Wall clock time and date at job start Tue Mar 31 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47171 * 90.00217 * 7 6 5 9 9 C 1.42902 * 114.00186 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47230 * 179.97438 * 9 8 7 11 11 S 1.81396 * 109.47208 * 179.97438 * 10 9 8 12 12 C 1.81402 * 103.00025 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47006 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99788 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99938 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00039 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00002 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47242 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47369 * 120.00072 * 17 15 13 20 20 H 1.48507 * 109.47048 * 239.99954 * 17 15 13 21 21 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 22 22 C 1.38141 * 120.05541 * 359.45293 * 21 6 5 23 23 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 24 24 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 25 25 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 27 27 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 29 29 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 30 30 H 1.09001 * 109.46918 * 299.99649 * 9 8 7 31 31 H 1.08999 * 109.46857 * 59.99535 * 9 8 7 32 32 H 1.08998 * 109.47349 * 300.00228 * 10 9 8 33 33 H 1.09000 * 109.46950 * 59.99785 * 10 9 8 34 34 H 1.09000 * 109.47071 * 299.99951 * 12 11 10 35 35 H 1.09000 * 109.47212 * 60.00220 * 12 11 10 36 36 H 0.96996 * 120.00133 * 180.02562 * 16 15 13 37 37 H 1.07999 * 119.97019 * 179.70188 * 21 6 5 38 38 H 1.07998 * 120.03323 * 180.24999 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 8 4.2018 5.4444 -1.3441 9 6 4.8490 6.7135 -1.4559 10 6 5.0279 7.0664 -2.9338 11 16 5.8488 8.6778 -3.0757 12 6 5.9706 8.9171 -4.8697 13 6 6.6416 10.2358 -5.1561 14 1 6.9630 10.8665 -4.3405 15 6 6.8461 10.6365 -6.4594 16 7 6.4551 9.8682 -7.4526 17 14 7.6785 12.2707 -6.8144 18 1 8.0189 12.9413 -5.5339 19 1 8.9193 12.0348 -7.5954 20 1 6.7583 13.1353 -7.5961 21 6 1.9211 3.6047 0.0080 22 6 1.2915 2.3751 0.0013 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 4.0209 0.3799 -0.0005 27 1 5.1345 2.5749 -0.0008 28 1 4.9444 4.9376 0.5161 29 1 3.3584 5.7457 0.5177 30 1 4.2394 7.4761 -0.9711 31 1 5.8251 6.6674 -0.9729 32 1 5.6376 6.3037 -3.4182 33 1 4.0520 7.1124 -3.4171 34 1 6.5573 8.1083 -5.3052 35 1 4.9713 8.9163 -5.3050 36 1 6.5993 10.1500 -8.3695 37 1 1.3343 4.5113 0.0141 38 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591133931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:39 Heat of formation + Delta-G solvation = -71.714906 kcal Electronic energy + Delta-G solvation = -18153.561559 eV Core-core repulsion = 15087.411583 eV Total energy + Delta-G solvation = -3066.149976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.42807 -38.48174 -37.19972 -33.14904 -32.14251 -31.34940 -30.28103 -28.53481 -27.91932 -25.47058 -23.49620 -22.92686 -22.26740 -21.42644 -18.47362 -16.82596 -16.71391 -16.46135 -16.06586 -15.98937 -15.76724 -15.13923 -14.72307 -14.32831 -14.21197 -13.81432 -13.55914 -13.27956 -12.95522 -12.50299 -12.38397 -12.29298 -12.18894 -11.62044 -11.51548 -11.38686 -11.09506 -11.04386 -10.88380 -10.66840 -9.99852 -9.59179 -9.56057 -9.25322 -8.89462 -8.62141 -8.44017 -6.72196 -6.19455 -4.23827 1.05998 1.10668 2.45644 2.93501 3.25324 3.32347 3.38037 3.41201 3.84342 4.12877 4.35843 4.47091 4.58326 4.72253 4.77253 4.77677 4.99105 5.07172 5.09743 5.17660 5.19895 5.22065 5.32394 5.39090 5.44878 5.62838 5.77034 5.97312 6.02173 6.06844 6.16016 6.38430 6.46763 7.06439 7.09637 7.11992 7.19662 7.75171 8.00402 8.78250 9.39187 10.91929 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042219 B = 0.002172 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.045765 B =12889.488045 C =13175.049632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.155 4.155 5 C -0.058 4.058 6 C -0.124 4.124 7 C 0.107 3.893 8 O -0.383 6.383 9 C 0.084 3.916 10 C -0.091 4.091 11 S -0.302 6.302 12 C 0.095 3.905 13 C -0.512 4.512 14 H 0.068 0.932 15 C 0.064 3.936 16 N -0.892 5.892 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.058 4.058 22 C -0.211 4.211 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.265 0.735 37 H 0.127 0.873 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -17.604 16.995 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.174 4.174 5 C -0.076 4.076 6 C -0.124 4.124 7 C 0.030 3.970 8 O -0.303 6.303 9 C 0.006 3.994 10 C -0.239 4.239 11 S -0.076 6.076 12 C -0.052 4.052 13 C -0.552 4.552 14 H 0.087 0.913 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.076 4.076 22 C -0.230 4.230 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.422 -17.264 17.454 26.670 hybrid contribution -0.252 0.259 -1.179 1.233 sum -10.674 -17.005 16.275 25.845 Atomic orbital electron populations 1.23068 0.78319 1.03962 1.01479 1.86067 1.21475 1.27029 1.88659 1.19085 0.92433 0.84123 0.95980 1.20420 0.91353 0.98668 1.06911 1.20908 1.00078 0.90838 0.95782 1.19555 0.93567 0.94340 1.04962 1.21207 0.98732 0.92306 0.84708 1.87966 1.80208 1.36723 1.25383 1.22169 0.96768 0.84554 0.95870 1.23079 1.03683 0.99222 0.97930 1.86479 1.78508 1.22415 1.20214 1.21067 1.00442 1.00928 0.82778 1.20721 1.39376 1.02620 0.92438 0.91342 1.24980 0.95506 0.97876 0.95619 1.69968 1.46478 1.37352 0.99259 0.86275 0.79022 0.82714 0.78512 1.19402 1.20724 1.20737 1.20874 0.93872 0.97222 0.95610 1.21213 1.00066 0.92250 1.09483 0.92620 0.92501 0.88221 0.85037 0.85030 0.92426 0.92520 0.92546 0.92510 0.90163 0.90204 0.94453 0.94469 0.92523 0.85511 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.06 10.50 -19.42 -0.20 -3.27 16 3 C 0.13 1.33 6.69 -39.21 -0.26 1.07 16 4 C -0.15 -1.58 9.99 -39.43 -0.39 -1.97 16 5 C -0.06 -0.60 9.69 -39.61 -0.38 -0.98 16 6 C -0.12 -1.36 5.51 -104.60 -0.58 -1.94 16 7 C 0.11 1.19 6.06 36.01 0.22 1.41 16 8 O -0.38 -5.56 10.33 -35.23 -0.36 -5.92 16 9 C 0.08 1.24 5.95 37.16 0.22 1.46 16 10 C -0.09 -1.63 6.31 37.16 0.23 -1.40 16 11 S -0.30 -6.64 21.66 -107.50 -2.33 -8.97 16 12 C 0.09 2.50 5.70 36.01 0.21 2.70 16 13 C -0.51 -14.57 9.13 -34.44 -0.31 -14.88 16 14 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 15 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 17 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.06 -0.59 9.69 -39.60 -0.38 -0.97 16 22 C -0.21 -2.01 9.04 -39.43 -0.36 -2.37 16 23 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 24 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 25 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 34 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -31.38 340.63 -8.68 -40.05 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.73 Total: -3.02 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -0.90 Total: -15.01 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.74 Total: -25.44 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.57 Total: -9.18 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -6.64 SS G_CDS: -2.33 Total: -8.97 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.38 -8.68 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.661 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds