Wall clock time and date at job start Tue Mar 31 2020 05:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99879 * 2 1 4 4 H 1.48501 * 109.47269 * 269.99368 * 3 2 1 5 5 H 1.48502 * 109.47519 * 29.99243 * 3 2 1 6 6 H 1.48504 * 109.47626 * 149.99551 * 3 2 1 7 7 C 1.37879 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99941 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00117 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47269 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47151 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.47016 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00010 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46906 * 179.97438 * 13 12 11 15 15 N 1.29943 * 126.28938 * 89.97706 * 14 13 12 16 16 O 1.21305 * 110.25640 * 179.97438 * 15 14 13 17 17 C 1.33641 * 109.80488 * 0.02562 * 16 15 14 18 18 C 1.50703 * 126.54974 * 179.97438 * 17 16 15 19 19 C 1.53784 * 113.61272 * 300.01927 * 18 17 16 20 20 C 1.53787 * 87.07923 * 89.11465 * 19 18 17 21 21 C 1.53779 * 113.61433 * 37.51485 * 18 17 16 22 22 N 1.31129 * 106.90243 * 0.22037 * 17 16 15 23 23 H 0.96997 * 120.00157 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47554 * 59.99720 * 9 7 2 25 25 H 1.09011 * 109.46808 * 300.00131 * 9 7 2 26 26 H 1.09008 * 109.47091 * 59.99664 * 10 9 7 27 27 H 1.08999 * 109.47061 * 299.99919 * 10 9 7 28 28 H 1.08996 * 109.47548 * 60.00214 * 11 10 9 29 29 H 1.09002 * 109.47327 * 299.99269 * 11 10 9 30 30 H 1.08998 * 109.47137 * 60.00157 * 13 12 11 31 31 H 1.09001 * 109.46968 * 299.99971 * 13 12 11 32 32 H 1.09004 * 112.91097 * 168.77028 * 18 17 16 33 33 H 1.09004 * 113.61451 * 334.56951 * 19 18 17 34 34 H 1.08994 * 113.61477 * 203.66253 * 19 18 17 35 35 H 1.08997 * 113.61028 * 139.98291 * 20 19 18 36 36 H 1.09000 * 113.61529 * 270.88430 * 20 19 18 37 37 H 1.09006 * 113.61307 * 156.34016 * 21 18 17 38 38 H 1.08999 * 113.69146 * 25.44502 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5516 -2.6363 0.0009 12 16 6.1563 -4.3466 0.0016 13 6 7.9588 -4.1421 0.0022 14 6 8.6181 -5.4972 0.0034 15 7 8.9546 -6.1897 -1.0434 16 8 9.4651 -7.2376 -0.7074 17 6 9.5033 -7.3156 0.6262 18 6 10.0574 -8.4543 1.4431 19 6 9.3540 -9.7972 1.1847 20 6 10.3816 -10.0303 0.0646 21 6 11.3204 -9.0892 0.8376 22 7 8.9616 -6.2144 1.0882 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6802 -0.8889 26 1 3.6586 -3.1501 -0.8893 27 1 3.6580 -3.1505 0.8907 28 1 5.9150 -2.1226 0.8909 29 1 5.9149 -2.1225 -0.8891 30 1 8.2615 -3.5904 0.8922 31 1 8.2622 -3.5908 -0.8878 32 1 10.1559 -8.2093 2.5006 33 1 8.3309 -9.6918 0.8237 34 1 9.4417 -10.5022 2.0114 35 1 10.7416 -11.0576 0.0094 36 1 10.0694 -9.6375 -0.9030 37 1 11.9458 -9.6007 1.5695 38 1 11.8860 -8.4133 0.1963 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600651574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:47 Heat of formation + Delta-G solvation = 72.645192 kcal Electronic energy + Delta-G solvation = -18550.366279 eV Core-core repulsion = 15522.768978 eV Total energy + Delta-G solvation = -3027.597301 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.90042 -39.38993 -36.36110 -34.62892 -33.03672 -32.10616 -29.59587 -28.05104 -27.02135 -26.24476 -24.13226 -23.31433 -22.33444 -20.29266 -19.81254 -18.43753 -17.53532 -16.82534 -16.64000 -16.00517 -15.64941 -14.90261 -14.76944 -14.38950 -14.13701 -13.70217 -13.43032 -13.30618 -12.96397 -12.70303 -12.60278 -12.20759 -12.05676 -11.78217 -11.48164 -11.28569 -11.21444 -11.05819 -10.97182 -10.88811 -10.35877 -9.99438 -9.84852 -9.75447 -9.60258 -9.23635 -8.56255 -7.61367 -6.06063 -4.04770 0.75028 1.30486 2.31117 2.45087 2.62697 3.18675 3.28857 3.36390 3.38876 3.63578 3.98486 4.00423 4.28607 4.31479 4.42788 4.70527 4.93237 5.06508 5.10908 5.11918 5.26293 5.26439 5.33631 5.39255 5.39772 5.42942 5.43635 5.46161 5.72953 5.82913 5.92179 6.36620 6.45895 6.77847 7.21710 7.34125 7.74744 7.89780 8.51217 8.98805 9.55414 11.07317 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.052282 B = 0.002415 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.432756 B =11589.089377 C =11813.446920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.087 4.087 11 C -0.079 4.079 12 S -0.238 6.238 13 C -0.009 4.009 14 C 0.191 3.809 15 N -0.369 5.369 16 O 0.085 5.915 17 C 0.197 3.803 18 C -0.029 4.029 19 C -0.128 4.128 20 C -0.147 4.147 21 C -0.129 4.129 22 N -0.465 5.465 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.013 0.987 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.699 -18.413 2.283 31.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.126 4.126 11 C -0.227 4.227 12 S -0.012 6.012 13 C -0.158 4.158 14 C -0.082 4.082 15 N -0.075 5.075 16 O 0.024 5.976 17 C -0.024 4.024 18 C -0.049 4.049 19 C -0.166 4.166 20 C -0.185 4.185 21 C -0.167 4.167 22 N -0.198 5.198 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.031 0.969 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.699 -18.637 1.771 30.992 hybrid contribution 1.044 2.047 0.047 2.299 sum 25.744 -16.590 1.818 30.680 Atomic orbital electron populations 1.69910 1.06288 1.26925 1.50941 1.25032 0.94758 0.99175 0.94544 0.86767 0.80323 0.83608 0.78498 1.20274 1.21324 1.19048 1.21098 0.89237 0.94622 1.51012 0.90888 1.19573 0.97349 0.91207 0.96462 1.21287 0.88069 1.00698 1.02590 1.23736 1.02321 0.91908 1.04729 1.87229 0.99702 1.16161 1.98107 1.21431 0.96351 0.90612 1.07368 1.24799 1.00495 0.99182 0.83715 1.74687 1.14392 0.95071 1.23364 1.85298 1.57120 1.30514 1.24662 1.28147 0.96100 0.96075 0.82083 1.20742 0.97855 0.88429 0.97909 1.23001 0.99556 0.94165 0.99910 1.23028 0.96424 1.00591 0.98424 1.22998 0.95127 0.98572 1.00042 1.71884 1.15464 1.03443 1.29034 0.92679 0.96382 0.96851 0.91687 0.91611 0.90070 0.90150 0.86958 0.87414 0.85786 0.90557 0.87941 0.90401 0.89387 0.88076 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.16 4.04 -27.88 -0.11 -0.27 16 10 C -0.09 -1.75 5.16 -26.73 -0.14 -1.89 16 11 C -0.08 -1.27 5.94 37.15 0.22 -1.05 16 12 S -0.24 -3.76 21.72 -107.50 -2.33 -6.10 16 13 C -0.01 -0.11 6.57 36.01 0.24 0.13 16 14 C 0.19 2.63 7.48 -156.37 -1.17 1.46 16 15 N -0.37 -5.11 12.16 30.90 0.38 -4.73 16 16 O 0.09 0.99 10.25 18.10 0.19 1.18 16 17 C 0.20 2.05 7.35 -13.06 -0.10 1.95 16 18 C -0.03 -0.18 4.49 -90.96 -0.41 -0.59 16 19 C -0.13 -0.64 7.66 -25.91 -0.20 -0.84 16 20 C -0.15 -0.68 7.73 -25.92 -0.20 -0.88 16 21 C -0.13 -0.55 7.63 -25.92 -0.20 -0.75 16 22 N -0.47 -6.10 11.55 -9.86 -0.11 -6.22 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 25 H 0.01 0.31 7.57 -51.92 -0.39 -0.09 16 26 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.11 1.23 8.14 -51.92 -0.42 0.80 16 32 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.51 7.32 -51.93 -0.38 0.13 16 37 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -32.88 333.03 -9.06 -41.94 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -5.80 Total: -4.69 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.49 Total: -16.19 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 1.04 Total: -38.16 kcal Atomic # 8 Polarization: 0.99 SS G_CDS: 0.19 Total: 1.18 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -2.33 Total: -6.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.88 -9.06 -41.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600651574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.587 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds