Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48503 * 109.47157 * 239.99820 * 3 2 1 5 5 H 1.48505 * 109.47080 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47082 * 119.99770 * 3 2 1 7 7 C 1.37882 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00373 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99658 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46835 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99625 * 180.02562 * 10 9 7 12 12 O 1.21579 * 120.00539 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99336 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99852 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47316 * 34.99388 * 14 13 11 16 16 C 1.53004 * 109.47030 * 275.00059 * 14 13 11 17 17 O 1.42899 * 109.47092 * 295.00016 * 16 14 13 18 18 C 1.50696 * 109.47363 * 155.00127 * 14 13 11 19 19 C 1.38248 * 119.97128 * 219.99706 * 18 14 13 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 14 21 21 C 1.38458 * 119.97492 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38197 * 119.97511 * 359.47283 * 23 21 20 25 25 H 0.96995 * 119.99548 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47475 * 60.00430 * 9 7 2 27 27 H 1.08998 * 109.47305 * 299.99648 * 9 7 2 28 28 H 0.96998 * 119.99920 * 359.97438 * 10 9 7 29 29 H 0.97002 * 120.00980 * 0.02562 * 13 11 10 30 30 H 1.08998 * 109.47125 * 54.99253 * 16 14 13 31 31 H 1.08999 * 109.47143 * 174.99948 * 16 14 13 32 32 H 0.96699 * 114.00087 * 179.97438 * 17 16 14 33 33 H 1.08001 * 119.98881 * 0.02562 * 19 18 14 34 34 H 1.07995 * 120.01604 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.01064 * 179.75151 * 23 21 20 36 36 H 1.07994 * 119.98821 * 180.29814 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5583 -5.1056 0.0000 13 7 2.6295 -5.9078 -0.0005 14 6 2.1411 -7.2890 -0.0016 15 1 1.2264 -7.3506 -0.5913 16 6 1.8522 -7.7290 1.4350 17 8 3.0723 -7.7600 2.1782 18 6 3.1878 -8.1915 -0.6024 19 6 2.8113 -9.2193 -1.4469 20 6 3.7703 -10.0472 -1.9988 21 6 5.1086 -9.8473 -1.7055 22 9 6.0470 -10.6563 -2.2441 23 6 5.4840 -8.8210 -0.8551 24 6 4.5237 -7.9908 -0.3089 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 3.1566 -3.4355 0.0002 29 1 3.5832 -5.7306 -0.0001 30 1 1.1621 -7.0243 1.8990 31 1 1.4059 -8.7234 1.4277 32 1 2.9645 -8.0308 3.1002 33 1 1.7674 -9.3748 -1.6759 34 1 3.4761 -10.8498 -2.6588 35 1 6.5274 -8.6667 -0.6224 36 1 4.8167 -7.1873 0.3506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426425425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -102.847305 kcal Electronic energy + Delta-G solvation = -21362.395916 eV Core-core repulsion = 17760.975513 eV Total energy + Delta-G solvation = -3601.420403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.06918 -40.08501 -38.76539 -36.87933 -34.58282 -33.97172 -32.36791 -31.42210 -30.82870 -28.21171 -26.81451 -23.69682 -23.36220 -22.52975 -20.92674 -20.02042 -18.42489 -17.80014 -17.36331 -16.73362 -16.26833 -15.78890 -15.71272 -15.35823 -14.88108 -14.76181 -14.29769 -14.05779 -13.84806 -13.59633 -13.52435 -13.06089 -12.85193 -12.51754 -12.09755 -11.94418 -11.72421 -11.33299 -11.17159 -10.96614 -10.86394 -10.29646 -10.08977 -9.44736 -9.37777 -9.28574 -8.87940 -8.73138 -8.66148 -7.76763 -6.14637 -4.21129 0.91504 1.05393 3.20850 3.26667 3.31558 3.33439 3.49336 3.89842 4.06468 4.24789 4.33855 4.46382 4.54298 4.68957 5.03901 5.08035 5.13817 5.21445 5.25773 5.35803 5.57532 5.64081 5.75285 5.84839 5.91912 6.05389 6.30708 6.67838 6.82863 7.11771 7.51103 7.54070 7.56598 7.57585 7.90872 8.04817 8.76825 8.93587 9.32257 9.48120 10.95591 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.025694 B = 0.003272 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.507680 B = 8555.055015 C = 9004.772830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.728 5.728 11 C 0.695 3.305 12 O -0.603 6.603 13 N -0.745 5.745 14 C 0.211 3.789 15 H 0.109 0.891 16 C 0.067 3.933 17 O -0.567 6.567 18 C -0.093 4.093 19 C -0.081 4.081 20 C -0.155 4.155 21 C 0.094 3.906 22 F -0.143 7.143 23 C -0.155 4.155 24 C -0.059 4.059 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.387 0.613 29 H 0.393 0.607 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.376 0.624 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.120 -19.915 0.340 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.379 5.379 11 C 0.394 3.606 12 O -0.483 6.483 13 N -0.403 5.403 14 C 0.104 3.896 15 H 0.127 0.873 16 C -0.012 4.012 17 O -0.372 6.372 18 C -0.093 4.093 19 C -0.100 4.100 20 C -0.174 4.174 21 C 0.074 3.926 22 F -0.122 7.122 23 C -0.174 4.174 24 C -0.077 4.077 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.219 0.781 29 H 0.228 0.772 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.223 0.777 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.078 -19.752 -0.264 21.341 hybrid contribution 1.231 0.715 0.455 1.495 sum 9.310 -19.036 0.191 21.192 Atomic orbital electron populations 1.69968 1.06088 1.27371 1.48916 1.24941 0.94914 0.99383 0.94759 0.86471 0.79400 0.82321 0.78673 1.20088 1.21093 1.20086 1.21198 0.93256 0.90468 1.53181 0.91990 1.18975 0.87749 0.81032 0.97579 1.45717 1.10842 1.04376 1.77015 1.16136 0.85145 0.81086 0.78184 1.90860 1.14177 1.84240 1.59022 1.45173 1.09059 1.04064 1.81963 1.19603 0.95988 0.79889 0.94097 0.87333 1.22652 0.86649 0.99662 0.92281 1.86446 1.31950 1.92041 1.26752 1.19934 0.94615 0.97030 0.97770 1.20893 0.99754 0.93962 0.95370 1.21070 0.91179 1.02077 1.03086 1.17758 0.86129 0.91580 0.97084 1.91491 1.64544 1.71668 1.84500 1.21149 1.01098 0.95997 0.99132 1.20828 0.91616 0.98253 0.97014 0.92416 0.95735 0.95752 0.78128 0.77242 0.92095 0.93110 0.77746 0.84748 0.84758 0.84772 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.15 5.43 -5.19 -0.03 7.12 16 10 N -0.73 -15.53 5.55 -66.41 -0.37 -15.90 16 11 C 0.69 14.05 8.53 -86.91 -0.74 13.31 16 12 O -0.60 -14.50 16.01 5.30 0.08 -14.42 16 13 N -0.75 -11.08 4.98 -59.81 -0.30 -11.37 16 14 C 0.21 2.68 2.61 -69.08 -0.18 2.50 16 15 H 0.11 1.49 7.44 -51.93 -0.39 1.10 16 16 C 0.07 0.77 6.84 37.16 0.25 1.02 16 17 O -0.57 -5.90 12.04 -35.23 -0.42 -6.33 16 18 C -0.09 -1.01 4.83 -104.62 -0.51 -1.52 16 19 C -0.08 -0.78 9.67 -39.59 -0.38 -1.17 16 20 C -0.16 -1.47 10.03 -39.52 -0.40 -1.87 16 21 C 0.09 0.98 7.30 -39.42 -0.29 0.70 16 22 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 23 C -0.15 -1.54 10.03 -39.51 -0.40 -1.94 16 24 C -0.06 -0.61 8.05 -39.59 -0.32 -0.93 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.12 8.34 -40.82 -0.34 6.78 16 29 H 0.39 5.01 6.88 -40.82 -0.28 4.73 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.38 2.47 9.12 45.56 0.42 2.89 16 33 H 0.13 1.04 8.04 -52.49 -0.42 0.62 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.14 1.34 6.67 -52.49 -0.35 0.99 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -33.37 319.09 -7.28 -40.65 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -3.43 Total: 9.85 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -3.40 Total: 3.81 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.07 Total: -52.67 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.34 Total: -20.75 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.37 -7.28 -40.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426425425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.201 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds