Wall clock time and date at job start Tue Mar 31 2020 05:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42108 * 109.46797 * 63.60985 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.40057 * 125.87561 * 269.72390 * 14 13 11 16 16 C 1.34752 * 107.79453 * 179.80523 * 15 14 13 17 17 N 1.35295 * 107.91586 * 0.46590 * 16 15 14 18 18 N 1.31026 * 125.86765 * 90.02349 * 14 13 11 19 19 C 1.46579 * 124.54738 * 179.66852 * 17 16 15 20 20 C 1.53247 * 108.80047 * 342.72621 * 19 17 16 21 21 C 1.53156 * 109.55985 * 50.55033 * 20 19 17 22 22 C 1.50872 * 127.76114 * 180.21873 * 16 15 14 23 23 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 29 29 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 30 30 H 1.08000 * 126.09963 * 359.93930 * 15 14 13 31 31 H 1.09007 * 109.58524 * 102.53619 * 19 17 16 32 32 H 1.09003 * 109.58274 * 222.94493 * 19 17 16 33 33 H 1.08997 * 109.46221 * 290.51862 * 20 19 17 34 34 H 1.09004 * 109.45486 * 170.57114 * 20 19 17 35 35 H 1.09004 * 109.51312 * 170.64985 * 21 20 19 36 36 H 1.09004 * 109.52017 * 50.47778 * 21 20 19 37 37 H 1.09001 * 109.72369 * 284.13251 * 22 16 15 38 38 H 1.09000 * 109.72327 * 44.79643 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 16 5.8355 -2.6366 -0.0014 12 8 6.3101 -2.0406 1.1982 13 6 6.2436 -4.4040 -0.0003 14 6 7.7410 -4.5739 -0.0020 15 6 8.5545 -4.6730 -1.1378 16 6 9.8285 -4.8107 -0.7210 17 7 9.8262 -4.8102 0.6319 18 7 8.5051 -4.6599 1.0589 19 6 11.0244 -4.9467 1.4652 20 6 12.1617 -5.5100 0.6064 21 6 12.2896 -4.6871 -0.6789 22 6 11.0682 -4.9500 -1.5696 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.6796 0.8894 25 1 3.8746 -0.6807 -0.8905 26 1 3.6585 -3.1502 0.8903 27 1 3.6578 -3.1505 -0.8897 28 1 5.8253 -4.8730 0.8904 29 1 5.8239 -4.8744 -0.8896 30 1 8.2205 -4.6421 -2.1643 31 1 11.3107 -3.9703 1.8562 32 1 10.8191 -5.6274 2.2915 33 1 11.9457 -6.5479 0.3531 34 1 13.0969 -5.4598 1.1642 35 1 13.1964 -4.9784 -1.2091 36 1 12.3371 -3.6271 -0.4295 37 1 11.1220 -5.9586 -1.9794 38 1 11.0418 -4.2233 -2.3815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593208128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:37 Heat of formation + Delta-G solvation = 22.513366 kcal Electronic energy + Delta-G solvation = -19215.986812 eV Core-core repulsion = 16186.215632 eV Total energy + Delta-G solvation = -3029.771180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.59138 -36.93113 -35.14139 -33.64763 -32.87976 -31.69739 -31.19231 -28.83073 -27.46109 -25.53196 -24.26761 -22.29451 -21.01033 -20.10433 -18.95878 -17.20641 -16.76553 -16.68471 -16.04120 -15.00495 -14.81612 -14.64204 -14.53845 -14.25406 -14.03867 -13.86422 -13.67898 -13.39995 -12.96639 -12.60942 -12.52484 -12.06439 -11.82028 -11.54886 -11.48216 -11.44569 -11.24732 -11.00508 -10.60276 -10.48414 -10.21683 -9.92126 -9.65147 -9.30212 -8.84280 -8.54780 -8.50935 -7.68385 -6.05172 -4.04236 1.62407 1.99662 2.37849 2.91942 3.16936 3.32150 3.40488 3.47446 4.04442 4.18278 4.24239 4.29878 4.38247 4.46045 4.68948 4.85665 4.94793 5.05961 5.20648 5.23267 5.28231 5.30436 5.39639 5.42733 5.58099 5.69181 5.75518 5.78630 5.91113 6.03589 6.11536 6.62770 6.66505 6.94996 7.11064 7.25551 7.73025 7.75438 8.51639 8.98239 9.56182 11.07853 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041692 B = 0.003145 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.423802 B = 8899.493256 C = 9025.326136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.004 3.996 10 C -0.412 4.412 11 S 1.228 4.772 12 O -0.842 6.842 13 C -0.375 4.375 14 C 0.098 3.902 15 C -0.262 4.262 16 C 0.079 3.921 17 N -0.371 5.371 18 N -0.284 5.284 19 C 0.132 3.868 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.058 4.058 23 H 0.264 0.736 24 H 0.022 0.978 25 H 0.023 0.977 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.502 -12.171 -6.689 29.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.556 4.556 8 H 0.092 0.908 9 C -0.035 4.035 10 C -0.552 4.552 11 S 1.427 4.573 12 O -0.837 6.837 13 C -0.511 4.511 14 C -0.068 4.068 15 C -0.292 4.292 16 C -0.048 4.048 17 N -0.154 5.154 18 N -0.107 5.107 19 C 0.011 3.989 20 C -0.173 4.173 21 C -0.165 4.165 22 C -0.096 4.096 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.130 0.870 28 H 0.115 0.885 29 H 0.151 0.849 30 H 0.172 0.828 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 27.165 -11.335 -5.259 29.901 hybrid contribution -0.716 -0.261 1.104 1.342 sum 26.449 -11.596 -4.155 29.177 Atomic orbital electron populations 1.69903 1.06271 1.27000 1.50884 1.25013 0.94771 0.99179 0.94430 0.86860 0.80714 0.83620 0.78815 1.19788 1.21186 1.18721 1.21043 0.88764 0.94604 1.51194 0.90829 1.19239 0.98098 0.89089 0.97087 1.27481 1.14851 1.05957 1.06868 1.70561 0.89636 0.84363 1.12776 1.93110 1.74663 1.65080 1.50813 1.26255 0.92674 1.23846 1.08283 1.21377 0.94394 1.00104 0.90966 1.20964 0.90995 1.17428 0.99832 1.21023 0.96856 1.01958 0.84927 1.48598 1.05710 1.56820 1.04315 1.77394 0.86512 1.24328 1.22478 1.21760 0.81031 1.02661 0.93467 1.21949 0.97918 1.00562 0.96915 1.21688 0.98255 1.00902 0.95698 1.20447 0.89011 1.03524 0.96666 0.92630 0.95990 0.95839 0.90290 0.86965 0.88509 0.84876 0.82786 0.89944 0.89186 0.90657 0.89112 0.90228 0.91021 0.89433 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 8 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 9 C 0.00 0.09 4.05 -27.88 -0.11 -0.02 16 10 C -0.41 -7.92 5.86 37.16 0.22 -7.71 16 11 S 1.23 20.12 13.14 -107.50 -1.41 18.71 16 12 O -0.84 -19.50 18.14 -35.23 -0.64 -20.14 16 13 C -0.38 -5.21 6.48 36.01 0.23 -4.98 16 14 C 0.10 1.48 6.48 -82.25 -0.53 0.95 16 15 C -0.26 -3.13 10.69 -40.14 -0.43 -3.56 16 16 C 0.08 0.87 6.59 -82.22 -0.54 0.33 16 17 N -0.37 -4.85 4.04 -56.95 -0.23 -5.08 16 18 N -0.28 -4.86 12.62 33.74 0.43 -4.44 16 19 C 0.13 1.18 7.28 -3.87 -0.03 1.15 16 20 C -0.14 -0.73 5.93 -26.52 -0.16 -0.89 16 21 C -0.13 -0.66 5.97 -26.43 -0.16 -0.82 16 22 C -0.06 -0.37 6.29 -27.58 -0.17 -0.54 16 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 25 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 26 H 0.08 1.62 8.14 -51.92 -0.42 1.19 16 27 H 0.11 1.82 8.14 -51.92 -0.42 1.40 16 28 H 0.10 1.47 8.14 -51.92 -0.42 1.05 16 29 H 0.13 1.31 8.14 -51.92 -0.42 0.88 16 30 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 34 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -40.38 327.65 -8.77 -49.15 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.85 Total: -3.76 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -2.11 Total: -29.45 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.97 Total: -36.80 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.64 Total: -20.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Atomic # 16 Polarization: 20.12 SS G_CDS: -1.41 Total: 18.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -40.38 -8.77 -49.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593208128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.667 kcal (2) G-P(sol) polarization free energy of solvation -40.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds