Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86807 * 119.99793 * 2 1 4 4 H 1.48498 * 109.47052 * 90.00137 * 3 2 1 5 5 H 1.48500 * 109.46919 * 209.99768 * 3 2 1 6 6 H 1.48495 * 109.47110 * 329.99593 * 3 2 1 7 7 C 1.39952 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00333 * 21.35737 * 7 2 1 9 9 C 1.41077 * 119.99806 * 201.35691 * 7 2 1 10 10 C 1.40734 * 120.30202 * 26.47517 * 9 7 2 11 11 C 1.36461 * 119.94536 * 179.97438 * 10 9 7 12 12 C 1.38863 * 120.57369 * 0.02562 * 11 10 9 13 13 C 1.38220 * 120.62073 * 359.97438 * 12 11 10 14 14 C 1.38649 * 120.02955 * 359.73829 * 13 12 11 15 15 N 1.39126 * 120.28330 * 180.25397 * 14 13 12 16 16 C 1.34780 * 120.00085 * 19.25536 * 15 14 13 17 17 O 1.21283 * 119.99701 * 5.71253 * 16 15 14 18 18 C 1.50694 * 120.00250 * 185.72390 * 16 15 14 19 19 C 1.50702 * 109.47491 * 179.97438 * 18 16 15 20 20 C 1.38645 * 120.79049 * 269.72117 * 19 18 16 21 21 C 1.38211 * 119.16148 * 179.79628 * 20 19 18 22 22 N 1.31869 * 120.76401 * 0.48436 * 21 20 19 23 23 C 1.31871 * 121.72238 * 359.74383 * 22 21 20 24 24 C 1.38207 * 120.76956 * 0.02562 * 23 22 21 25 25 H 0.96998 * 120.00180 * 174.94159 * 1 2 3 26 26 H 1.08002 * 120.02401 * 359.95413 * 10 9 7 27 27 H 1.07996 * 119.71207 * 179.97438 * 11 10 9 28 28 H 1.08003 * 119.68792 * 179.97438 * 12 11 10 29 29 H 1.08004 * 119.98510 * 180.02562 * 13 12 11 30 30 H 0.96996 * 120.00296 * 199.24601 * 15 14 13 31 31 H 1.09000 * 109.47161 * 299.99892 * 18 16 15 32 32 H 1.09005 * 109.47223 * 59.99346 * 18 16 15 33 33 H 1.08005 * 120.42031 * 359.97438 * 20 19 18 34 34 H 1.07996 * 119.61953 * 180.24903 * 21 20 19 35 35 H 1.08005 * 119.61770 * 179.97438 * 23 22 21 36 36 H 1.07993 * 120.42270 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 1.4001 5 1 3.5400 1.4402 -0.7000 6 1 1.4399 2.6527 -0.7001 7 6 2.0083 -1.2120 -0.0005 8 1 1.5239 -2.1151 -0.3416 9 6 3.3464 -1.2541 0.4444 10 6 3.8167 -0.3053 1.3713 11 6 5.1123 -0.3531 1.7971 12 6 5.9758 -1.3319 1.3233 13 6 5.5388 -2.2754 0.4126 14 6 4.2260 -2.2541 -0.0326 15 7 3.7791 -3.2044 -0.9452 16 6 4.4620 -4.3548 -1.1091 17 8 5.4051 -4.6078 -0.3896 18 6 4.0540 -5.3264 -2.1863 19 6 4.9718 -6.5214 -2.1588 20 6 6.1320 -6.5428 -2.9176 21 6 6.9515 -7.6545 -2.8638 22 7 6.6357 -8.6894 -2.1100 23 6 5.5382 -8.7056 -1.3790 24 6 4.6730 -7.6279 -1.3786 25 1 -0.4850 -0.8367 -0.0741 26 1 3.1528 0.4602 1.7450 27 1 5.4693 0.3771 2.5082 28 1 6.9985 -1.3562 1.6697 29 1 6.2192 -3.0324 0.0512 30 1 2.9760 -3.0392 -1.4635 31 1 3.0282 -5.6516 -2.0127 32 1 4.1210 -4.8394 -3.1592 33 1 6.3936 -5.7003 -3.5407 34 1 7.8591 -7.6774 -3.4486 35 1 5.3125 -9.5715 -0.7743 36 1 3.7755 -7.6474 -0.7782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577324673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = 17.669607 kcal Electronic energy + Delta-G solvation = -20790.127886 eV Core-core repulsion = 17624.702713 eV Total energy + Delta-G solvation = -3165.425173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44565 -39.53285 -37.48719 -34.04985 -33.93846 -33.71439 -31.23030 -30.29960 -29.56154 -27.72432 -24.82484 -23.50128 -22.95004 -21.89603 -20.52569 -19.64911 -18.29082 -17.16236 -16.63599 -16.49426 -16.29099 -15.62209 -15.00843 -14.73427 -14.31039 -14.01308 -13.72974 -13.55013 -13.44103 -12.88544 -12.72265 -12.53479 -12.40752 -12.14096 -11.68408 -11.43450 -10.99825 -10.86221 -10.55442 -9.94032 -9.81152 -9.67112 -9.54827 -9.52579 -9.16727 -9.15996 -8.83724 -7.80803 -7.43622 -7.07208 -4.61192 1.12297 1.19502 2.33593 2.65923 3.14283 3.15927 3.32447 3.48751 3.58958 3.93159 3.95434 4.40679 4.47003 4.48427 4.67368 5.04079 5.09683 5.16598 5.27314 5.35837 5.36205 5.61165 5.73338 5.92623 6.07221 6.17343 6.27206 6.34039 6.60377 6.66213 6.76434 6.96821 7.27589 7.30296 7.45400 7.61436 7.79144 7.86180 7.92860 8.14867 8.28649 8.42207 8.62408 8.76806 9.88784 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.004146 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.416014 B = 6752.678446 C = 7363.180972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.047 3.953 3 Si 1.074 2.926 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.290 1.290 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.087 3.913 10 C -0.235 4.235 11 C -0.087 4.087 12 C -0.230 4.230 13 C -0.092 4.092 14 C 0.021 3.979 15 N -0.634 5.634 16 C 0.498 3.502 17 O -0.530 6.530 18 C -0.107 4.107 19 C -0.013 4.013 20 C -0.159 4.159 21 C 0.097 3.903 22 N -0.491 5.491 23 C 0.097 3.903 24 C -0.159 4.159 25 H 0.286 0.714 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.407 0.593 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 -8.711 -6.506 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.173 4.173 3 Si 0.900 3.100 4 H -0.202 1.202 5 H -0.188 1.188 6 H -0.218 1.218 7 C -0.553 4.553 8 H 0.093 0.907 9 C 0.083 3.917 10 C -0.254 4.254 11 C -0.105 4.105 12 C -0.250 4.250 13 C -0.112 4.112 14 C -0.073 4.073 15 N -0.276 5.276 16 C 0.285 3.715 17 O -0.408 6.408 18 C -0.147 4.147 19 C -0.022 4.022 20 C -0.179 4.179 21 C -0.060 4.060 22 N -0.200 5.200 23 C -0.060 4.060 24 C -0.178 4.178 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.148 0.852 30 H 0.242 0.758 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.984 -8.046 -5.986 11.678 hybrid contribution -1.063 -0.862 -0.162 1.378 sum 4.921 -8.908 -6.148 11.890 Atomic orbital electron populations 1.70569 1.08092 1.33133 1.31551 1.27251 0.95508 1.04485 0.90099 0.83574 0.75500 0.72936 0.77940 1.20216 1.18793 1.21765 1.20362 0.96704 0.97071 1.41200 0.90749 1.17478 0.92216 0.91331 0.90709 1.20715 0.96559 1.04235 1.03900 1.20397 0.94066 0.97368 0.98718 1.20356 0.98789 1.00153 1.05722 1.21162 0.94027 0.98500 0.97487 1.17734 0.93172 0.96591 0.99766 1.42952 1.28509 1.16206 1.39919 1.20262 0.84028 0.81931 0.85301 1.90612 1.28919 1.75532 1.45772 1.20723 1.00201 0.93653 1.00105 1.19698 0.94519 0.93867 0.94074 1.22003 0.95055 0.99916 1.00925 1.22679 0.98660 0.88960 0.95693 1.67635 1.17685 1.28031 1.06634 1.22681 0.89768 0.97691 0.95827 1.22012 1.01736 0.94419 0.99678 0.90271 0.87361 0.88759 0.88652 0.85228 0.75755 0.87673 0.87554 0.84924 0.82874 0.82876 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.56 13.66 55.55 0.76 -19.81 16 2 C 0.05 1.16 5.38 -17.33 -0.09 1.06 16 3 Si 1.07 23.29 25.01 -169.99 -4.25 19.03 16 4 H -0.28 -5.75 6.37 56.52 0.36 -5.39 16 5 H -0.26 -5.70 7.10 56.52 0.40 -5.30 16 6 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.52 -12.99 8.75 -37.86 -0.33 -13.32 16 8 H 0.07 1.83 7.20 -52.49 -0.38 1.45 16 9 C 0.09 2.13 5.18 -106.65 -0.55 1.58 16 10 C -0.23 -5.58 7.33 -39.28 -0.29 -5.87 16 11 C -0.09 -1.91 9.97 -39.99 -0.40 -2.30 16 12 C -0.23 -5.05 10.04 -39.36 -0.39 -5.45 16 13 C -0.09 -2.10 8.78 -39.44 -0.35 -2.45 16 14 C 0.02 0.49 6.54 -83.17 -0.54 -0.05 16 15 N -0.63 -12.13 5.18 -9.48 -0.05 -12.18 16 16 C 0.50 8.67 7.67 -10.99 -0.08 8.59 16 17 O -0.53 -11.08 12.92 5.55 0.07 -11.00 16 18 C -0.11 -1.29 5.88 -29.04 -0.17 -1.47 16 19 C -0.01 -0.17 4.41 -104.32 -0.46 -0.63 16 20 C -0.16 -1.92 9.82 -39.44 -0.39 -2.30 16 21 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 22 N -0.49 -6.56 10.36 -13.25 -0.14 -6.70 16 23 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 24 C -0.16 -1.95 9.82 -39.44 -0.39 -2.34 16 25 H 0.29 7.01 8.73 -40.82 -0.36 6.65 16 26 H 0.11 2.53 4.35 -52.49 -0.23 2.31 16 27 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.13 2.96 5.39 -52.48 -0.28 2.68 16 30 H 0.41 7.01 7.33 -40.82 -0.30 6.71 16 31 H 0.11 1.05 8.10 -51.93 -0.42 0.63 16 32 H 0.11 1.03 8.10 -51.93 -0.42 0.61 16 33 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -30.16 307.18 -7.57 -37.73 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -3.76 Total: 11.31 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -4.83 Total: -23.01 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.57 Total: -38.69 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.25 Total: 19.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.16 -7.57 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577324673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.400 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds