Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33390 * 125.20296 * 2 1 4 4 C 1.38425 * 114.92123 * 179.97438 * 3 2 1 5 5 C 1.33383 * 114.92174 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.20368 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47328 * 89.99412 * 6 5 4 8 8 C 1.34782 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99989 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99618 * 180.02562 * 8 7 6 11 11 H 1.08992 * 109.47148 * 320.00092 * 10 8 7 12 12 N 1.46904 * 109.46470 * 200.00185 * 10 8 7 13 13 C 1.52998 * 109.47103 * 80.00353 * 10 8 7 14 14 C 1.52998 * 109.47128 * 184.99649 * 13 10 8 15 15 C 1.50696 * 109.46998 * 179.97438 * 14 13 10 16 16 H 1.07995 * 120.00495 * 0.02562 * 15 14 13 17 17 C 1.37887 * 119.99825 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00004 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99893 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47114 * 90.00353 * 19 17 15 21 21 H 1.48493 * 109.47104 * 210.00217 * 19 17 15 22 22 H 1.48499 * 109.47034 * 330.00271 * 19 17 15 23 23 S 1.75887 * 109.59638 * 359.97438 * 5 4 3 24 24 H 1.09007 * 109.47039 * 90.00840 * 1 2 3 25 25 H 1.08998 * 109.47062 * 210.00206 * 1 2 3 26 26 H 1.08994 * 109.47215 * 330.00270 * 1 2 3 27 27 H 1.07997 * 122.53530 * 0.23800 * 3 2 1 28 28 H 1.08001 * 122.53506 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47162 * 209.99957 * 6 5 4 30 30 H 1.09004 * 109.46782 * 329.99301 * 6 5 4 31 31 H 0.97004 * 119.99962 * 0.02562 * 7 6 5 32 32 H 1.00901 * 110.99320 * 176.04966 * 12 10 8 33 33 H 1.00898 * 111.00172 * 299.99884 * 12 10 8 34 34 H 1.09003 * 109.47180 * 304.99865 * 13 10 8 35 35 H 1.09001 * 109.46867 * 64.99499 * 13 10 8 36 36 H 1.09002 * 109.46745 * 300.00123 * 14 13 10 37 37 H 1.08997 * 109.46921 * 60.00062 * 14 13 10 38 38 H 0.96995 * 119.99830 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4476 0.0016 6 6 5.3861 -0.9770 0.0018 7 7 5.8436 -1.1473 1.3830 8 6 7.0842 -1.6130 1.6294 9 8 7.8219 -1.8906 0.7076 10 6 7.5545 -1.7887 3.0503 11 1 7.2054 -0.9516 3.6547 12 7 9.0226 -1.8339 3.0780 13 6 6.9933 -3.0950 3.6155 14 6 7.3667 -3.2129 5.0945 15 6 6.8134 -4.4992 5.6513 16 1 6.2519 -5.1662 5.0140 17 6 7.0249 -4.8252 6.9743 18 7 7.7091 -4.0133 7.7503 19 14 6.3383 -6.4194 7.6647 20 1 7.3389 -7.5036 7.4956 21 1 6.0371 -6.2446 9.1082 22 1 5.0932 -6.7774 6.9390 23 16 2.5210 -1.4372 0.0026 24 1 -0.3633 -0.0002 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.8668 2.0894 0.0038 28 1 4.3720 1.6351 0.0002 29 1 5.4136 -1.9383 -0.5113 30 1 6.0387 -0.2717 -0.5129 31 1 5.2534 -0.9255 2.1202 32 1 9.3649 -1.8866 4.0257 33 1 9.3712 -2.6021 2.5244 34 1 5.9080 -3.0985 3.5134 35 1 7.4126 -3.9382 3.0665 36 1 8.4520 -3.2094 5.1965 37 1 6.9474 -2.3697 5.6434 38 1 7.8575 -4.2424 8.6810 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -26.333317 kcal Electronic energy + Delta-G solvation = -19026.235170 eV Core-core repulsion = 15994.345839 eV Total energy + Delta-G solvation = -3031.889331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.66751 -38.27359 -35.62468 -34.85892 -32.84670 -32.18370 -29.88657 -28.90856 -26.43848 -24.77113 -23.55041 -22.75132 -20.72467 -19.87854 -19.11818 -17.57583 -16.96662 -16.23613 -16.06296 -15.29993 -14.94181 -14.57013 -14.44594 -14.26241 -13.91867 -13.57353 -13.44260 -13.06119 -12.86733 -12.80856 -12.30592 -12.19598 -12.04186 -11.78913 -11.62170 -11.08992 -10.93091 -10.91150 -10.68305 -9.98699 -9.95068 -9.33917 -9.23188 -9.02749 -8.76268 -8.68608 -8.43786 -8.17660 -6.08380 -4.11404 0.65029 1.33762 1.75307 2.42006 2.92859 3.27387 3.34012 3.37033 3.43081 4.39668 4.42794 4.57018 4.93936 4.99834 5.12446 5.17454 5.20418 5.27820 5.28699 5.44016 5.55328 5.59180 5.61073 5.77128 5.91229 5.99129 6.25485 6.29387 6.44832 6.52841 6.87904 7.43261 7.52038 7.61598 7.69857 7.88699 7.91583 8.31404 8.44626 8.94558 9.53445 11.02548 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.003604 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.338704 B = 7766.675370 C = 9009.964133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.176 4.176 3 C -0.146 4.146 4 C -0.112 4.112 5 C -0.204 4.204 6 C 0.195 3.805 7 N -0.732 5.732 8 C 0.527 3.473 9 O -0.538 6.538 10 C 0.075 3.925 11 H 0.097 0.903 12 N -0.831 5.831 13 C -0.137 4.137 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 S 0.119 5.881 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.404 0.596 32 H 0.354 0.646 33 H 0.345 0.655 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.402 10.208 -15.316 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.294 4.294 3 C -0.176 4.176 4 C -0.143 4.143 5 C -0.321 4.321 6 C 0.070 3.930 7 N -0.386 5.386 8 C 0.314 3.686 9 O -0.414 6.414 10 C -0.040 4.040 11 H 0.115 0.885 12 N -0.363 5.363 13 C -0.177 4.177 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 S 0.384 5.616 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.238 0.762 32 H 0.170 0.830 33 H 0.159 0.841 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.094 9.182 -16.154 22.170 hybrid contribution -0.572 -0.163 1.304 1.433 sum -12.666 9.019 -14.849 21.500 Atomic orbital electron populations 1.20360 0.87778 1.03361 1.02770 1.24623 1.00147 0.96058 1.08585 1.20072 0.92802 0.99321 1.05384 1.20161 0.96352 0.95861 1.01958 1.24455 0.98427 0.96787 1.12478 1.19552 0.87693 1.01125 0.84623 1.46112 1.16141 1.68480 1.07844 1.20935 0.80467 0.75222 0.92022 1.90637 1.54451 1.49797 1.46523 1.21469 0.90684 1.00475 0.91351 0.88532 1.58746 1.05928 1.53000 1.18598 1.22383 1.00419 0.94233 1.00685 1.19101 0.96866 0.97377 0.87935 1.21184 1.34503 1.05246 0.95263 0.92715 1.25015 0.95189 0.96982 0.97130 1.69948 1.40183 1.36577 1.06498 0.86583 0.79435 0.83734 0.78216 1.20615 1.21142 1.19873 1.84488 0.95960 1.08761 1.72400 0.90685 0.91145 0.90434 0.84303 0.84085 0.90679 0.89753 0.76190 0.83026 0.84135 0.92529 0.92665 0.96388 0.96312 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.38 36.01 0.37 -0.16 16 2 C -0.18 -1.56 6.51 -36.00 -0.23 -1.80 16 3 C -0.15 -1.27 10.05 -41.21 -0.41 -1.69 16 4 C -0.11 -1.05 10.05 -41.21 -0.41 -1.47 16 5 C -0.20 -2.14 5.88 -36.00 -0.21 -2.35 16 6 C 0.20 2.32 6.16 -5.20 -0.03 2.29 16 7 N -0.73 -9.77 5.55 -61.47 -0.34 -10.11 16 8 C 0.53 8.80 7.08 -10.98 -0.08 8.72 16 9 O -0.54 -10.56 16.25 5.56 0.09 -10.47 16 10 C 0.08 1.30 3.21 -68.86 -0.22 1.07 16 11 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 12 N -0.83 -14.47 8.94 -5.65 -0.05 -14.52 16 13 C -0.14 -2.72 4.78 -26.73 -0.13 -2.85 16 14 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 23 S 0.12 1.21 23.31 -107.50 -2.51 -1.30 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.40 4.84 8.46 -40.82 -0.35 4.49 16 32 H 0.35 6.17 7.55 -39.29 -0.30 5.87 16 33 H 0.35 6.09 8.58 -39.29 -0.34 5.75 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -31.43 338.50 -9.42 -40.85 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.53 Total: 10.44 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.90 Total: -10.96 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.34 Total: -49.97 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.43 -9.42 -40.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.516 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds