Wall clock time and date at job start Tue Mar 31 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47171 * 90.00217 * 7 6 5 9 9 C 1.42902 * 114.00186 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47230 * 179.97438 * 9 8 7 11 11 S 1.81396 * 109.47208 * 179.97438 * 10 9 8 12 12 C 1.81402 * 103.00025 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47006 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99788 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99938 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00039 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00002 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47242 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47369 * 120.00072 * 17 15 13 20 20 H 1.48507 * 109.47048 * 239.99954 * 17 15 13 21 21 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 22 22 C 1.38141 * 120.05541 * 359.45293 * 21 6 5 23 23 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 24 24 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 25 25 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 27 27 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 29 29 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 30 30 H 1.09001 * 109.46918 * 299.99649 * 9 8 7 31 31 H 1.08999 * 109.46857 * 59.99535 * 9 8 7 32 32 H 1.08998 * 109.47349 * 300.00228 * 10 9 8 33 33 H 1.09000 * 109.46950 * 59.99785 * 10 9 8 34 34 H 1.09000 * 109.47071 * 299.99951 * 12 11 10 35 35 H 1.09000 * 109.47212 * 60.00220 * 12 11 10 36 36 H 0.96996 * 120.00133 * 180.02562 * 16 15 13 37 37 H 1.07999 * 119.97019 * 179.70188 * 21 6 5 38 38 H 1.07998 * 120.03323 * 180.24999 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 8 4.2018 5.4444 -1.3441 9 6 4.8490 6.7135 -1.4559 10 6 5.0279 7.0664 -2.9338 11 16 5.8488 8.6778 -3.0757 12 6 5.9706 8.9171 -4.8697 13 6 6.6416 10.2358 -5.1561 14 1 6.9630 10.8665 -4.3405 15 6 6.8461 10.6365 -6.4594 16 7 6.4551 9.8682 -7.4526 17 14 7.6785 12.2707 -6.8144 18 1 8.0189 12.9413 -5.5339 19 1 8.9193 12.0348 -7.5954 20 1 6.7583 13.1353 -7.5961 21 6 1.9211 3.6047 0.0080 22 6 1.2915 2.3751 0.0013 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 4.0209 0.3799 -0.0005 27 1 5.1345 2.5749 -0.0008 28 1 4.9444 4.9376 0.5161 29 1 3.3584 5.7457 0.5177 30 1 4.2394 7.4761 -0.9711 31 1 5.8251 6.6674 -0.9729 32 1 5.6376 6.3037 -3.4182 33 1 4.0520 7.1124 -3.4171 34 1 6.5573 8.1083 -5.3052 35 1 4.9713 8.9163 -5.3050 36 1 6.5993 10.1500 -8.3695 37 1 1.3343 4.5113 0.0141 38 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591133931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:39 Heat of formation + Delta-G solvation = -89.304238 kcal Electronic energy + Delta-G solvation = -18154.324290 eV Core-core repulsion = 15087.411583 eV Total energy + Delta-G solvation = -3066.912707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.12938 -39.37032 -38.06956 -35.30682 -33.15809 -32.09262 -31.32937 -30.69171 -28.47804 -26.28664 -25.42873 -23.75992 -23.64700 -22.18247 -19.14646 -18.66480 -17.87812 -17.53389 -17.13135 -16.83331 -16.68929 -16.65710 -16.12735 -15.48801 -15.16595 -14.67607 -14.58374 -14.56803 -14.39753 -14.10592 -13.95287 -13.59970 -12.89376 -12.80196 -12.75344 -12.51013 -12.49415 -12.33035 -11.96904 -11.87180 -11.75498 -11.54501 -10.78024 -10.76395 -10.62991 -9.99489 -9.18889 -8.53114 -8.34358 -6.48148 0.27059 0.36118 0.83756 1.41038 1.41074 1.56149 1.94599 2.34507 2.36636 2.56631 3.00349 3.15067 3.78485 3.81667 3.88290 3.92575 4.14715 4.17244 4.33844 4.37875 4.38459 4.39369 4.51120 4.59812 4.69628 4.72914 4.74751 4.76428 4.91304 4.92771 5.05365 5.23524 5.33152 5.56264 5.61764 5.75520 5.85854 6.16281 6.40370 6.59836 7.20239 8.78113 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042219 B = 0.002172 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.045765 B =12889.488045 C =13175.049632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.119 3.881 4 C -0.168 4.168 5 C -0.065 4.065 6 C -0.142 4.142 7 C 0.104 3.896 8 O -0.400 6.400 9 C 0.094 3.906 10 C -0.082 4.082 11 S -0.292 6.292 12 C 0.092 3.908 13 C -0.536 4.536 14 H 0.066 0.934 15 C 0.012 3.988 16 N -0.926 5.926 17 Si 0.981 3.019 18 H -0.263 1.263 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.066 4.066 22 C -0.215 4.215 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.271 0.729 37 H 0.139 0.861 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.106 -17.416 18.103 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.074 3.926 4 C -0.187 4.187 5 C -0.083 4.083 6 C -0.143 4.143 7 C 0.028 3.972 8 O -0.321 6.321 9 C 0.017 3.983 10 C -0.231 4.231 11 S -0.066 6.066 12 C -0.055 4.055 13 C -0.575 4.575 14 H 0.084 0.916 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.804 3.196 18 H -0.187 1.187 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.084 4.084 22 C -0.233 4.233 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.159 0.841 27 H 0.161 0.839 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.157 0.843 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.769 -17.087 18.580 27.444 hybrid contribution -0.251 0.036 -1.463 1.485 sum -11.020 -17.051 17.116 26.555 Atomic orbital electron populations 1.23354 0.76427 1.05636 1.02267 1.86048 1.23520 1.26822 1.88533 1.19300 0.92765 0.84739 0.95831 1.20645 0.91815 0.99114 1.07114 1.21104 1.00792 0.90809 0.95589 1.19695 0.94110 0.94436 1.06034 1.21405 0.99908 0.92696 0.83177 1.87926 1.80218 1.36183 1.27783 1.21973 0.97757 0.85378 0.93241 1.23108 1.02835 0.96462 1.00681 1.86193 1.79262 1.25482 1.15681 1.20777 0.98545 0.99802 0.86373 1.21030 1.40091 1.03458 0.92929 0.91629 1.25972 0.95838 1.01796 0.95284 1.70075 1.47267 1.39321 0.99839 0.85162 0.78088 0.77817 0.78558 1.18706 1.19799 1.19800 1.21116 0.93884 0.98043 0.95376 1.21460 1.01211 0.91779 1.08868 0.91474 0.91997 0.86252 0.84127 0.83916 0.90993 0.91016 0.91468 0.91478 0.90414 0.90412 0.96659 0.96651 0.92034 0.84278 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.10 10.50 -92.39 -0.97 -7.06 16 3 C 0.12 2.36 6.69 22.51 0.15 2.51 16 4 C -0.17 -3.32 9.99 22.37 0.22 -3.10 16 5 C -0.06 -1.28 9.69 22.25 0.22 -1.07 16 6 C -0.14 -2.96 5.51 -19.85 -0.11 -3.07 16 7 C 0.10 2.12 6.06 71.24 0.43 2.55 16 8 O -0.40 -10.99 10.33 -148.98 -1.54 -12.53 16 9 C 0.09 2.62 5.95 71.98 0.43 3.05 16 10 C -0.08 -2.91 6.31 71.98 0.45 -2.45 16 11 S -0.29 -12.80 21.66 -56.49 -1.22 -14.02 16 12 C 0.09 5.02 5.70 71.24 0.41 5.43 16 13 C -0.54 -30.91 9.13 25.60 0.23 -30.68 16 14 H 0.07 3.73 7.71 -2.91 -0.02 3.71 16 15 C 0.01 0.67 5.46 84.65 0.46 1.13 16 16 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 17 Si 0.98 43.78 29.54 68.60 2.03 45.80 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 C -0.07 -1.26 9.69 22.25 0.22 -1.04 16 22 C -0.21 -3.80 9.04 22.37 0.20 -3.60 16 23 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 24 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 25 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 27 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.07 1.24 8.08 -2.39 -0.02 1.23 16 29 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.15 1.87 6.30 -2.91 -0.02 1.85 16 Total: -1.00 -67.08 340.63 4.03 -63.05 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.03 Total: 8.56 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 4.43 Total: -29.07 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.28 Total: -54.73 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -2.51 Total: -19.59 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -12.80 SS G_CDS: -1.22 Total: -14.02 kcal Total: -67.08 4.03 -63.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.257 kcal (2) G-P(sol) polarization free energy of solvation -67.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds