Wall clock time and date at job start Tue Mar 31 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00061 * 2 1 4 4 H 1.48507 * 109.47273 * 270.00133 * 3 2 1 5 5 H 1.48501 * 109.47311 * 30.00069 * 3 2 1 6 6 H 1.48497 * 109.47371 * 150.00162 * 3 2 1 7 7 C 1.37874 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99897 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99835 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99664 * 179.97438 * 10 9 7 12 12 O 1.21586 * 120.00376 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99418 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99353 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46856 * 180.02562 * 14 13 11 16 16 O 1.42895 * 109.47006 * 64.99442 * 15 14 13 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.97002 * 119.99751 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46987 * 59.99689 * 9 7 2 26 26 H 1.08992 * 109.46728 * 299.99465 * 9 7 2 27 27 H 0.97001 * 119.99616 * 359.97438 * 10 9 7 28 28 H 0.96995 * 120.00605 * 0.02562 * 13 11 10 29 29 H 1.08997 * 109.47700 * 60.00502 * 14 13 11 30 30 H 1.08996 * 109.47102 * 299.99743 * 14 13 11 31 31 H 1.09005 * 109.46539 * 304.99929 * 15 14 13 32 32 H 1.08995 * 109.46786 * 185.00066 * 15 14 13 33 33 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 35 35 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 5.3249 -2.8216 -0.0001 12 8 6.1150 -1.8975 0.0004 13 7 5.7740 -4.0923 0.0003 14 6 7.2144 -4.3600 0.0008 15 6 7.4522 -5.8715 0.0005 16 8 6.9642 -6.4302 -1.2207 17 6 7.0998 -7.7732 -1.3826 18 6 7.6851 -8.5372 -0.3837 19 6 7.8270 -9.9011 -0.5517 20 6 7.3753 -10.5070 -1.7118 21 9 7.5092 -11.8418 -1.8723 22 6 6.7861 -9.7464 -2.7074 23 6 6.6477 -8.3815 -2.5443 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8751 -0.6797 -0.8894 27 1 3.3694 -3.3126 -0.0001 28 1 5.1437 -4.8296 0.0002 29 1 7.6653 -3.9211 0.8908 30 1 7.6658 -3.9214 -0.8892 31 1 6.9261 -6.3221 0.8421 32 1 8.5199 -6.0712 0.0905 33 1 8.0329 -8.0655 0.5234 34 1 8.2863 -10.4956 0.2241 35 1 6.4346 -10.2203 -3.6120 36 1 6.1877 -7.7885 -3.3209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426433137.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:26 Heat of formation + Delta-G solvation = -89.284715 kcal Electronic energy + Delta-G solvation = -20545.660043 eV Core-core repulsion = 16944.827758 eV Total energy + Delta-G solvation = -3600.832285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.14346 -40.52808 -39.30390 -37.68981 -34.84986 -34.07903 -32.34938 -31.69711 -30.42552 -29.11062 -27.47204 -24.26669 -23.01261 -22.33867 -21.64787 -20.36022 -18.80909 -18.31772 -17.73659 -17.00721 -16.54681 -16.28798 -15.88416 -15.56093 -15.23801 -14.94776 -14.53080 -14.34832 -14.03542 -13.77114 -13.58436 -13.22708 -13.07187 -12.83164 -12.63607 -12.32741 -12.10266 -11.89792 -11.26388 -11.14755 -10.96691 -10.74792 -9.95527 -9.62873 -9.60223 -9.44560 -8.91355 -8.74180 -8.48073 -8.01207 -6.19431 -4.21266 0.74187 0.82799 2.73307 3.16640 3.21516 3.29478 3.36563 3.44503 3.79979 3.93626 4.23188 4.35143 4.35613 4.52252 4.67108 4.69327 4.83959 4.91656 5.03287 5.12640 5.16214 5.43913 5.55443 5.68885 5.70585 5.76339 5.82739 6.29963 6.68308 6.74731 6.97042 7.13065 7.24667 7.41327 7.56463 8.29321 8.69607 8.82438 9.19999 9.41961 10.92576 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.033230 B = 0.002567 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.413011 B =10903.691662 C =11460.588616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.722 5.722 11 C 0.696 3.304 12 O -0.605 6.605 13 N -0.754 5.754 14 C 0.145 3.855 15 C 0.046 3.954 16 O -0.305 6.305 17 C 0.125 3.875 18 C -0.183 4.183 19 C -0.113 4.113 20 C 0.055 3.945 21 F -0.143 7.143 22 C -0.112 4.112 23 C -0.123 4.123 24 H 0.267 0.733 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.393 0.607 28 H 0.396 0.604 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.451 -20.723 -1.392 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.374 5.374 11 C 0.395 3.605 12 O -0.485 6.485 13 N -0.412 5.412 14 C 0.020 3.980 15 C -0.029 4.029 16 O -0.218 6.218 17 C 0.079 3.921 18 C -0.202 4.202 19 C -0.131 4.131 20 C 0.035 3.965 21 F -0.122 7.122 22 C -0.131 4.131 23 C -0.141 4.141 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.226 0.774 28 H 0.230 0.770 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 16.919 -19.594 -1.517 25.933 hybrid contribution -0.149 -0.189 0.173 0.296 sum 16.771 -19.783 -1.344 25.970 Atomic orbital electron populations 1.69884 1.06214 1.27397 1.49597 1.24787 0.94795 0.99181 0.93917 0.86804 0.80577 0.83164 0.79061 1.19848 1.20959 1.18442 1.21099 0.88575 0.95192 1.53134 0.90302 1.19363 0.94820 0.77628 0.96646 1.45390 1.03708 1.11083 1.77216 1.16089 0.83608 0.82571 0.78216 1.90865 1.55414 1.43211 1.58995 1.45031 1.07026 1.06849 1.82277 1.21116 0.82271 0.91112 1.03520 1.23231 0.99908 0.94286 0.85524 1.86200 1.77614 1.18252 1.39753 1.19058 0.95525 0.83147 0.94327 1.21149 1.04834 0.93992 1.00196 1.20939 1.00421 0.94946 0.96837 1.17593 1.04557 0.77715 0.96590 1.91493 1.94293 1.30466 1.95905 1.20990 0.99615 0.93377 0.99120 1.20360 1.02947 0.93671 0.97136 0.92288 0.95907 0.96339 0.77415 0.77049 0.89520 0.90638 0.90964 0.90167 0.84365 0.84504 0.84022 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.54 -14.97 9.83 -34.44 -0.34 -15.31 16 8 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 9 C 0.24 5.95 4.50 -5.19 -0.02 5.92 16 10 N -0.72 -14.91 5.55 -66.41 -0.37 -15.28 16 11 C 0.70 13.59 8.57 -86.92 -0.74 12.84 16 12 O -0.61 -14.18 16.34 5.29 0.09 -14.10 16 13 N -0.75 -10.45 5.51 -65.22 -0.36 -10.81 16 14 C 0.14 1.59 6.06 -4.03 -0.02 1.56 16 15 C 0.05 0.35 4.87 37.16 0.18 0.53 16 16 O -0.30 -2.95 10.08 -19.58 -0.20 -3.15 16 17 C 0.13 1.11 6.69 -39.23 -0.26 0.85 16 18 C -0.18 -1.36 9.04 -39.44 -0.36 -1.71 16 19 C -0.11 -0.85 10.02 -39.53 -0.40 -1.25 16 20 C 0.05 0.48 7.30 -39.42 -0.29 0.19 16 21 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 22 C -0.11 -0.89 10.02 -39.53 -0.40 -1.28 16 23 C -0.12 -1.03 9.99 -39.44 -0.39 -1.43 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 26 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 27 H 0.39 7.13 8.34 -40.82 -0.34 6.79 16 28 H 0.40 4.58 8.49 -40.82 -0.35 4.24 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 32 H 0.08 0.43 7.67 -51.93 -0.40 0.03 16 33 H 0.14 0.73 6.30 -52.49 -0.33 0.40 16 34 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -33.92 319.09 -7.30 -41.22 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.27 Total: 4.59 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -3.14 Total: 3.00 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.05 Total: -51.94 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.11 Total: -17.25 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.92 -7.30 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426433137.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.063 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds