Wall clock time and date at job start Tue Mar 31 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99938 * 2 1 4 4 H 1.48501 * 109.47179 * 270.00364 * 3 2 1 5 5 H 1.48504 * 109.47037 * 30.00386 * 3 2 1 6 6 H 1.48494 * 109.47136 * 149.99949 * 3 2 1 7 7 C 1.37874 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00348 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47422 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99956 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00169 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99958 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00051 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47154 * 324.99441 * 14 13 11 16 16 C 1.52998 * 109.47453 * 84.99568 * 14 13 11 17 17 O 1.42902 * 109.47085 * 65.00196 * 16 14 13 18 18 C 1.50703 * 109.46959 * 204.99564 * 14 13 11 19 19 C 1.38265 * 119.98460 * 139.99809 * 18 14 13 20 20 C 1.38230 * 120.05232 * 179.97438 * 19 18 14 21 21 C 1.38221 * 120.01866 * 359.97438 * 20 19 18 22 22 C 1.38437 * 119.97771 * 359.97438 * 21 20 19 23 23 F 1.35096 * 120.02231 * 180.02562 * 22 21 20 24 24 C 1.38170 * 119.98887 * 319.97570 * 18 14 13 25 25 H 0.96992 * 120.00336 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47359 * 59.99840 * 9 7 2 27 27 H 1.09009 * 109.47374 * 300.00321 * 9 7 2 28 28 H 0.96997 * 119.99805 * 359.97438 * 10 9 7 29 29 H 0.96999 * 119.99747 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47101 * 184.99805 * 16 14 13 31 31 H 1.08999 * 109.47313 * 304.99962 * 16 14 13 32 32 H 0.96704 * 113.99967 * 180.02562 * 17 16 14 33 33 H 1.07998 * 119.98228 * 359.70181 * 19 18 14 34 34 H 1.07993 * 119.98797 * 179.97438 * 20 19 18 35 35 H 1.08010 * 120.00681 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.01158 * 0.04483 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5585 -5.1056 -0.0011 13 7 2.6298 -5.9078 -0.0005 14 6 2.1415 -7.2889 -0.0017 15 1 1.2261 -7.3512 0.5868 16 6 1.8544 -7.7273 -1.4391 17 8 3.0756 -7.7575 -2.1808 18 6 3.1875 -8.1920 0.5995 19 6 2.8103 -9.2210 1.4424 20 6 3.7686 -10.0505 1.9942 21 6 5.1052 -9.8523 1.7032 22 6 5.4839 -8.8230 0.8585 23 9 6.7900 -8.6287 0.5730 24 6 4.5231 -7.9917 0.3077 25 1 -0.4850 0.8399 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 3.1568 -3.4354 -0.0009 29 1 3.5834 -5.7305 -0.0002 30 1 1.4081 -8.7217 -1.4335 31 1 1.1648 -7.0222 -1.9032 32 1 2.9689 -8.0273 -3.1033 33 1 1.7665 -9.3742 1.6735 34 1 3.4728 -10.8536 2.6528 35 1 5.8538 -10.5003 2.1347 36 1 4.8176 -7.1876 -0.3505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426452967.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:20 Heat of formation + Delta-G solvation = -102.565216 kcal Electronic energy + Delta-G solvation = -21494.772961 eV Core-core repulsion = 17893.364790 eV Total energy + Delta-G solvation = -3601.408171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.00655 -40.07381 -38.76895 -36.90360 -34.63116 -33.98762 -32.37569 -31.19131 -30.77029 -28.44430 -26.81468 -23.92475 -23.09921 -22.47850 -20.98120 -20.01689 -18.48493 -17.42061 -17.35971 -16.44402 -16.32861 -16.01775 -15.76061 -15.58675 -15.06098 -14.74694 -14.27594 -14.20911 -13.65491 -13.63152 -13.40023 -12.90080 -12.79698 -12.33144 -12.05714 -11.94686 -11.71040 -11.68745 -11.11390 -10.93857 -10.87014 -10.28936 -10.08585 -9.45896 -9.35738 -9.14269 -8.90720 -8.77505 -8.67813 -7.76323 -6.14156 -4.20485 0.93924 1.03864 3.21108 3.26190 3.32479 3.35270 3.49219 3.88813 4.04764 4.24313 4.34515 4.42600 4.60149 4.83178 4.96902 5.05950 5.18735 5.20898 5.22253 5.35143 5.50993 5.62924 5.75511 5.85129 5.95723 6.07941 6.27694 6.69641 6.81988 7.11941 7.51609 7.54820 7.57205 7.58010 7.91123 8.05204 8.77573 8.93849 9.32529 9.48650 10.96123 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.003504 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.963168 B = 7989.590192 C = 8483.970873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.695 3.305 12 O -0.603 6.603 13 N -0.746 5.746 14 C 0.209 3.791 15 H 0.111 0.889 16 C 0.067 3.933 17 O -0.567 6.567 18 C -0.054 4.054 19 C -0.121 4.121 20 C -0.093 4.093 21 C -0.157 4.157 22 C 0.095 3.905 23 F -0.141 7.141 24 C -0.122 4.122 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.387 0.613 29 H 0.393 0.607 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.376 0.624 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.720 -20.958 0.504 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.395 3.605 12 O -0.483 6.483 13 N -0.403 5.403 14 C 0.103 3.897 15 H 0.129 0.871 16 C -0.013 4.013 17 O -0.372 6.372 18 C -0.055 4.055 19 C -0.140 4.140 20 C -0.111 4.111 21 C -0.176 4.176 22 C 0.076 3.924 23 F -0.120 7.120 24 C -0.141 4.141 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.219 0.781 29 H 0.228 0.772 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.223 0.777 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.700 -20.754 1.080 22.163 hybrid contribution 1.306 0.919 -0.634 1.718 sum 9.006 -19.835 0.445 21.789 Atomic orbital electron populations 1.69977 1.06082 1.27252 1.49044 1.24939 0.94911 0.99389 0.94768 0.86412 0.79621 0.82652 0.78193 1.20490 1.21023 1.19764 1.21234 0.93300 0.90449 1.53017 0.91940 1.18986 0.87755 0.81050 0.97597 1.45717 1.10867 1.04360 1.76965 1.16130 0.85126 0.81084 0.78179 1.90861 1.14145 1.84245 1.59054 1.45176 1.09117 1.04038 1.81977 1.19650 0.95940 0.79916 0.94218 0.87085 1.22650 0.86683 0.99735 0.92206 1.86465 1.31851 1.92084 1.26766 1.19710 0.93507 0.96135 0.96128 1.21105 1.00322 0.95314 0.97216 1.20943 0.91778 0.99192 0.99161 1.21144 0.97630 0.98645 1.00163 1.17694 0.78067 0.97523 0.99115 1.91500 1.33475 1.94729 1.92277 1.20935 0.92090 1.00425 1.00630 0.92482 0.95738 0.95705 0.78105 0.77198 0.93025 0.91993 0.77711 0.85054 0.84956 0.84966 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.18 5.43 -5.19 -0.03 7.16 16 10 N -0.73 -15.74 5.55 -66.41 -0.37 -16.11 16 11 C 0.69 14.26 8.53 -86.92 -0.74 13.52 16 12 O -0.60 -14.60 16.01 5.29 0.08 -14.52 16 13 N -0.75 -11.44 4.98 -59.82 -0.30 -11.74 16 14 C 0.21 2.73 2.61 -69.09 -0.18 2.55 16 15 H 0.11 1.53 7.44 -51.93 -0.39 1.15 16 16 C 0.07 0.78 6.84 37.16 0.25 1.04 16 17 O -0.57 -6.22 12.04 -35.23 -0.42 -6.65 16 18 C -0.05 -0.61 4.83 -104.64 -0.51 -1.11 16 19 C -0.12 -1.14 9.67 -39.57 -0.38 -1.53 16 20 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 21 C -0.16 -1.46 10.03 -39.51 -0.40 -1.85 16 22 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 23 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 24 C -0.12 -1.41 8.03 -39.52 -0.32 -1.73 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.39 7.29 8.34 -40.82 -0.34 6.95 16 29 H 0.39 5.33 6.88 -40.82 -0.28 5.05 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.38 2.65 9.12 45.56 0.42 3.06 16 33 H 0.13 1.00 8.03 -52.49 -0.42 0.58 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.14 1.62 6.67 -52.49 -0.35 1.27 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -33.62 319.09 -7.28 -40.90 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -3.43 Total: 10.33 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -3.40 Total: 4.15 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.07 Total: -53.35 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.34 Total: -21.16 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.62 -7.28 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426452967.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.667 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds