Wall clock time and date at job start Tue Mar 31 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33381 * 125.20263 * 2 1 4 4 C 1.38433 * 114.92067 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.91657 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.20285 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47123 * 90.00319 * 6 5 4 8 8 H 1.09007 * 109.47200 * 305.00289 * 7 6 5 9 9 C 1.52995 * 109.47524 * 185.00298 * 7 6 5 10 10 N 1.46499 * 109.47155 * 65.00154 * 7 6 5 11 11 C 1.34784 * 119.99971 * 205.00183 * 10 7 6 12 12 O 1.21583 * 119.99855 * 359.72712 * 11 10 7 13 13 N 1.34771 * 119.99547 * 179.97438 * 11 10 7 14 14 C 1.46506 * 119.99515 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46931 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00200 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99569 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00138 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47675 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47348 * 119.99771 * 19 17 15 22 22 H 1.48505 * 109.46905 * 239.99775 * 19 17 15 23 23 S 1.75882 * 109.59874 * 0.24258 * 5 4 3 24 24 H 1.08997 * 109.46955 * 90.00159 * 1 2 3 25 25 H 1.08994 * 109.47357 * 210.00253 * 1 2 3 26 26 H 1.09004 * 109.46961 * 330.00165 * 1 2 3 27 27 H 1.08002 * 122.54588 * 0.05859 * 3 2 1 28 28 H 1.07999 * 122.54227 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47215 * 330.00538 * 6 5 4 30 30 H 1.08995 * 109.47699 * 210.00659 * 6 5 4 31 31 H 1.08996 * 109.47227 * 299.99947 * 9 7 6 32 32 H 1.09005 * 109.47314 * 59.99924 * 9 7 6 33 33 H 1.09001 * 109.47831 * 179.97438 * 9 7 6 34 34 H 0.96999 * 119.99984 * 25.00030 * 10 7 6 35 35 H 0.96999 * 120.00409 * 0.02562 * 13 11 10 36 36 H 1.08996 * 109.47564 * 300.00635 * 14 13 11 37 37 H 1.09000 * 109.46872 * 60.00432 * 14 13 11 38 38 H 0.97002 * 119.99797 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6381 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3860 -0.9772 -0.0016 7 6 5.8647 -1.1560 1.4406 8 1 5.7540 -0.2150 1.9795 9 6 7.3365 -1.5740 1.4413 10 7 5.0627 -2.1917 2.0965 11 6 4.9283 -2.1916 3.4376 12 8 5.4767 -1.3348 4.1034 13 7 4.1900 -3.1441 4.0409 14 6 4.0444 -3.1442 5.4987 15 6 3.1778 -4.3041 5.9168 16 1 2.7760 -4.9743 5.1712 17 6 2.8977 -4.5096 7.2511 18 7 3.3873 -3.6937 8.1590 19 14 1.8242 -5.9477 7.7694 20 1 1.4029 -6.7098 6.5666 21 1 2.5930 -6.8380 8.6758 22 1 0.6226 -5.4382 8.4780 23 16 2.5210 -1.4372 -0.0067 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.8670 2.0895 0.0009 28 1 4.3722 1.6349 -0.0002 29 1 6.0384 -0.2717 -0.5161 30 1 5.4132 -1.9382 -0.5152 31 1 7.4473 -2.5149 0.9025 32 1 7.9333 -0.8033 0.9533 33 1 7.6777 -1.7009 2.4687 34 1 4.6283 -2.8776 1.5656 35 1 3.7557 -3.8300 3.5100 36 1 5.0264 -3.2393 5.9620 37 1 3.5810 -2.2106 5.8176 38 1 3.1906 -3.8385 9.0978 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426430763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:47 Heat of formation + Delta-G solvation = -18.176196 kcal Electronic energy + Delta-G solvation = -19544.719530 eV Core-core repulsion = 16513.183918 eV Total energy + Delta-G solvation = -3031.535612 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.37953 -38.10796 -35.99827 -33.98877 -32.61685 -32.18886 -30.60853 -28.49619 -26.90217 -24.82140 -23.00461 -22.65717 -21.08182 -20.10794 -18.77737 -18.11950 -16.88150 -16.08576 -15.80987 -15.34684 -14.77800 -14.53592 -14.09566 -13.79008 -13.74881 -13.43759 -13.13159 -12.96724 -12.87978 -12.32981 -12.16072 -11.91970 -11.88045 -11.77913 -11.50643 -11.34938 -10.92581 -10.88561 -10.83297 -10.70554 -10.26090 -9.31312 -9.30010 -8.74846 -8.65958 -8.44481 -8.37278 -7.68228 -6.11397 -4.17338 0.97324 1.59350 1.98344 2.72306 3.26419 3.32596 3.35772 3.46956 4.04995 4.36371 4.63187 4.80092 4.88399 5.00180 5.16462 5.21364 5.24785 5.37050 5.39194 5.49717 5.55088 5.62508 5.65051 5.78565 5.81939 6.08398 6.19862 6.24753 6.37300 6.51375 6.98763 7.19623 7.59237 7.61987 7.63421 7.97108 8.10492 8.82557 9.02610 9.40769 9.55446 10.99009 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016130 B = 0.004408 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.496430 B = 6351.072092 C = 7514.563838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.183 4.183 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.170 4.170 6 C -0.056 4.056 7 C 0.167 3.833 8 H 0.089 0.911 9 C -0.163 4.163 10 N -0.751 5.751 11 C 0.696 3.304 12 O -0.601 6.601 13 N -0.730 5.730 14 C 0.268 3.732 15 C -0.539 4.539 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 S 0.102 5.898 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.387 0.613 35 H 0.385 0.615 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 5.935 -21.081 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.300 4.300 3 C -0.170 4.170 4 C -0.167 4.167 5 C -0.287 4.287 6 C -0.096 4.096 7 C 0.060 3.940 8 H 0.107 0.893 9 C -0.222 4.222 10 N -0.408 5.408 11 C 0.396 3.604 12 O -0.481 6.481 13 N -0.382 5.382 14 C 0.146 3.854 15 C -0.577 4.577 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.524 5.524 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 S 0.367 5.633 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.220 0.780 35 H 0.217 0.783 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.430 5.213 -20.205 20.871 hybrid contribution -0.724 0.163 -0.016 0.742 sum -1.154 5.376 -20.221 20.955 Atomic orbital electron populations 1.20326 0.88017 1.03355 1.02393 1.24445 0.99908 0.95785 1.09870 1.20018 0.92975 0.99074 1.04936 1.20018 0.96196 0.95879 1.04644 1.24329 0.98433 0.96530 1.09416 1.20526 0.90051 1.01847 0.97158 1.20676 0.89857 0.92601 0.90859 0.89282 1.22208 0.95674 1.01121 1.03156 1.45234 1.56698 1.32817 1.06004 1.16115 0.80290 0.82867 0.81172 1.90856 1.53271 1.40247 1.63696 1.45696 1.52482 1.29306 1.10702 1.18953 0.96937 0.97196 0.72279 1.21273 1.31799 1.12008 0.92669 0.91947 1.24943 0.96069 0.96732 0.96306 1.69996 1.44126 1.36937 1.01299 0.86374 0.80036 0.81918 0.78638 1.19681 1.20837 1.20850 1.84167 0.96491 1.09627 1.73056 0.90994 0.91197 0.90615 0.84687 0.84550 0.88611 0.90409 0.92712 0.92053 0.91415 0.78035 0.78289 0.95830 0.95859 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.38 36.01 0.37 -0.38 16 2 C -0.18 -2.13 6.51 -36.00 -0.23 -2.37 16 3 C -0.14 -1.61 10.05 -41.21 -0.41 -2.02 16 4 C -0.14 -1.59 10.05 -41.21 -0.41 -2.00 16 5 C -0.17 -1.97 5.49 -36.00 -0.20 -2.17 16 6 C -0.06 -0.55 5.25 -27.88 -0.15 -0.70 16 7 C 0.17 2.19 2.56 -67.93 -0.17 2.02 16 8 H 0.09 1.41 7.58 -51.92 -0.39 1.01 16 9 C -0.16 -1.94 9.48 37.16 0.35 -1.59 16 10 N -0.75 -11.62 4.80 -58.68 -0.28 -11.90 16 11 C 0.70 14.79 8.53 -86.92 -0.74 14.05 16 12 O -0.60 -15.37 16.01 5.29 0.08 -15.28 16 13 N -0.73 -16.18 5.55 -66.41 -0.37 -16.54 16 14 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 15 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 16 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 S 0.10 1.21 23.30 -107.50 -2.51 -1.30 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.39 5.08 8.61 -40.82 -0.35 4.73 16 35 H 0.39 7.39 8.34 -40.82 -0.34 7.05 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -33.70 340.24 -9.96 -43.66 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.69 Total: 7.36 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.04 Total: -1.43 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.09 Total: -54.27 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.28 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.70 -9.96 -43.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.480 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds