Wall clock time and date at job start Tue Mar 31 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99529 * 2 1 4 4 H 1.48496 * 109.46961 * 269.99671 * 3 2 1 5 5 H 1.48499 * 109.47131 * 30.00328 * 3 2 1 6 6 H 1.48501 * 109.47031 * 150.00075 * 3 2 1 7 7 C 1.37877 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99659 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46703 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46894 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47356 * 54.99959 * 11 10 9 13 13 N 1.46899 * 109.47193 * 294.99820 * 11 10 9 14 14 C 1.50698 * 109.47112 * 174.99971 * 11 10 9 15 15 O 1.21291 * 119.99834 * 99.99993 * 14 11 10 16 16 N 1.34782 * 119.99812 * 279.99581 * 14 11 10 17 17 C 1.40118 * 119.99635 * 175.54390 * 16 14 11 18 18 C 1.38728 * 120.07805 * 34.63851 * 17 16 14 19 19 C 1.38381 * 119.95843 * 179.79005 * 18 17 16 20 20 F 1.35093 * 119.94175 * 180.25734 * 19 18 17 21 21 C 1.38477 * 120.11404 * 0.48321 * 19 18 17 22 22 C 1.38249 * 120.15104 * 359.75480 * 21 19 18 23 23 C 1.38523 * 120.04331 * 0.02562 * 22 21 19 24 24 O 1.36012 * 120.05979 * 179.97438 * 23 22 21 25 25 H 0.96994 * 120.00445 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47284 * 299.99384 * 9 7 2 27 27 H 1.08994 * 109.47197 * 59.99673 * 9 7 2 28 28 H 1.08994 * 109.46735 * 299.99386 * 10 9 7 29 29 H 1.08994 * 109.47316 * 60.00046 * 10 9 7 30 30 H 1.00901 * 111.00207 * 300.00211 * 13 11 10 31 31 H 1.00908 * 111.00178 * 63.95396 * 13 11 10 32 32 H 0.96997 * 120.00105 * 355.55060 * 16 14 11 33 33 H 1.08000 * 120.01557 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.92322 * 179.72259 * 21 19 18 35 35 H 1.08009 * 119.97525 * 179.97438 * 22 21 19 36 36 H 0.96701 * 114.00300 * 270.02993 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9870 0.0012 12 1 0.7881 -5.0073 -0.8404 13 7 0.7293 -5.1182 1.2567 14 6 2.4552 -6.1297 -0.1227 15 8 2.7874 -6.7530 0.8634 16 7 2.9576 -6.4592 -1.3292 17 6 3.9336 -7.4593 -1.4322 18 6 3.9006 -8.5534 -0.5800 19 6 4.8632 -9.5418 -0.6868 20 9 4.8277 -10.6097 0.1399 21 6 5.8654 -9.4359 -1.6366 22 6 5.9055 -8.3451 -2.4850 23 6 4.9425 -7.3542 -2.3867 24 8 4.9820 -6.2806 -3.2209 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5570 -0.8896 28 1 2.8720 -3.6042 -0.8895 29 1 2.8722 -3.6042 0.8905 30 1 1.3494 -5.1022 2.0525 31 1 0.0245 -4.4001 1.3331 32 1 2.6437 -6.0039 -2.1260 33 1 3.1220 -8.6355 0.1639 34 1 6.6176 -10.2069 -1.7143 35 1 6.6887 -8.2651 -3.2245 36 1 5.4988 -5.5373 -2.8811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565037749.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:26 Heat of formation + Delta-G solvation = -107.953940 kcal Electronic energy + Delta-G solvation = -21498.001050 eV Core-core repulsion = 17896.359207 eV Total energy + Delta-G solvation = -3601.641843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.02022 -40.83705 -39.12537 -36.68014 -35.68878 -34.77701 -32.93523 -30.52939 -29.99648 -29.19765 -26.63435 -24.41117 -23.25858 -22.41554 -20.84360 -20.01638 -18.80952 -18.20979 -17.63704 -16.64004 -16.31719 -16.01908 -15.84032 -15.47598 -15.11777 -14.63742 -14.50888 -14.29627 -13.98834 -13.84749 -13.30188 -13.17043 -13.04955 -12.32501 -12.20663 -12.04591 -11.82495 -11.23172 -11.09243 -10.99046 -10.74713 -10.49000 -10.08266 -9.98405 -9.42600 -9.30624 -8.92468 -8.50087 -8.34400 -8.30386 -6.14211 -4.17853 0.77071 0.93302 2.58974 2.86292 3.23197 3.24580 3.30456 3.33143 3.91147 4.09225 4.34352 4.51769 4.76486 4.76910 5.02497 5.11573 5.22077 5.25041 5.42113 5.59731 5.63437 5.72203 5.90022 5.98362 6.15125 6.23565 6.38849 6.60695 6.76040 7.19384 7.36315 7.41596 7.45008 7.54353 7.77780 7.82283 8.11209 8.24032 8.87853 9.47534 10.96641 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.003576 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.515215 B = 7827.125338 C = 8576.564625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.138 4.138 11 C 0.078 3.922 12 H 0.102 0.898 13 N -0.830 5.830 14 C 0.525 3.475 15 O -0.515 6.515 16 N -0.670 5.670 17 C 0.162 3.838 18 C -0.148 4.148 19 C 0.109 3.891 20 F -0.136 7.136 21 C -0.160 4.160 22 C -0.098 4.098 23 C 0.067 3.933 24 O -0.491 6.491 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.347 0.653 31 H 0.358 0.642 32 H 0.420 0.580 33 H 0.158 0.842 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.465 -15.634 -5.381 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.038 4.038 12 H 0.119 0.881 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.388 6.388 16 N -0.317 5.317 17 C 0.065 3.935 18 C -0.169 4.169 19 C 0.089 3.911 20 F -0.115 7.115 21 C -0.179 4.179 22 C -0.117 4.117 23 C 0.019 3.981 24 O -0.301 6.301 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.174 0.826 32 H 0.257 0.743 33 H 0.175 0.825 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.891 -16.982 -5.226 19.868 hybrid contribution 0.995 2.335 0.189 2.545 sum 9.886 -14.647 -5.038 18.375 Atomic orbital electron populations 1.69938 1.06034 1.26893 1.50228 1.25010 0.94872 0.99343 0.95033 0.86577 0.79849 0.83315 0.78182 1.20567 1.21116 1.19885 1.21150 0.92998 0.90834 1.51405 0.92711 1.19107 0.93668 0.91018 0.97478 1.22409 0.99982 0.93724 1.01628 1.21476 0.94487 0.91687 0.96113 0.88057 1.58747 1.18442 1.56112 1.02997 1.21275 0.81008 0.84518 0.81840 1.90647 1.58714 1.52448 1.37038 1.43607 1.39699 1.37344 1.11028 1.17845 0.90877 0.89157 0.95573 1.21226 1.01261 0.91877 1.02543 1.17479 0.96945 0.85328 0.91300 1.91506 1.96172 1.53446 1.70360 1.20975 0.99675 1.00418 0.96872 1.21041 0.98143 0.93466 0.99047 1.18195 0.94498 0.91230 0.94164 1.84845 1.75730 1.25504 1.44007 0.92803 0.96319 0.96211 0.92390 0.92541 0.84008 0.82648 0.74262 0.82462 0.84321 0.84025 0.75070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -13.97 9.11 -34.44 -0.31 -14.28 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.43 16 10 C -0.14 -2.52 4.78 -26.73 -0.13 -2.65 16 11 C 0.08 1.22 3.21 -68.87 -0.22 1.00 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 13 N -0.83 -13.39 8.94 -5.65 -0.05 -13.44 16 14 C 0.53 8.09 6.93 -10.98 -0.08 8.02 16 15 O -0.51 -9.25 13.67 5.55 0.08 -9.17 16 16 N -0.67 -8.53 5.19 -9.75 -0.05 -8.58 16 17 C 0.16 2.05 6.32 -83.50 -0.53 1.53 16 18 C -0.15 -2.00 8.68 -39.35 -0.34 -2.34 16 19 C 0.11 1.32 7.29 -39.44 -0.29 1.03 16 20 F -0.14 -1.73 17.26 2.25 0.04 -1.69 16 21 C -0.16 -1.53 10.02 -39.49 -0.40 -1.93 16 22 C -0.10 -0.89 9.98 -39.47 -0.39 -1.29 16 23 C 0.07 0.71 6.72 -39.09 -0.26 0.45 16 24 O -0.49 -4.68 13.06 -19.78 -0.26 -4.94 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.35 5.66 8.58 -39.29 -0.34 5.33 16 31 H 0.36 5.80 7.55 -39.29 -0.30 5.51 16 32 H 0.42 4.55 8.57 -40.82 -0.35 4.20 16 33 H 0.16 2.40 6.20 -52.49 -0.33 2.08 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.39 2.42 9.06 45.56 0.41 2.84 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -31.08 317.06 -6.26 -37.34 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -3.33 Total: 13.16 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -3.18 Total: -8.50 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.64 Total: -46.74 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.18 Total: -14.11 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.08 -6.26 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565037749.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.617 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds