Wall clock time and date at job start Tue Mar 31 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36036 * 116.99588 * 2 1 4 4 C 1.38647 * 119.99521 * 359.97438 * 3 2 1 5 5 C 1.38128 * 120.03537 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.98389 * 180.02562 * 5 4 3 7 7 C 1.38838 * 120.02849 * 359.97438 * 5 4 3 8 8 N 1.40148 * 120.00556 * 180.02562 * 7 5 4 9 9 C 1.34775 * 120.00033 * 204.79949 * 8 7 5 10 10 O 1.21591 * 119.99879 * 5.63226 * 9 8 7 11 11 N 1.34777 * 120.00065 * 185.62109 * 9 8 7 12 12 C 1.46501 * 120.00159 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47086 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00256 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99840 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00254 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99752 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46972 * 90.00838 * 17 15 13 19 19 H 1.48509 * 109.46848 * 210.00416 * 17 15 13 20 20 H 1.48495 * 109.47526 * 330.00333 * 17 15 13 21 21 C 1.38817 * 119.98707 * 0.02954 * 7 5 4 22 22 C 1.38286 * 119.95959 * 359.71597 * 21 7 5 23 23 F 1.35096 * 120.01188 * 180.29919 * 22 21 7 24 24 H 1.08997 * 109.47357 * 300.00149 * 1 2 3 25 25 H 1.09000 * 109.46849 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46971 * 60.00542 * 1 2 3 27 27 H 1.07997 * 119.97914 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47644 * 89.99735 * 6 5 4 29 29 H 1.09005 * 109.47381 * 209.99861 * 6 5 4 30 30 H 1.09006 * 109.47386 * 329.99200 * 6 5 4 31 31 H 0.97003 * 119.99739 * 24.80846 * 8 7 5 32 32 H 0.96996 * 119.99993 * 0.02562 * 11 9 8 33 33 H 1.09004 * 109.47174 * 300.00621 * 12 11 9 34 34 H 1.08997 * 109.46383 * 60.00301 * 12 11 9 35 35 H 0.97000 * 120.00603 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.01727 * 180.02562 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.2912 2.3748 -0.0005 5 6 1.9173 3.6060 -0.0011 6 6 1.0952 4.8690 -0.0011 7 6 3.3037 3.6804 -0.0005 8 7 3.9385 4.9299 -0.0005 9 6 5.1885 5.0507 -0.4896 10 8 5.7269 4.1002 -1.0236 11 7 5.8418 6.2251 -0.3870 12 6 7.2004 6.3566 -0.9191 13 6 7.7009 7.7574 -0.6782 14 1 7.0699 8.4779 -0.1789 15 6 8.9640 8.1196 -1.0959 16 7 9.4010 9.3419 -0.8852 17 14 10.0549 6.8736 -1.9600 18 1 9.8210 6.9425 -3.4249 19 1 11.4794 7.1786 -1.6714 20 1 9.7319 5.5092 -1.4708 21 6 4.0609 2.5170 -0.0001 22 6 3.4336 1.2847 0.0058 23 9 4.1695 0.1518 0.0123 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 0.2127 2.3177 -0.0014 28 1 0.8973 5.1739 1.0265 29 1 1.6427 5.6590 -0.5153 30 1 0.1509 4.6880 -0.5146 31 1 3.4781 5.7078 0.3516 32 1 5.4124 6.9833 0.0392 33 1 7.8572 5.6452 -0.4184 34 1 7.1924 6.1523 -1.9898 35 1 10.2897 9.5967 -1.1788 36 1 5.1394 2.5743 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488631064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:19 Heat of formation + Delta-G solvation = -82.683280 kcal Electronic energy + Delta-G solvation = -21520.053284 eV Core-core repulsion = 17919.507259 eV Total energy + Delta-G solvation = -3600.546025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.68387 -40.70020 -39.55378 -37.71526 -34.54051 -34.19540 -32.48721 -32.39300 -29.53751 -28.09615 -27.73132 -26.14902 -23.29136 -22.16859 -21.44975 -20.52171 -18.68084 -18.20744 -17.66017 -16.89187 -16.31968 -16.17726 -15.61164 -15.22849 -15.03142 -14.66714 -14.50031 -14.36010 -14.13510 -13.85450 -13.62358 -13.20032 -12.60518 -12.51559 -12.39186 -12.24741 -12.14727 -11.89506 -11.50110 -11.27837 -11.03790 -10.80049 -10.01102 -9.94598 -9.66438 -9.52610 -8.83529 -8.75639 -8.32033 -7.62008 -6.25472 -4.28463 1.03833 1.20087 2.86369 3.06401 3.24912 3.28110 3.32931 3.40756 3.74122 4.20115 4.30314 4.48483 4.60801 4.77562 4.81163 4.88663 4.94399 5.10072 5.19680 5.29643 5.36318 5.43068 5.64039 5.73689 5.88948 5.99585 6.14057 6.41884 6.62893 6.81308 7.01749 7.08475 7.19346 7.22075 7.40046 8.17337 8.48849 8.71701 8.93461 9.34015 10.86279 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.031291 B = 0.003574 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.606571 B = 7832.697959 C = 8612.081898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.067 3.933 4 C -0.159 4.159 5 C -0.099 4.099 6 C -0.113 4.113 7 C 0.179 3.821 8 N -0.685 5.685 9 C 0.691 3.309 10 O -0.582 6.582 11 N -0.712 5.712 12 C 0.236 3.764 13 C -0.546 4.546 14 H 0.080 0.920 15 C 0.079 3.921 16 N -0.891 5.891 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.129 4.129 22 C 0.089 3.911 23 F -0.131 7.131 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.139 0.861 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.407 0.593 32 H 0.395 0.605 33 H 0.027 0.973 34 H 0.022 0.978 35 H 0.268 0.732 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.485 -12.300 3.592 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.020 3.980 4 C -0.179 4.179 5 C -0.103 4.103 6 C -0.170 4.170 7 C 0.081 3.919 8 N -0.333 5.333 9 C 0.391 3.609 10 O -0.460 6.460 11 N -0.364 5.364 12 C 0.114 3.886 13 C -0.583 4.583 14 H 0.098 0.902 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.151 4.151 22 C 0.069 3.931 23 F -0.110 7.110 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.156 0.844 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.243 0.757 32 H 0.229 0.771 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.582 -13.158 3.068 23.791 hybrid contribution 0.109 0.219 -0.134 0.279 sum -19.473 -12.940 2.934 23.564 Atomic orbital electron populations 1.23052 0.78462 1.03923 1.01283 1.86142 1.21256 1.25865 1.89365 1.18869 0.90648 0.85439 1.03016 1.20664 0.99746 0.90250 1.07202 1.19370 0.91520 0.95574 1.03833 1.20725 0.99384 0.94308 1.02556 1.16953 0.89978 0.84677 1.00253 1.42769 1.15992 1.09236 1.65286 1.16143 0.80350 0.84776 0.79591 1.90853 1.67460 1.38439 1.49253 1.45469 1.18399 1.10670 1.61858 1.19459 0.76997 0.97996 0.94134 1.21050 1.01506 0.94892 1.40891 0.90215 1.24772 0.97416 0.95328 0.95006 1.69869 1.18924 1.17891 1.46143 0.86820 0.79904 0.82451 0.80547 1.19797 1.20856 1.18387 1.21353 1.03258 0.88592 1.01851 1.16746 0.85595 0.82792 1.07988 1.91491 1.76693 1.48635 1.94174 0.92653 0.88265 0.92634 0.84376 0.90796 0.91223 0.91016 0.75675 0.77125 0.95524 0.96013 0.92173 0.81251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.78 10.36 -19.85 -0.21 -3.99 16 3 C 0.07 0.87 6.69 -39.18 -0.26 0.61 16 4 C -0.16 -1.68 8.68 -39.47 -0.34 -2.02 16 5 C -0.10 -1.10 5.90 -104.44 -0.62 -1.72 16 6 C -0.11 -0.87 9.44 36.01 0.34 -0.53 16 7 C 0.18 2.52 6.41 -83.62 -0.54 1.99 16 8 N -0.69 -9.60 4.99 -14.19 -0.07 -9.67 16 9 C 0.69 12.94 8.37 -86.92 -0.73 12.21 16 10 O -0.58 -13.01 13.51 5.29 0.07 -12.93 16 11 N -0.71 -13.82 5.55 -66.42 -0.37 -14.19 16 12 C 0.24 5.65 4.50 -5.20 -0.02 5.63 16 13 C -0.55 -14.58 9.83 -34.44 -0.34 -14.92 16 14 H 0.08 2.21 7.84 -52.49 -0.41 1.79 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 17 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C -0.13 -2.09 8.69 -39.35 -0.34 -2.43 16 22 C 0.09 1.38 7.31 -39.32 -0.29 1.09 16 23 F -0.13 -2.17 17.11 2.25 0.04 -2.13 16 24 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.14 1.01 6.29 -52.49 -0.33 0.68 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.54 6.98 -51.93 -0.36 0.18 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.41 4.25 7.41 -40.82 -0.30 3.95 16 32 H 0.40 6.55 8.34 -40.82 -0.34 6.21 16 33 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 34 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.17 3.15 5.78 -52.49 -0.30 2.84 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -32.98 310.21 -6.04 -39.02 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.04 Total: 4.82 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.24 Total: 3.19 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.33 Total: -49.14 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.13 Total: -16.92 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.98 -6.04 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488631064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.660 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds