Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86801 * 119.99827 * 2 1 4 4 H 1.48493 * 109.47312 * 90.00046 * 3 2 1 5 5 H 1.48499 * 109.47000 * 210.00166 * 3 2 1 6 6 H 1.48500 * 109.46905 * 329.99762 * 3 2 1 7 7 C 1.39081 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99755 * 200.21970 * 7 2 1 9 9 N 1.36820 * 119.99862 * 20.22016 * 7 2 1 10 10 C 1.34776 * 120.00177 * 43.50132 * 9 7 2 11 11 O 1.21600 * 119.99987 * 355.57632 * 10 9 7 12 12 C 1.47744 * 120.00205 * 175.58500 * 10 9 7 13 13 C 1.40637 * 119.71388 * 148.39976 * 12 10 9 14 14 C 1.35784 * 120.72693 * 179.70908 * 13 12 10 15 15 C 1.40576 * 119.99002 * 0.55722 * 14 13 12 16 16 C 1.40796 * 121.12256 * 179.76507 * 15 14 13 17 17 C 1.36576 * 118.20725 * 179.97438 * 16 15 14 18 18 C 1.39406 * 119.93889 * 359.97438 * 17 16 15 19 19 N 1.31034 * 121.71351 * 359.97438 * 18 17 16 20 20 C 1.33764 * 121.34391 * 0.02562 * 19 18 17 21 21 C 1.38502 * 119.71018 * 328.67190 * 12 10 9 22 22 C 1.46504 * 120.00100 * 223.49520 * 9 7 2 23 23 C 1.53001 * 117.49664 * 5.97541 * 22 9 7 24 24 C 1.52991 * 60.00276 * 252.51445 * 23 22 9 25 25 H 0.97002 * 120.00209 * 354.94643 * 1 2 3 26 26 H 1.08000 * 119.63703 * 359.97438 * 13 12 10 27 27 H 1.07999 * 120.00655 * 180.28222 * 14 13 12 28 28 H 1.07996 * 120.89988 * 359.96206 * 16 15 14 29 29 H 1.07998 * 120.03026 * 179.97438 * 17 16 15 30 30 H 1.07997 * 119.14609 * 180.02562 * 18 17 16 31 31 H 1.07997 * 120.24225 * 359.97438 * 21 12 10 32 32 H 1.08996 * 115.54858 * 151.68759 * 22 9 7 33 33 H 1.08999 * 117.49786 * 0.02562 * 23 22 9 34 34 H 1.09003 * 117.49597 * 145.02140 * 23 22 9 35 35 H 1.09001 * 117.49982 * 252.51698 * 24 23 22 36 36 H 1.09005 * 117.52165 * 107.48249 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0465 1.4000 5 1 3.5449 1.4402 -0.7001 6 1 1.4448 2.6526 -0.7001 7 6 2.0089 -1.2045 0.0005 8 1 3.0390 -1.2331 0.3238 9 7 1.3880 -2.3530 -0.4085 10 6 0.6121 -2.3439 -1.5104 11 8 0.3987 -1.2993 -2.0952 12 6 0.0207 -3.6031 -2.0079 13 6 -1.2262 -3.5786 -2.6580 14 6 -1.7859 -4.7227 -3.1285 15 6 -1.1237 -5.9509 -2.9577 16 6 -1.6845 -7.1522 -3.4317 17 6 -0.9896 -8.3112 -3.2340 18 6 0.2404 -8.2818 -2.5785 19 7 0.7603 -7.1620 -2.1394 20 6 0.1313 -5.9926 -2.3006 21 6 0.6964 -4.7982 -1.8250 22 6 1.5667 -3.5928 0.3513 23 6 2.3430 -3.5093 1.6671 24 6 2.9818 -4.1676 0.4427 25 1 -0.4850 0.8368 0.0740 26 1 -1.7422 -2.6388 -2.7882 27 1 -2.7419 -4.6898 -3.6299 28 1 -2.6386 -7.1571 -3.9377 29 1 -1.3926 -9.2496 -3.5852 30 1 0.7792 -9.2058 -2.4295 31 1 1.6518 -4.8113 -1.3215 32 1 0.7388 -4.2997 0.2990 33 1 2.7203 -2.5318 1.9677 34 1 2.0255 -4.1613 2.4809 35 1 3.0846 -5.2527 0.4509 36 1 3.7797 -3.6235 -0.0629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601015694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = 73.392170 kcal Electronic energy + Delta-G solvation = -21616.841676 eV Core-core repulsion = 18453.832815 eV Total energy + Delta-G solvation = -3163.008861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.60994 -38.85007 -36.58747 -35.85016 -33.34142 -32.83679 -31.17532 -30.18293 -29.69028 -25.47432 -24.21902 -23.35245 -22.18351 -21.69399 -21.05661 -19.95736 -17.93371 -17.11477 -16.65740 -16.13460 -15.69188 -14.76093 -14.54327 -14.25572 -14.18544 -13.92523 -13.77532 -13.35212 -13.02215 -12.93882 -12.55340 -12.02646 -11.59472 -11.42896 -11.21952 -11.06831 -10.91796 -10.86397 -10.72601 -10.35355 -10.20220 -9.94313 -9.72451 -9.33579 -8.81889 -8.48332 -8.12942 -7.91051 -7.10903 -6.19072 -3.91917 0.55640 0.96859 2.17416 3.02406 3.26832 3.36567 3.39094 4.08728 4.19267 4.40738 4.43989 4.70779 4.74465 4.86287 4.90916 4.97792 5.12610 5.25670 5.37902 5.50702 5.57262 5.64537 5.67732 5.78421 5.93719 6.00639 6.10042 6.20470 6.25385 6.34332 6.44262 6.62655 6.67455 6.74897 6.86219 6.92798 7.10317 7.54405 8.06466 8.18306 8.94216 9.06018 9.54879 10.18278 10.88442 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.005404 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.336722 B = 5180.551669 C = 6018.459275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.349 4.349 8 H 0.084 0.916 9 N -0.407 5.407 10 C 0.503 3.497 11 O -0.525 6.525 12 C -0.073 4.073 13 C -0.064 4.064 14 C -0.118 4.118 15 C -0.099 4.099 16 C -0.060 4.060 17 C -0.185 4.185 18 C 0.119 3.881 19 N -0.468 5.468 20 C 0.121 3.879 21 C -0.088 4.088 22 C 0.066 3.934 23 C -0.173 4.173 24 C -0.208 4.208 25 H 0.266 0.734 26 H 0.135 0.865 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -14.225 -3.159 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.139 4.139 3 Si 0.741 3.259 4 H -0.207 1.207 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.475 4.475 8 H 0.101 0.899 9 N -0.126 5.126 10 C 0.291 3.709 11 O -0.404 6.404 12 C -0.079 4.079 13 C -0.082 4.082 14 C -0.136 4.136 15 C -0.101 4.101 16 C -0.086 4.086 17 C -0.205 4.205 18 C -0.055 4.055 19 N -0.176 5.176 20 C 0.001 3.999 21 C -0.108 4.108 22 C -0.040 4.040 23 C -0.211 4.211 24 C -0.247 4.247 25 H 0.077 0.923 26 H 0.153 0.847 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.942 -13.391 -3.068 13.875 hybrid contribution -0.596 0.606 -0.331 0.912 sum -2.538 -12.785 -3.399 13.470 Atomic orbital electron populations 1.69824 1.06786 1.27755 1.40771 1.25285 0.94797 0.99555 0.94221 0.86169 0.79897 0.82060 0.77748 1.20734 1.19437 1.20830 1.18934 0.95555 0.83995 1.49045 0.89866 1.42683 1.43529 1.06450 1.19943 1.17683 0.84117 0.86927 0.82183 1.90639 1.60392 1.31603 1.57768 1.20647 0.94780 0.94695 0.97772 1.21050 0.94017 0.98802 0.94373 1.20812 1.00117 0.91214 1.01495 1.18891 0.96041 0.94712 1.00490 1.21433 0.99167 0.91664 0.96332 1.21805 0.97187 0.99087 1.02398 1.22871 0.92922 0.96270 0.93430 1.68020 1.33778 0.97996 1.17813 1.18827 0.91522 0.92328 0.97223 1.21868 1.01354 0.89189 0.98376 1.22014 0.93526 0.91233 0.97178 1.23144 1.04234 1.02636 0.91084 1.23395 0.98279 0.99409 1.03575 0.92349 0.84689 0.85385 0.84814 0.85044 0.82838 0.82800 0.87320 0.87397 0.89676 0.89221 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.99 11.66 55.50 0.65 -23.34 16 2 C 0.07 2.04 4.32 -17.45 -0.08 1.97 16 3 Si 0.91 21.61 29.60 -169.99 -5.03 16.58 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.35 -9.43 7.87 -15.01 -0.12 -9.54 16 8 H 0.08 2.15 7.36 -52.48 -0.39 1.77 16 9 N -0.41 -10.31 2.84 -108.83 -0.31 -10.62 16 10 C 0.50 13.11 6.80 -12.38 -0.08 13.03 16 11 O -0.53 -15.63 14.23 5.28 0.08 -15.55 16 12 C -0.07 -1.57 5.42 -105.01 -0.57 -2.14 16 13 C -0.06 -1.20 9.50 -39.56 -0.38 -1.58 16 14 C -0.12 -1.80 9.73 -39.58 -0.39 -2.19 16 15 C -0.10 -1.53 5.75 -106.72 -0.61 -2.14 16 16 C -0.06 -0.71 9.88 -39.22 -0.39 -1.09 16 17 C -0.18 -1.93 10.03 -39.75 -0.40 -2.33 16 18 C 0.12 1.43 11.15 -17.46 -0.19 1.24 16 19 N -0.47 -7.45 10.34 -10.98 -0.11 -7.56 16 20 C 0.12 2.11 6.60 -84.87 -0.56 1.55 16 21 C -0.09 -1.70 7.53 -38.66 -0.29 -1.99 16 22 C 0.07 1.37 4.25 -67.93 -0.29 1.09 16 23 C -0.17 -3.19 9.80 -26.74 -0.26 -3.45 16 24 C -0.21 -3.65 9.07 -26.73 -0.24 -3.90 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.14 2.61 7.92 -52.49 -0.42 2.19 16 27 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.15 2.95 4.59 -52.49 -0.24 2.71 16 32 H 0.11 2.18 6.10 -51.93 -0.32 1.86 16 33 H 0.11 2.15 6.79 -51.93 -0.35 1.80 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -33.04 305.41 -8.78 -41.82 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.81 Total: 5.56 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -4.85 Total: -11.49 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.23 Total: -41.52 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.08 Total: -15.55 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.04 -8.78 -41.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601015694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.214 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds