Wall clock time and date at job start Tue Mar 31 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46507 * 109.45270 * 172.09138 * 3 2 1 5 5 C 1.34775 * 119.99523 * 300.23575 * 4 3 2 6 6 O 1.21282 * 120.00239 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99401 * 179.97438 * 5 4 3 8 8 C 1.53004 * 109.46670 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46855 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46855 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46670 * 180.02562 * 10 9 8 12 12 H 1.07991 * 120.00318 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99680 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00120 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99913 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47010 * 90.00296 * 15 13 11 17 17 H 1.48496 * 109.47049 * 210.00006 * 15 13 11 18 18 H 1.48490 * 109.47150 * 330.00301 * 15 13 11 19 19 C 1.52945 * 109.60489 * 292.32166 * 3 2 1 20 20 C 1.53704 * 112.37947 * 89.76029 * 19 3 2 21 21 S 1.83399 * 104.96916 * 2.89615 * 20 19 3 22 22 C 1.54999 * 109.65492 * 51.98897 * 3 2 1 23 23 H 0.97000 * 119.99886 * 120.22871 * 4 3 2 24 24 H 1.08998 * 109.47257 * 299.99381 * 7 5 4 25 25 H 1.09000 * 109.47493 * 60.00091 * 7 5 4 26 26 H 1.08998 * 109.47030 * 299.99832 * 8 7 5 27 27 H 1.09002 * 109.47248 * 60.00305 * 8 7 5 28 28 H 1.08998 * 109.47306 * 299.99837 * 9 8 7 29 29 H 1.09002 * 109.46801 * 60.00205 * 9 8 7 30 30 H 1.08998 * 109.47030 * 300.00006 * 10 9 8 31 31 H 1.08993 * 109.47133 * 59.99907 * 10 9 8 32 32 H 0.96995 * 120.00000 * 179.97438 * 14 13 11 33 33 H 1.09002 * 108.88828 * 329.03708 * 19 3 2 34 34 H 1.08999 * 108.88615 * 210.48389 * 19 3 2 35 35 H 1.09001 * 110.34070 * 121.77128 * 20 19 3 36 36 H 1.09002 * 110.34220 * 244.02379 * 20 19 3 37 37 H 1.08999 * 111.23002 * 163.68643 * 22 3 2 38 38 H 1.09001 * 111.14425 * 39.47158 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0952 1.3692 -0.1901 5 6 2.7651 2.0534 -1.3033 6 8 2.0650 1.5362 -2.1478 7 6 3.2659 3.4613 -1.4985 8 6 2.7511 4.0052 -2.8328 9 6 3.2590 5.4349 -3.0307 10 6 2.7448 5.9785 -4.3653 11 6 3.2456 7.3864 -4.5605 12 1 3.8686 7.8472 -3.8083 13 6 2.9092 8.0859 -5.7001 14 7 2.1509 7.5247 -6.6164 15 14 3.5293 9.8313 -5.9418 16 1 4.8360 9.7992 -6.6467 17 1 2.5485 10.5973 -6.7520 18 1 3.6965 10.4849 -4.6190 19 6 3.1214 -0.5463 1.3328 20 6 3.3128 -2.0711 1.3048 21 16 2.9045 -2.5684 -0.4126 22 6 3.1297 -0.8980 -1.1501 23 1 3.6553 1.7827 0.4853 24 1 2.9051 4.0913 -0.6855 25 1 4.3559 3.4621 -1.5025 26 1 3.1123 3.3751 -3.6456 27 1 1.6611 4.0045 -2.8292 28 1 2.8975 6.0647 -2.2179 29 1 4.3491 5.4360 -3.0341 30 1 3.1067 5.3486 -5.1779 31 1 1.6549 5.9773 -4.3624 32 1 1.9140 8.0169 -7.4179 33 1 2.4065 -0.2948 2.1163 34 1 4.0768 -0.0749 1.5631 35 1 4.3462 -2.3276 1.5380 36 1 2.6341 -2.5513 2.0098 37 1 4.1806 -0.6996 -1.3603 38 1 2.5228 -0.7797 -2.0478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588285218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:39 Heat of formation + Delta-G solvation = -25.597815 kcal Electronic energy + Delta-G solvation = -19134.543194 eV Core-core repulsion = 16102.685756 eV Total energy + Delta-G solvation = -3031.857438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63842 -37.99476 -35.74744 -34.95529 -33.42625 -32.62043 -30.37472 -29.32628 -26.44089 -25.32755 -22.86166 -22.54752 -20.54926 -20.04091 -18.48630 -17.78118 -16.67093 -16.21366 -16.11352 -15.55160 -15.37825 -14.55912 -14.47547 -14.17028 -14.05091 -13.73151 -13.39534 -12.96923 -12.73737 -12.62028 -12.49241 -12.32378 -12.06617 -11.84549 -11.75585 -11.63823 -11.01404 -10.69831 -10.59895 -10.53616 -10.46225 -10.02711 -9.79528 -9.64214 -9.26837 -9.01339 -8.32155 -8.19440 -5.96766 -3.99567 1.19396 1.65801 2.13515 2.40705 2.49275 3.00076 3.32815 3.32931 3.39080 3.41960 3.78937 3.98317 4.19109 4.30867 4.47469 4.71010 4.86515 4.98659 5.03876 5.07158 5.18705 5.24595 5.34047 5.38648 5.70871 5.81137 6.06276 6.22057 6.47638 6.77842 6.94477 7.02374 7.16926 7.26149 7.71925 7.87257 7.91945 8.04278 8.45636 9.08213 9.64276 11.14563 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043183 B = 0.002590 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.247096 B =10809.314537 C =10885.383925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.203 3.797 3 C 0.279 3.721 4 N -0.727 5.727 5 C 0.513 3.487 6 O -0.516 6.516 7 C -0.135 4.135 8 C -0.105 4.105 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.130 4.130 20 C -0.072 4.072 21 S -0.272 6.272 22 C -0.070 4.070 23 H 0.411 0.589 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.364 -18.437 20.010 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.118 4.118 3 C 0.187 3.813 4 N -0.385 5.385 5 C 0.301 3.699 6 O -0.389 6.389 7 C -0.175 4.175 8 C -0.143 4.143 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.170 4.170 20 C -0.221 4.221 21 S -0.046 6.046 22 C -0.220 4.220 23 H 0.248 0.752 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.733 -19.833 18.722 27.681 hybrid contribution 1.288 2.260 0.563 2.661 sum 6.021 -17.573 19.285 26.776 Atomic orbital electron populations 1.81167 1.12340 1.06194 1.07141 1.28678 0.94483 0.94510 0.94145 1.18343 0.82119 0.85097 0.95773 1.46343 1.54953 1.13148 1.24011 1.21402 0.79414 0.88806 0.80256 1.90751 1.36043 1.69891 1.42213 1.21818 1.02705 0.90690 1.02302 1.21489 1.01303 0.97856 0.93661 1.21648 0.99528 0.92701 1.00874 1.19094 0.96460 0.95389 0.90800 1.21271 1.31239 0.99235 1.04194 0.92745 1.25046 0.95248 0.98149 0.96129 1.69971 1.36793 1.37344 1.09324 0.86610 0.78565 0.84808 0.78100 1.20685 1.21250 1.19922 1.22152 1.04312 0.95427 0.95075 1.23899 1.06194 0.95863 0.96097 1.88264 1.91788 1.16834 1.07664 1.24861 1.06333 0.90233 1.00553 0.75160 0.88774 0.88530 0.91594 0.91780 0.93443 0.93368 0.96578 0.96614 0.93010 0.88456 0.87829 0.87792 0.87477 0.86663 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.95 18.54 42.15 0.78 -5.17 16 2 C 0.20 2.45 12.05 -20.76 -0.25 2.20 16 3 C 0.28 2.17 0.78 -133.58 -0.10 2.07 16 4 N -0.73 -5.16 5.07 -49.25 -0.25 -5.41 16 5 C 0.51 5.89 7.25 -10.98 -0.08 5.81 16 6 O -0.52 -8.23 13.62 5.56 0.08 -8.16 16 7 C -0.14 -1.51 5.70 -27.88 -0.16 -1.67 16 8 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 9 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 15 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C -0.13 -0.49 5.43 -26.39 -0.14 -0.63 16 20 C -0.07 -0.31 7.38 37.52 0.28 -0.03 16 21 S -0.27 -2.34 22.81 -107.50 -2.45 -4.79 16 22 C -0.07 -0.60 5.70 38.21 0.22 -0.38 16 23 H 0.41 1.29 8.24 -40.82 -0.34 0.96 16 24 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 27 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.10 0.32 7.81 -51.93 -0.41 -0.09 16 34 H 0.10 0.08 7.74 -51.93 -0.40 -0.32 16 35 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.13 1.49 7.05 -51.93 -0.37 1.12 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -36.22 334.03 -7.84 -44.06 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -5.70 Total: -5.53 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 1.27 Total: -37.28 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -2.45 Total: -4.79 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.22 -7.84 -44.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588285218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.467 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds