Wall clock time and date at job start Tue Mar 31 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47216 * 89.99951 * 6 5 4 8 8 C 1.34774 * 119.99685 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00407 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99872 * 179.97438 * 8 7 6 11 11 H 1.08998 * 109.47039 * 40.00242 * 10 8 7 12 12 N 1.46900 * 109.47408 * 159.99770 * 10 8 7 13 13 C 1.52998 * 109.47347 * 280.00062 * 10 8 7 14 14 C 1.52995 * 109.47144 * 174.99947 * 13 10 8 15 15 C 1.50701 * 109.47213 * 180.02562 * 14 13 10 16 16 H 1.08007 * 119.99871 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00558 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00295 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99405 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47375 * 90.00209 * 19 17 15 21 21 H 1.48504 * 109.46828 * 210.00223 * 19 17 15 22 22 H 1.48504 * 109.47471 * 329.99636 * 19 17 15 23 23 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 24 24 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 27 27 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 28 28 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 29 29 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 30 30 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 31 31 H 0.96999 * 120.00291 * 359.97438 * 7 6 5 32 32 H 1.00910 * 110.99930 * 59.99833 * 12 10 8 33 33 H 1.00898 * 111.00510 * 183.95190 * 12 10 8 34 34 H 1.09000 * 109.46790 * 295.00007 * 13 10 8 35 35 H 1.09000 * 109.47108 * 54.99927 * 13 10 8 36 36 H 1.09000 * 109.47326 * 299.99732 * 14 13 10 37 37 H 1.09003 * 109.47625 * 60.00075 * 14 13 10 38 38 H 0.96995 * 119.99500 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 7 5.8433 -1.1486 1.3817 8 6 7.0841 -1.6135 1.6278 9 8 7.8220 -1.8903 0.7060 10 6 7.5547 -1.7895 3.0486 11 1 6.7414 -2.1901 3.6537 12 7 8.6903 -2.7210 3.0766 13 6 7.9914 -0.4360 3.6127 14 6 8.3509 -0.5918 5.0916 15 6 8.7803 0.7415 5.6474 16 1 8.7957 1.6129 5.0093 17 6 9.1536 0.8492 6.9703 18 7 9.5289 2.0127 7.4551 19 14 9.1276 -0.6580 8.0736 20 1 10.4467 -1.3374 8.0147 21 1 8.8464 -0.2433 9.4715 22 1 8.0689 -1.5914 7.6118 23 16 2.5210 -1.4371 0.0077 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.8669 2.0895 -0.0007 28 1 4.3721 1.6351 0.0002 29 1 5.4136 -1.9379 -0.5135 30 1 6.0389 -0.2713 -0.5134 31 1 5.2533 -0.9269 2.1190 32 1 9.4580 -2.3720 2.5223 33 1 8.9833 -2.9058 4.0242 34 1 8.8615 -0.0770 3.0631 35 1 7.1761 0.2803 3.5104 36 1 7.4807 -0.9508 5.6412 37 1 9.1661 -1.3081 5.1939 38 1 9.7911 2.0884 8.3859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:43 Heat of formation + Delta-G solvation = -22.494116 kcal Electronic energy + Delta-G solvation = -19063.866342 eV Core-core repulsion = 16032.143491 eV Total energy + Delta-G solvation = -3031.722851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.74538 -38.29943 -35.77357 -34.92193 -32.80995 -32.21960 -30.32293 -28.98415 -26.73117 -24.82291 -23.49219 -22.72581 -20.58118 -19.97560 -19.12862 -17.67087 -17.04698 -16.63758 -16.12343 -15.38295 -14.95462 -14.65743 -14.35410 -14.23281 -14.04550 -13.65284 -13.49017 -13.20182 -12.88522 -12.75509 -12.66275 -12.34302 -12.14346 -11.89471 -11.73433 -11.34587 -10.98900 -10.97568 -10.37434 -10.11903 -9.87338 -9.51700 -9.31976 -9.08100 -8.79645 -8.71508 -8.62546 -8.31764 -6.12168 -4.11704 0.62450 1.30389 1.71266 2.41146 2.85301 3.24917 3.33111 3.34484 3.36382 4.37340 4.40163 4.55175 4.90835 4.93150 5.04441 5.08519 5.14745 5.20916 5.28225 5.42797 5.46641 5.52514 5.58381 5.60670 5.90179 5.98261 6.13500 6.24245 6.32333 6.39461 6.65404 7.08394 7.21580 7.31976 7.60257 7.66500 7.77585 8.37189 8.44254 8.91826 9.49124 11.01084 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.003446 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.428498 B = 8124.442577 C = 8888.501762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.175 4.175 3 C -0.144 4.144 4 C -0.108 4.108 5 C -0.204 4.204 6 C 0.196 3.804 7 N -0.731 5.731 8 C 0.527 3.473 9 O -0.536 6.536 10 C 0.072 3.928 11 H 0.097 0.903 12 N -0.831 5.831 13 C -0.129 4.129 14 C -0.010 4.010 15 C -0.524 4.524 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 S 0.111 5.889 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.404 0.596 32 H 0.348 0.652 33 H 0.350 0.650 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.018 0.982 37 H 0.011 0.989 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 -5.521 -14.897 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.293 4.293 3 C -0.174 4.174 4 C -0.140 4.140 5 C -0.322 4.322 6 C 0.070 3.930 7 N -0.385 5.385 8 C 0.314 3.686 9 O -0.412 6.412 10 C -0.043 4.043 11 H 0.115 0.885 12 N -0.363 5.363 13 C -0.169 4.169 14 C -0.048 4.048 15 C -0.562 4.562 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 S 0.375 5.625 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.238 0.762 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.582 -7.736 -15.749 24.840 hybrid contribution 0.524 1.905 1.519 2.492 sum -17.058 -5.832 -14.230 22.967 Atomic orbital electron populations 1.20360 0.87765 1.03326 1.02785 1.24598 1.00093 0.95932 1.08700 1.20105 0.92816 0.99417 1.05018 1.20217 0.96439 0.95973 1.01376 1.24426 0.98289 0.96740 1.12719 1.19559 0.87771 1.01139 0.84487 1.46099 1.16081 1.68368 1.07954 1.20816 0.80652 0.75297 0.91842 1.90646 1.54502 1.49627 1.46425 1.21506 0.96213 0.94763 0.91807 0.88511 1.58731 1.11312 1.48021 1.18199 1.22199 1.01402 0.94102 0.99195 1.19573 0.96167 0.98058 0.90989 1.21070 1.44886 0.94256 0.95974 0.91072 1.25045 0.94492 0.95878 0.98038 1.69911 1.45155 1.23869 1.15015 0.86766 0.78961 0.83535 0.79938 1.20205 1.21324 1.18958 1.84341 0.96128 1.09055 1.72954 0.90671 0.90381 0.91230 0.84186 0.83906 0.90616 0.89693 0.76182 0.83824 0.83473 0.92033 0.91868 0.96341 0.97035 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.38 36.01 0.37 -0.12 16 2 C -0.18 -1.50 6.51 -36.00 -0.23 -1.74 16 3 C -0.14 -1.27 10.05 -41.21 -0.41 -1.68 16 4 C -0.11 -1.05 10.05 -41.21 -0.41 -1.47 16 5 C -0.20 -2.09 5.88 -36.00 -0.21 -2.30 16 6 C 0.20 2.25 6.16 -5.20 -0.03 2.22 16 7 N -0.73 -9.35 5.55 -61.47 -0.34 -9.69 16 8 C 0.53 8.43 7.08 -10.99 -0.08 8.35 16 9 O -0.54 -10.17 16.25 5.56 0.09 -10.08 16 10 C 0.07 1.16 3.21 -68.86 -0.22 0.94 16 11 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 12 N -0.83 -13.44 8.94 -5.65 -0.05 -13.49 16 13 C -0.13 -2.42 4.78 -26.73 -0.13 -2.55 16 14 C -0.01 -0.23 3.81 -27.89 -0.11 -0.34 16 15 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 16 H 0.07 2.14 7.99 -52.48 -0.42 1.73 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 19 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 23 S 0.11 1.03 23.31 -107.50 -2.51 -1.47 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.40 4.59 8.46 -40.82 -0.35 4.24 16 32 H 0.35 5.74 8.58 -39.29 -0.34 5.40 16 33 H 0.35 5.46 7.55 -39.29 -0.30 5.16 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 37 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -32.26 334.90 -9.05 -41.30 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.49 Total: 10.32 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -1.90 Total: -11.73 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.38 Total: -49.81 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.26 -9.05 -41.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.810 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds