Wall clock time and date at job start Tue Mar 31 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00053 * 2 1 4 4 H 1.48505 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47155 * 300.00093 * 3 2 1 6 6 H 1.48499 * 109.47162 * 60.00191 * 3 2 1 7 7 C 1.37877 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99874 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46793 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46994 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47267 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47450 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99808 * 359.97438 * 13 12 11 15 15 N 1.34766 * 120.00248 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00067 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47495 * 179.97438 * 16 15 13 18 18 C 1.50693 * 109.47298 * 180.02562 * 17 16 15 19 19 N 1.29027 * 124.91534 * 90.30653 * 18 17 16 20 20 C 1.31784 * 117.12400 * 180.22644 * 19 18 17 21 21 C 1.33641 * 114.49781 * 359.48088 * 20 19 18 22 22 S 1.70983 * 124.91700 * 269.99604 * 18 17 16 23 23 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.46887 * 60.00137 * 9 7 2 25 25 H 1.08998 * 109.47113 * 299.99782 * 9 7 2 26 26 H 1.08995 * 109.47626 * 59.99710 * 10 9 7 27 27 H 1.09003 * 109.47570 * 299.99949 * 10 9 7 28 28 H 1.08990 * 109.47401 * 59.99830 * 11 10 9 29 29 H 1.08998 * 109.46876 * 299.99780 * 11 10 9 30 30 H 1.08995 * 109.47697 * 59.99332 * 12 11 10 31 31 H 1.09006 * 109.46502 * 299.99754 * 12 11 10 32 32 H 0.97002 * 120.00172 * 359.97438 * 15 13 12 33 33 H 1.08999 * 109.47402 * 60.00174 * 16 15 13 34 34 H 1.08998 * 109.47073 * 299.99914 * 16 15 13 35 35 H 1.09003 * 109.47062 * 59.99580 * 17 16 15 36 36 H 1.09006 * 109.46638 * 300.00219 * 17 16 15 37 37 H 1.08002 * 122.75368 * 179.75456 * 20 19 18 38 38 H 1.08001 * 126.03830 * 180.26907 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 6 2.4745 -6.1500 -0.0031 13 6 1.7210 -7.4552 -0.0044 14 8 0.5081 -7.4552 -0.0043 15 7 2.3949 -8.6223 -0.0056 16 6 1.6624 -9.8910 -0.0063 17 6 2.6566 -11.0540 -0.0084 18 6 1.9031 -12.3590 -0.0097 19 7 1.5382 -13.0000 -1.0684 20 6 0.8806 -14.1282 -0.8909 21 6 0.6892 -14.4626 0.3888 22 16 1.4146 -13.2085 1.3915 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8876 27 1 2.8713 -3.6040 -0.8923 28 1 0.8532 -5.0442 -0.8921 29 1 0.8540 -5.0455 0.8878 30 1 3.1013 -6.0928 0.8867 31 1 3.1010 -6.0918 -0.8932 32 1 3.3649 -8.6223 -0.0061 33 1 1.0353 -9.9481 -0.8960 34 1 1.0362 -9.9495 0.8839 35 1 3.2841 -10.9972 0.8811 36 1 3.2825 -10.9953 -0.8989 37 1 0.5292 -14.7351 -1.7122 38 1 0.1798 -15.3457 0.7454 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588154949.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:52 Heat of formation + Delta-G solvation = -22.583064 kcal Electronic energy + Delta-G solvation = -18188.159829 eV Core-core repulsion = 15156.433120 eV Total energy + Delta-G solvation = -3031.726708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.16994 -39.61229 -35.90135 -34.80244 -32.79710 -32.45291 -30.01179 -29.08530 -26.17714 -25.03119 -23.21803 -22.08000 -20.61505 -20.14793 -19.93516 -18.39129 -16.80326 -16.41191 -16.12308 -15.99349 -15.77631 -15.06958 -14.77167 -14.41463 -14.13191 -13.79845 -13.53435 -13.32729 -12.59591 -12.43762 -12.26617 -11.95478 -11.74058 -11.66882 -11.56507 -10.97748 -10.51411 -10.46801 -10.38797 -10.11302 -9.87562 -9.81674 -9.58993 -9.36335 -9.21660 -9.19356 -8.94754 -8.28887 -5.93446 -3.95819 0.22890 0.89601 1.29159 2.37139 2.73096 3.01518 3.34455 3.41569 3.45535 3.75277 4.40662 4.50574 4.51317 4.66920 4.76655 4.92879 5.03664 5.07129 5.34456 5.37889 5.41999 5.48081 5.59244 5.70496 5.88890 6.16725 6.24456 6.33409 6.57528 6.86893 7.04995 7.22595 7.27988 7.40087 7.76707 7.92684 8.08326 8.25640 8.50057 9.12213 9.67759 11.17911 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.064820 B = 0.001961 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.861993 B =14271.571467 C =14366.980171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.512 3.488 14 O -0.533 6.533 15 N -0.739 5.739 16 C 0.126 3.874 17 C -0.056 4.056 18 C 0.051 3.949 19 N -0.470 5.470 20 C 0.039 3.961 21 C -0.260 4.260 22 S 0.130 5.870 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.401 0.599 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.177 0.823 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.825 -30.967 2.114 31.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.300 3.700 14 O -0.409 6.409 15 N -0.393 5.393 16 C 0.001 3.999 17 C -0.097 4.097 18 C -0.227 4.227 19 N -0.185 5.185 20 C -0.112 4.112 21 C -0.400 4.400 22 S 0.384 5.616 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.235 0.765 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.194 0.806 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.009 -30.469 2.666 31.170 hybrid contribution 0.495 0.171 -0.736 0.903 sum 6.504 -30.298 1.931 31.049 Atomic orbital electron populations 1.69987 1.06042 1.26373 1.51058 1.25052 0.94850 0.99254 0.95514 0.86553 0.80070 0.83932 0.77524 1.19787 1.21074 1.21072 1.21329 0.93021 0.91195 1.50203 0.92691 1.19107 0.94090 0.91301 0.97334 1.21649 0.99068 0.93998 1.00074 1.21456 0.97042 0.92715 1.02984 1.21795 1.00090 0.91837 1.04057 1.21129 0.88467 0.85487 0.74920 1.90721 1.14285 1.87630 1.48229 1.46027 1.10276 1.05424 1.77612 1.21202 0.93984 0.81506 1.03241 1.20431 0.97004 0.87037 1.05241 1.26788 1.03142 1.01517 0.91230 1.66276 1.13017 1.07632 1.31551 1.21849 0.99030 0.93818 0.96475 1.27157 1.10513 1.05701 0.96584 1.84145 1.50031 1.15004 1.12458 0.93116 0.96576 0.96576 0.93467 0.93466 0.91792 0.91808 0.89054 0.89050 0.76489 0.90810 0.91260 0.88758 0.87853 0.80563 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 13 C 0.51 7.03 7.83 -10.99 -0.09 6.94 16 14 O -0.53 -9.83 15.98 5.55 0.09 -9.74 16 15 N -0.74 -6.94 5.56 -60.29 -0.33 -7.27 16 16 C 0.13 1.16 5.66 -4.04 -0.02 1.14 16 17 C -0.06 -0.36 5.91 -27.89 -0.16 -0.52 16 18 C 0.05 0.42 6.64 -13.46 -0.09 0.33 16 19 N -0.47 -4.56 10.54 -11.86 -0.13 -4.69 16 20 C 0.04 0.30 11.35 -19.18 -0.22 0.08 16 21 C -0.26 -1.62 11.37 29.12 0.33 -1.29 16 22 S 0.13 0.86 23.18 -107.50 -2.49 -1.63 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 29 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.40 2.36 8.47 -40.82 -0.35 2.02 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -35.82 341.31 -9.02 -44.85 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.80 Total: -3.52 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.22 Total: -13.18 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.28 Total: -38.91 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.82 -9.02 -44.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154949.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.264 kcal (2) G-P(sol) polarization free energy of solvation -35.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds