Wall clock time and date at job start Tue Mar 31 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 S 1.81402 * 109.47089 * 89.99833 * 13 12 11 15 15 C 1.81397 * 102.99865 * 179.97438 * 14 13 12 16 16 C 1.53009 * 109.47170 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47334 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.47210 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47210 * 180.02562 * 18 17 16 20 20 F 1.39899 * 109.47056 * 180.02562 * 19 18 17 21 21 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 22 22 C 1.37614 * 120.25107 * 359.44663 * 21 12 11 23 23 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.13074 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 26 26 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 27 27 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 28 28 H 1.09002 * 109.47254 * 300.00139 * 15 14 13 29 29 H 1.09002 * 109.47435 * 60.00647 * 15 14 13 30 30 H 1.09002 * 109.47067 * 300.00158 * 16 15 14 31 31 H 1.08996 * 109.46763 * 59.99656 * 16 15 14 32 32 H 1.08999 * 109.46650 * 300.00194 * 17 16 15 33 33 H 1.09001 * 109.46978 * 59.99619 * 17 16 15 34 34 H 1.09002 * 109.47242 * 300.00153 * 18 17 16 35 35 H 1.09010 * 109.46750 * 59.99875 * 18 17 16 36 36 H 1.09002 * 109.47143 * 300.00213 * 19 18 17 37 37 H 1.09001 * 109.46978 * 59.99758 * 19 18 17 38 38 H 1.08003 * 119.87291 * 179.69838 * 21 12 11 39 39 H 1.08002 * 120.12976 * 180.27263 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 16 0.0961 -6.6672 3.0304 15 6 -0.8632 -8.1750 3.3415 16 6 -0.3590 -8.8453 4.6212 17 6 -1.1676 -10.1174 4.8833 18 6 -0.6630 -10.7880 6.1626 19 6 -1.4712 -12.0605 6.4243 20 9 -1.0102 -12.6733 7.5944 21 6 -0.4120 -3.5333 1.5634 22 6 0.2229 -2.3640 1.2121 23 1 -0.4850 0.8401 -0.0004 24 1 2.6869 -3.6941 -0.7378 25 1 1.5339 -5.7607 -0.0797 26 1 -1.6958 -5.8233 1.6614 27 1 -0.5250 -6.7642 0.7063 28 1 -1.9163 -7.9183 3.4569 29 1 -0.7460 -8.8600 2.5018 30 1 0.6942 -9.1019 4.5063 31 1 -0.4764 -8.1602 5.4607 32 1 -2.2208 -9.8612 4.9981 33 1 -1.0498 -10.8023 4.0436 34 1 0.3902 -11.0442 6.0474 35 1 -0.7806 -10.1031 7.0025 36 1 -2.5246 -11.8046 6.5393 37 1 -1.3533 -12.7450 5.5843 38 1 -1.2815 -3.5021 2.2032 39 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000551004040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:09 Heat of formation + Delta-G solvation = -74.404547 kcal Electronic energy + Delta-G solvation = -18043.467610 eV Core-core repulsion = 14989.573792 eV Total energy + Delta-G solvation = -3053.893818 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.91298 -37.64853 -36.32808 -34.02967 -31.88107 -31.25177 -29.34387 -27.62335 -26.48353 -24.00888 -22.42343 -21.42605 -21.04577 -20.00444 -17.35953 -16.85385 -16.22021 -15.77953 -15.54400 -15.33716 -15.27644 -14.38055 -14.07679 -13.96990 -13.74855 -13.61186 -13.03866 -12.61591 -12.27892 -12.11333 -11.99121 -11.86956 -11.66831 -11.50643 -11.21246 -11.11064 -11.07367 -10.83977 -10.80325 -10.70426 -10.31151 -9.76925 -9.53822 -9.44391 -9.15118 -7.52508 -7.33624 -7.23917 -6.84076 -4.40889 1.86429 2.74980 3.00538 3.02998 3.04905 3.09820 3.38171 3.87863 4.15737 4.36992 4.51603 4.58514 4.69536 4.75150 5.04210 5.09993 5.13156 5.46877 5.50875 5.53858 5.56817 5.57386 5.61916 5.77961 5.81315 5.96656 6.07558 6.14403 6.29925 6.34741 6.90199 7.00091 7.21139 7.29385 7.55183 7.78047 7.98974 8.04070 8.22462 8.56924 8.81728 8.90128 10.09775 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.050387 B = 0.002222 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.568722 B =12595.811030 C =12695.820145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.228 4.228 11 C -0.067 4.067 12 C -0.211 4.211 13 C 0.000 4.000 14 S -0.283 6.283 15 C -0.095 4.095 16 C -0.101 4.101 17 C -0.113 4.113 18 C -0.154 4.154 19 C 0.060 3.940 20 F -0.222 7.222 21 C -0.078 4.078 22 C -0.168 4.168 23 H 0.282 0.718 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 -15.120 7.217 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.113 3.887 10 C -0.248 4.248 11 C -0.087 4.087 12 C -0.215 4.215 13 C -0.146 4.146 14 S -0.052 6.052 15 C -0.244 4.244 16 C -0.139 4.139 17 C -0.153 4.153 18 C -0.192 4.192 19 C 0.005 3.995 20 F -0.203 7.203 21 C -0.099 4.099 22 C -0.187 4.187 23 H 0.093 0.907 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.670 -14.615 7.862 16.997 hybrid contribution -0.717 0.265 -0.790 1.099 sum -4.387 -14.350 7.072 16.589 Atomic orbital electron populations 1.69825 1.07669 1.29414 1.34338 1.25960 0.94758 1.01498 0.92140 0.86289 0.80821 0.80501 0.79111 1.19502 1.19948 1.18316 1.19660 0.98177 0.91242 1.39441 0.90235 1.17673 0.90901 0.92072 0.88044 1.20952 1.03879 0.92818 1.07126 1.20364 0.94719 0.96566 0.97089 1.18390 1.02255 0.91293 1.09516 1.21960 1.00000 0.98617 0.94059 1.87393 1.52488 1.28258 1.37073 1.23328 1.01886 0.98331 1.00832 1.21289 1.00235 0.95929 0.96453 1.21505 1.00131 0.96836 0.96807 1.22184 1.00989 0.96594 0.99388 1.22043 0.98897 0.94448 0.84101 1.92765 1.90969 1.84902 1.51656 1.20512 0.98273 0.92493 0.98580 1.21288 0.99387 0.96730 1.01307 0.90722 0.88806 0.89317 0.91277 0.91360 0.90805 0.90824 0.90994 0.90969 0.91485 0.91502 0.90600 0.90586 0.90824 0.90819 0.89344 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.00 10.97 55.55 0.61 -19.39 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.94 9.05 -37.74 -0.34 -12.28 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.12 3.08 5.57 -106.83 -0.60 2.49 16 10 C -0.23 -5.58 9.80 -38.88 -0.38 -5.96 16 11 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 12 C -0.21 -4.59 5.16 -104.33 -0.54 -5.13 16 13 C 0.00 0.00 6.06 36.00 0.22 0.22 16 14 S -0.28 -4.74 21.72 -107.50 -2.33 -7.08 16 15 C -0.10 -1.13 5.94 37.16 0.22 -0.90 16 16 C -0.10 -0.99 5.22 -26.73 -0.14 -1.13 16 17 C -0.11 -0.81 5.21 -26.73 -0.14 -0.95 16 18 C -0.15 -1.08 5.67 -26.73 -0.15 -1.23 16 19 C 0.06 0.39 7.55 37.16 0.28 0.67 16 20 F -0.22 -2.16 17.36 2.25 0.04 -2.12 16 21 C -0.08 -1.83 9.67 -39.66 -0.38 -2.22 16 22 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 23 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 24 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 25 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 26 H 0.07 1.15 8.08 -51.92 -0.42 0.73 16 27 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 28 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.12 3.15 6.18 -52.49 -0.32 2.82 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -27.43 343.50 -10.51 -37.94 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.21 Total: 3.41 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: -2.76 Total: -31.22 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.61 Total: -19.39 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -2.33 Total: -7.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.43 -10.51 -37.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551004040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.467 kcal (2) G-P(sol) polarization free energy of solvation -27.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds