 0.96562 0.80801 1.02458 1.86174 1.18554 1.31268 1.89160 1.18592 0.83636 0.91641 1.02921 1.21398 0.94386 0.97575 1.05834 1.21295 0.94231 0.98204 0.99554 1.21259 1.00898 0.91586 0.99949 1.21385 0.90659 1.01858 1.05996 1.18723 0.90079 0.85270 1.03634 1.86095 1.35394 1.13231 1.89404 1.22292 0.94085 0.78967 1.03056 1.23063 1.01079 0.93608 1.05541 1.86173 1.20718 1.00417 1.98085 1.20792 0.91308 0.95155 0.98203 1.20957 0.93829 0.89703 1.53274 0.91542 1.25958 0.94724 1.04371 0.93643 1.70062 1.02235 1.34365 1.49842 0.85279 0.78012 0.77028 0.79446 1.18936 1.20153 1.18946 0.92527 0.87615 0.92520 0.90688 0.90684 0.82391 0.82281 0.82888 0.84078 0.90355 0.90345 0.90035 0.90040 0.96573 0.96573 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 0.75 5.46 71.98 0.39 1.14 16 3 O -0.34 -9.08 9.92 -79.63 -0.79 -9.87 16 4 C 0.08 2.01 6.70 22.57 0.15 2.16 16 5 C -0.17 -3.14 9.04 22.35 0.20 -2.94 16 6 C -0.11 -1.76 10.04 22.28 0.22 -1.53 16 7 C -0.12 -2.07 10.04 22.27 0.22 -1.85 16 8 C -0.18 -4.17 9.04 22.35 0.20 -3.97 16 9 C 0.07 1.96 6.70 22.57 0.15 2.11 16 10 O -0.33 -10.82 9.92 -79.68 -0.79 -11.61 16 11 C 0.09 2.83 4.75 71.98 0.34 3.17 16 12 C -0.08 -3.09 6.31 71.98 0.45 -2.64 16 13 S -0.28 -12.33 21.66 -56.49 -1.22 -13.55 16 14 C 0.09 5.05 5.70 71.24 0.41 5.46 16 15 C -0.54 -31.04 9.13 25.60 0.23 -30.81 16 16 H 0.07 3.76 7.71 -2.91 -0.02 3.73 16 17 C 0.01 0.79 5.46 84.65 0.46 1.25 16 18 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 19 Si 0.98 43.73 29.54 68.60 2.03 45.76 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.96 7.67 -2.39 -0.02 0.95 16 27 H 0.07 0.96 7.66 -2.39 -0.02 0.95 16 28 H 0.16 1.89 6.30 -2.91 -0.02 1.87 16 29 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.14 3.00 6.30 -2.91 -0.02 2.98 16 32 H 0.08 2.23 7.66 -2.39 -0.02 2.21 16 33 H 0.08 2.23 7.66 -2.39 -0.02 2.21 16 34 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -68.61 336.67 4.73 -63.88 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.03 Total: 10.18 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 4.18 Total: -29.89 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.28 Total: -54.89 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.58 Total: -21.48 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -12.33 SS G_CDS: -1.22 Total: -13.55 kcal Total: -68.61 4.73 -63.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.588 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds