Wall clock time and date at job start Tue Mar 31 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.20514 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47178 * 89.99513 * 6 5 4 8 8 H 1.09004 * 109.47111 * 55.00623 * 7 6 5 9 9 C 1.53001 * 109.47344 * 175.00308 * 7 6 5 10 10 N 1.46499 * 109.47538 * 295.00360 * 7 6 5 11 11 C 1.34771 * 120.00224 * 154.99826 * 10 7 6 12 12 O 1.21589 * 120.00404 * 0.02562 * 11 10 7 13 13 N 1.34776 * 119.99858 * 179.97438 * 11 10 7 14 14 C 1.46506 * 119.99905 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.46936 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00748 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99942 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47190 * 90.00058 * 19 17 15 21 21 H 1.48506 * 109.47253 * 209.99593 * 19 17 15 22 22 H 1.48491 * 109.47152 * 329.99688 * 19 17 15 23 23 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 24 24 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 27 27 H 1.07996 * 122.54357 * 359.97438 * 3 2 1 28 28 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47231 * 209.99979 * 6 5 4 30 30 H 1.09000 * 109.47136 * 329.99696 * 6 5 4 31 31 H 1.08996 * 109.47701 * 180.02562 * 9 7 6 32 32 H 1.09002 * 109.47043 * 300.00108 * 9 7 6 33 33 H 1.09003 * 109.47227 * 59.99855 * 9 7 6 34 34 H 0.97004 * 119.99687 * 334.99668 * 10 7 6 35 35 H 0.97000 * 120.00518 * 359.97438 * 13 11 10 36 36 H 1.08997 * 109.46767 * 299.99840 * 14 13 11 37 37 H 1.08997 * 109.47311 * 60.00049 * 14 13 11 38 38 H 0.96999 * 119.99966 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3860 -0.9770 0.0016 7 6 5.8623 -1.1565 1.4444 8 1 5.1593 -1.7922 1.9827 9 6 7.2458 -1.8098 1.4473 10 7 5.9386 0.1515 2.0998 11 6 5.8355 0.2404 3.4406 12 8 5.6796 -0.7650 4.1065 13 7 5.9062 1.4437 4.0436 14 6 5.7946 1.5403 5.5012 15 6 5.9043 2.9841 5.9188 16 1 6.0435 3.7529 5.1731 17 6 5.8278 3.3236 7.2529 18 7 5.6587 2.3875 8.1610 19 14 5.9644 5.1133 7.7706 20 1 4.6123 5.7267 7.7928 21 1 6.5659 5.1920 9.1261 22 1 6.8236 5.8438 6.8046 23 16 2.5210 -1.4371 0.0077 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.8669 2.0895 -0.0004 28 1 4.3721 1.6351 0.0002 29 1 5.4141 -1.9378 -0.5125 30 1 6.0393 -0.2713 -0.5115 31 1 7.5850 -1.9381 2.4752 32 1 7.1891 -2.7830 0.9597 33 1 7.9489 -1.1742 0.9090 34 1 6.0633 0.9535 1.5687 35 1 6.0316 2.2457 3.5126 36 1 4.8308 1.1427 5.8189 37 1 6.5957 0.9655 5.9658 38 1 5.6046 2.6264 9.0996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426430762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:46 Heat of formation + Delta-G solvation = -18.455819 kcal Electronic energy + Delta-G solvation = -19510.125073 eV Core-core repulsion = 16478.577335 eV Total energy + Delta-G solvation = -3031.547738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.41339 -38.09244 -35.97824 -33.99335 -32.58915 -32.19302 -30.68092 -28.48735 -26.90653 -24.81886 -23.06033 -22.61697 -21.05591 -20.10350 -18.94889 -17.93131 -16.98652 -16.02245 -15.81955 -15.38194 -14.77092 -14.54722 -14.11446 -13.80897 -13.75908 -13.45746 -13.09705 -12.96975 -12.89476 -12.34960 -12.18826 -11.92064 -11.81264 -11.78814 -11.55754 -11.32468 -10.95571 -10.88977 -10.84292 -10.73099 -10.26362 -9.32917 -9.30621 -8.72666 -8.64778 -8.44541 -8.42222 -7.68804 -6.11684 -4.17927 0.96541 1.57505 1.96372 2.73760 3.26811 3.31999 3.34583 3.46636 4.04941 4.35890 4.61813 4.77863 4.88562 5.04401 5.13429 5.24098 5.24420 5.30660 5.35070 5.49739 5.55156 5.63144 5.65216 5.76866 5.81089 6.11159 6.17364 6.25621 6.36315 6.51312 6.99624 7.19587 7.58344 7.61536 7.62970 7.97134 8.10402 8.81780 9.02523 9.40424 9.55132 10.98640 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.004060 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.361233 B = 6894.417848 C = 7891.942092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.184 4.184 3 C -0.136 4.136 4 C -0.130 4.130 5 C -0.169 4.169 6 C -0.056 4.056 7 C 0.167 3.833 8 H 0.087 0.913 9 C -0.163 4.163 10 N -0.748 5.748 11 C 0.695 3.305 12 O -0.602 6.602 13 N -0.730 5.730 14 C 0.268 3.732 15 C -0.540 4.540 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 S 0.092 5.908 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.388 0.612 35 H 0.385 0.615 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 -4.897 -21.080 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.301 4.301 3 C -0.166 4.166 4 C -0.160 4.160 5 C -0.286 4.286 6 C -0.096 4.096 7 C 0.060 3.940 8 H 0.105 0.895 9 C -0.222 4.222 10 N -0.405 5.405 11 C 0.395 3.605 12 O -0.481 6.481 13 N -0.382 5.382 14 C 0.147 3.853 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 S 0.356 5.644 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.217 0.783 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.140 -7.410 -20.182 22.105 hybrid contribution 0.452 3.297 -0.036 3.328 sum -4.687 -4.113 -20.218 21.158 Atomic orbital electron populations 1.20317 0.88050 1.03232 1.02394 1.24418 0.99833 0.95704 1.10176 1.20055 0.93022 0.99165 1.04356 1.19993 0.96148 0.95774 1.04038 1.24312 0.98242 0.96479 1.09590 1.20512 0.89800 1.02127 0.97153 1.20646 0.97247 0.85205 0.90853 0.89500 1.22213 0.96787 1.00033 1.03161 1.45171 1.80825 1.08624 1.05911 1.16130 0.78248 0.84916 0.81241 1.90860 1.57982 1.35530 1.63725 1.45692 1.76286 1.05536 1.10717 1.18945 0.97361 0.96722 0.72305 1.21231 1.51932 0.92039 0.92673 0.92021 1.24941 0.94841 0.97940 0.96292 1.69984 1.48420 1.32577 1.01355 0.86428 0.78279 0.84257 0.78002 1.20510 1.21027 1.19799 1.84157 0.96782 1.09725 1.73747 0.90995 0.90546 0.91403 0.84570 0.84653 0.89464 0.89534 0.91420 0.92105 0.92641 0.77892 0.78331 0.95877 0.95838 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.38 36.01 0.37 -0.34 16 2 C -0.18 -2.11 6.51 -36.00 -0.23 -2.34 16 3 C -0.14 -1.58 10.05 -41.21 -0.41 -1.99 16 4 C -0.13 -1.50 9.85 -41.21 -0.41 -1.90 16 5 C -0.17 -1.95 5.52 -36.01 -0.20 -2.15 16 6 C -0.06 -0.55 5.25 -27.89 -0.15 -0.70 16 7 C 0.17 2.20 2.56 -67.93 -0.17 2.03 16 8 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 9 C -0.16 -1.95 9.48 37.16 0.35 -1.60 16 10 N -0.75 -11.32 4.66 -58.68 -0.27 -11.59 16 11 C 0.69 14.67 8.53 -86.92 -0.74 13.93 16 12 O -0.60 -15.38 16.01 5.29 0.08 -15.30 16 13 N -0.73 -16.05 5.55 -66.42 -0.37 -16.41 16 14 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 15 C -0.54 -14.96 9.28 -34.44 -0.32 -15.27 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 S 0.09 1.07 23.31 -107.50 -2.51 -1.44 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.39 4.76 8.57 -40.82 -0.35 4.41 16 35 H 0.38 7.25 8.34 -40.82 -0.34 6.91 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 339.91 15.07 5.12 5.12 Total: -1.00 -33.78 339.91 -9.95 -43.73 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.69 Total: 6.95 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.03 Total: -1.34 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.09 Total: -53.82 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.78 -9.95 -43.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.272 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds