Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 115.55022 * 2 1 4 4 C 1.52995 * 117.49991 * 145.67344 * 2 1 3 5 5 C 1.50705 * 117.49864 * 214.97953 * 4 2 1 6 6 N 1.29946 * 126.28448 * 293.30352 * 5 4 2 7 7 O 1.21302 * 110.25038 * 179.68281 * 6 5 4 8 8 C 1.33649 * 109.80857 * 0.47097 * 7 6 5 9 9 C 1.50704 * 126.54879 * 179.80325 * 8 7 6 10 10 S 1.81007 * 109.46741 * 269.68185 * 9 8 7 11 11 C 1.76202 * 99.99742 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99924 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99772 * 179.72481 * 11 10 9 14 14 N 1.31636 * 119.99624 * 180.02562 * 13 11 10 15 15 Si 1.86791 * 120.00203 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47358 * 89.99735 * 15 13 11 17 17 H 1.48504 * 109.47383 * 210.00120 * 15 13 11 18 18 H 1.48501 * 109.47082 * 329.99640 * 15 13 11 19 19 N 1.31127 * 106.89411 * 359.53657 * 8 7 6 20 20 C 1.52999 * 60.03484 * 107.48011 * 4 2 1 21 21 C 1.52990 * 117.50394 * 107.49899 * 20 4 2 22 22 C 1.53001 * 117.49476 * 252.52637 * 20 4 2 23 23 H 1.08997 * 109.46573 * 325.71773 * 1 2 3 24 24 H 1.08993 * 109.47063 * 85.71660 * 1 2 3 25 25 H 1.08998 * 109.46706 * 205.71809 * 1 2 3 26 26 H 1.08997 * 109.47392 * 154.27896 * 3 2 1 27 27 H 1.08996 * 109.47270 * 274.28029 * 3 2 1 28 28 H 1.09002 * 109.46796 * 34.28253 * 3 2 1 29 29 H 1.08995 * 117.50093 * 359.97438 * 4 2 1 30 30 H 1.09004 * 109.46987 * 149.68588 * 9 8 7 31 31 H 1.08999 * 109.47412 * 29.68253 * 9 8 7 32 32 H 0.97002 * 119.99610 * 180.02562 * 14 13 11 33 33 H 1.09009 * 109.47175 * 64.06799 * 21 20 4 34 34 H 1.09000 * 109.47775 * 184.06681 * 21 20 4 35 35 H 1.09000 * 109.47531 * 304.07509 * 21 20 4 36 36 H 1.09001 * 109.47202 * 8.60651 * 22 20 4 37 37 H 1.09001 * 109.47268 * 128.60467 * 22 20 4 38 38 H 1.09000 * 109.46970 * 248.60598 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 3.5294 -0.7806 1.4610 6 7 4.6476 -0.4504 0.8874 7 8 5.4994 -0.2314 1.7228 8 6 4.9926 -0.4163 2.9456 9 6 5.7224 -0.2518 4.2538 10 16 6.4741 -1.8288 4.7277 11 6 7.2370 -1.3602 6.2453 12 1 7.1474 -0.3454 6.6040 13 6 7.9477 -2.2968 6.9829 14 7 8.5173 -1.9468 8.1169 15 14 8.0961 -4.0538 6.3664 16 1 9.3035 -4.1780 5.5110 17 1 8.2127 -4.9765 7.5242 18 1 6.8899 -4.4039 5.5741 19 7 3.7376 -0.7627 2.7896 20 6 2.2368 -1.1221 -0.7647 21 6 3.5494 -0.7779 -1.4713 22 6 1.3589 -2.1576 -1.4703 23 1 -0.3632 0.8491 0.5789 24 1 -0.3633 0.0768 -1.0247 25 1 -0.3633 -0.9259 0.4459 26 1 3.1819 1.3090 0.4460 27 1 2.2775 1.7413 -1.0247 28 1 1.5805 2.0744 0.5789 29 1 1.6113 -1.8578 1.2691 30 1 5.0190 0.0618 5.0253 31 1 6.5008 0.5030 4.1433 32 1 9.0143 -2.6013 8.6322 33 1 4.2966 -1.5371 -1.2397 34 1 3.3851 -0.7467 -2.5484 35 1 3.9020 0.1951 -1.1292 36 1 0.7295 -2.6609 -0.7364 37 1 0.7296 -1.6587 -2.2074 38 1 1.9921 -2.8908 -1.9699 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599195462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = 65.045099 kcal Electronic energy + Delta-G solvation = -19777.117695 eV Core-core repulsion = 16749.190829 eV Total energy + Delta-G solvation = -3027.926866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.65744 -40.73792 -36.80377 -34.71003 -34.45077 -32.16714 -30.33760 -29.41921 -29.10763 -27.89612 -27.17903 -25.08880 -23.90958 -20.98110 -19.79058 -19.30828 -18.72798 -18.35157 -17.16574 -16.42397 -16.31003 -15.94258 -15.83359 -15.23490 -14.92761 -14.78730 -14.40015 -13.78247 -13.61399 -13.49480 -13.32917 -13.22554 -13.20975 -13.10142 -13.03526 -12.89145 -12.76229 -12.73008 -12.57382 -12.12690 -11.95855 -11.70246 -11.29013 -11.19608 -10.72240 -10.49795 -10.31960 -9.10885 -8.53439 -6.28531 -0.17661 0.83381 1.23327 1.31042 1.45306 1.55893 1.76285 2.21176 2.37406 2.54447 2.61118 2.85053 3.01180 3.49831 3.55726 3.66303 3.98592 4.06515 4.11937 4.19117 4.43718 4.49020 4.64673 4.68020 4.71381 4.75558 4.87077 4.87227 4.94124 4.95969 4.98658 5.06500 5.10657 5.15211 5.26885 5.37231 5.50473 5.69260 6.12004 6.89779 7.06826 8.58834 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033716 B = 0.003675 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.265226 B = 7616.361892 C = 7828.039478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.121 4.121 4 C -0.095 4.095 5 C 0.207 3.793 6 N -0.383 5.383 7 O 0.065 5.935 8 C 0.214 3.786 9 C 0.004 3.996 10 S -0.178 6.178 11 C -0.521 4.521 12 H 0.070 0.930 13 C 0.049 3.951 14 N -0.913 5.913 15 Si 0.912 3.088 16 H -0.260 1.260 17 H -0.260 1.260 18 H -0.235 1.235 19 N -0.491 5.491 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.111 4.111 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.279 0.721 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.575 2.929 -19.787 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.178 4.178 4 C -0.114 4.114 5 C -0.065 4.065 6 N -0.095 5.095 7 O 0.011 5.989 8 C -0.007 4.007 9 C -0.145 4.145 10 S 0.048 5.952 11 C -0.669 4.669 12 H 0.088 0.912 13 C -0.157 4.157 14 N -0.550 5.550 15 Si 0.734 3.266 16 H -0.185 1.185 17 H -0.184 1.184 18 H -0.159 1.159 19 N -0.226 5.226 20 C -0.092 4.092 21 C -0.172 4.172 22 C -0.168 4.168 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.758 1.833 -20.855 26.203 hybrid contribution 0.957 0.577 1.517 1.884 sum -14.801 2.410 -19.338 24.471 Atomic orbital electron populations 1.21384 0.88998 1.02936 1.03397 1.21978 0.96384 0.90296 1.00224 1.21437 0.99193 0.94418 1.02781 1.20964 0.90803 1.05305 0.94353 1.25206 0.96157 0.98800 0.86324 1.74776 0.99753 1.21151 1.13844 1.85318 1.36303 1.63623 1.13652 1.27915 0.88605 0.94283 0.89851 1.21575 1.02134 1.01923 0.88883 1.84410 1.67487 1.14117 1.29185 1.22247 1.38187 1.00449 1.06014 0.91164 1.25534 0.93346 1.02826 0.94023 1.70005 1.33530 1.37159 1.14338 0.85903 0.81231 0.79762 0.79693 1.18452 1.18415 1.15888 1.71891 1.13821 1.20520 1.16389 1.21997 0.98524 0.99584 0.89095 1.21419 0.93917 1.01628 1.00197 1.21374 0.98439 0.96593 1.00410 0.91562 0.89844 0.91422 0.94888 0.90339 0.91249 0.84715 0.85766 0.85465 0.91187 0.93700 0.90462 0.92280 0.91459 0.89766 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 8.88 71.98 0.64 -0.78 16 2 C -0.09 -1.63 2.70 -52.15 -0.14 -1.77 16 3 C -0.12 -2.43 8.21 71.98 0.59 -1.84 16 4 C -0.09 -2.30 5.62 -11.54 -0.06 -2.36 16 5 C 0.21 6.57 6.27 138.47 0.87 7.44 16 6 N -0.38 -12.51 7.77 -60.31 -0.47 -12.97 16 7 O 0.07 2.26 11.31 74.78 0.85 3.11 16 8 C 0.21 7.63 7.77 88.38 0.69 8.31 16 9 C 0.00 0.13 6.30 71.24 0.45 0.58 16 10 S -0.18 -8.28 19.39 -56.49 -1.10 -9.37 16 11 C -0.52 -28.83 10.04 67.95 0.68 -28.15 16 12 H 0.07 4.11 8.03 -2.91 -0.02 4.09 16 13 C 0.05 2.74 5.50 84.86 0.47 3.21 16 14 N -0.91 -53.84 13.97 21.65 0.30 -53.54 16 15 Si 0.91 42.59 27.74 68.60 1.90 44.49 16 16 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.23 -10.78 6.74 99.48 0.67 -10.11 16 19 N -0.49 -17.64 11.55 -303.19 -3.50 -21.14 16 20 C -0.09 -1.74 2.70 -52.16 -0.14 -1.88 16 21 C -0.11 -2.44 7.89 71.98 0.57 -1.87 16 22 C -0.11 -1.49 8.86 71.98 0.64 -0.85 16 23 H 0.07 0.83 7.92 -2.39 -0.02 0.81 16 24 H 0.08 0.79 8.02 -2.39 -0.02 0.77 16 25 H 0.07 0.81 7.77 -2.39 -0.02 0.79 16 26 H 0.03 0.83 5.17 -2.39 -0.01 0.82 16 27 H 0.08 1.33 8.07 -2.39 -0.02 1.31 16 28 H 0.07 1.26 7.92 -2.39 -0.02 1.24 16 29 H 0.14 3.09 7.96 -2.39 -0.02 3.07 16 30 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 31 H 0.13 4.22 8.14 -2.40 -0.02 4.20 16 32 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.04 1.12 7.62 -2.38 -0.02 1.10 16 34 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 35 H 0.06 1.41 4.96 -2.39 -0.01 1.39 16 36 H 0.07 0.83 7.77 -2.39 -0.02 0.81 16 37 H 0.08 0.82 8.02 -2.39 -0.02 0.80 16 38 H 0.06 0.86 8.09 -2.39 -0.02 0.84 16 Total: -1.00 -63.53 323.46 4.25 -59.29 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.02 Total: 10.11 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 5.24 Total: -19.97 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -3.67 Total: -87.65 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.85 Total: 3.11 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.90 Total: 44.49 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.10 Total: -9.37 kcal Total: -63.53 4.25 -59.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599195462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.334 kcal (2) G-P(sol) polarization free energy of solvation -63.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds