Wall clock time and date at job start Tue Mar 31 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33383 * 125.14641 * 2 1 4 4 C 1.38783 * 114.88691 * 179.72131 * 3 2 1 5 5 N 1.40821 * 122.61168 * 180.22543 * 4 3 2 6 6 C 1.34770 * 120.00242 * 25.18655 * 5 4 3 7 7 O 1.21595 * 120.00427 * 5.39024 * 6 5 4 8 8 N 1.34783 * 119.99624 * 185.38814 * 6 5 4 9 9 C 1.46502 * 119.99485 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46815 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47429 * 300.00509 * 10 9 8 12 12 C 1.53008 * 109.47078 * 60.00355 * 10 9 8 13 13 C 1.50700 * 109.47456 * 180.02562 * 10 9 8 14 14 H 1.08007 * 119.99773 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00539 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99718 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00273 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47235 * 89.99713 * 17 15 13 19 19 H 1.48503 * 109.47070 * 209.99834 * 17 15 13 20 20 H 1.48497 * 109.47035 * 329.99952 * 17 15 13 21 21 C 1.33773 * 114.76866 * 0.24163 * 4 3 2 22 22 S 1.75851 * 125.15139 * 180.09231 * 2 1 3 23 23 H 1.08992 * 109.46963 * 90.00427 * 1 2 3 24 24 H 1.08996 * 109.46650 * 210.00278 * 1 2 3 25 25 H 1.09002 * 109.47168 * 330.00323 * 1 2 3 26 26 H 1.08003 * 122.55766 * 359.97438 * 3 2 1 27 27 H 0.97006 * 119.99199 * 205.17987 * 5 4 3 28 28 H 0.97002 * 120.00370 * 359.97438 * 8 6 5 29 29 H 1.08990 * 109.47458 * 300.00229 * 9 8 6 30 30 H 1.09000 * 109.47225 * 60.00576 * 9 8 6 31 31 H 1.09000 * 109.47320 * 60.00064 * 11 10 9 32 32 H 1.09001 * 109.47241 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.47042 * 299.99602 * 11 10 9 34 34 H 1.09004 * 109.46879 * 59.99858 * 12 10 9 35 35 H 1.09001 * 109.47172 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.46899 * 300.00360 * 12 10 9 37 37 H 0.97000 * 120.00133 * 180.02562 * 16 15 13 38 38 H 1.08003 * 125.20122 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2749 1.0906 0.0000 4 6 3.6405 0.8435 0.0061 5 7 4.5986 1.8755 0.0117 6 6 4.2807 3.0874 0.5082 7 8 3.2014 3.2626 1.0401 8 7 5.1593 4.1053 0.4153 9 6 4.8135 5.4229 0.9545 10 6 5.9757 6.3903 0.7214 11 6 7.2273 5.8632 1.4260 12 6 6.2473 6.5089 -0.7797 13 6 5.6204 7.7455 1.2766 14 1 4.6616 7.9011 1.7489 15 6 6.5191 8.7867 1.1817 16 7 7.6867 8.5971 0.6070 17 14 6.0789 10.4663 1.8705 18 1 6.5125 10.5490 3.2884 19 1 6.7647 11.5205 1.0808 20 1 4.6094 10.6647 1.7899 21 6 3.9757 -0.4516 0.0060 22 16 2.5195 -1.4378 -0.0023 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.8652 2.0899 -0.0004 27 1 5.4874 1.7140 -0.3418 28 1 6.0205 3.9655 -0.0086 29 1 3.9217 5.7981 0.4528 30 1 4.6205 5.3385 2.0239 31 1 7.4846 4.8830 1.0248 32 1 8.0551 6.5527 1.2603 33 1 7.0338 5.7788 2.4954 34 1 5.3556 6.8844 -1.2817 35 1 7.0750 7.1984 -0.9458 36 1 6.5045 5.5285 -1.1809 37 1 8.3192 9.3296 0.5405 38 1 4.9861 -0.8332 0.0106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603149480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:13 Heat of formation + Delta-G solvation = -2.520832 kcal Electronic energy + Delta-G solvation = -19715.442739 eV Core-core repulsion = 16684.585995 eV Total energy + Delta-G solvation = -3030.856745 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29415 -37.94259 -36.30278 -34.17355 -33.27563 -31.33176 -30.44929 -26.81962 -25.75622 -25.67427 -24.96177 -22.59508 -21.02672 -19.38100 -18.76712 -18.43240 -17.05958 -16.14130 -15.82078 -15.18133 -14.73942 -14.64534 -14.04227 -13.81214 -13.67005 -13.17139 -13.07926 -12.91653 -12.49896 -12.24831 -12.20987 -12.00912 -11.43556 -11.22837 -10.90896 -10.85239 -10.70180 -10.43061 -10.23310 -10.11496 -9.81286 -9.66347 -9.36062 -8.82430 -8.58625 -8.52154 -8.37198 -7.77473 -6.04486 -4.14617 0.97131 1.58283 1.88275 2.64887 3.07798 3.27281 3.34382 3.38699 3.60701 4.35519 4.49991 4.84166 5.17335 5.19482 5.22525 5.40627 5.51241 5.75437 5.93525 6.12284 6.21953 6.22556 6.30781 6.46752 6.73518 6.78155 6.79100 6.86053 6.98956 6.99328 7.20477 7.34349 7.52715 7.67470 7.98172 8.08635 8.27986 8.36994 8.82096 8.87878 9.51403 10.97015 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040997 B = 0.003196 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.808304 B = 8758.379926 C = 9193.283473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.170 4.170 3 C -0.133 4.133 4 C 0.180 3.820 5 N -0.681 5.681 6 C 0.697 3.303 7 O -0.581 6.581 8 N -0.726 5.726 9 C 0.149 3.851 10 C 0.056 3.944 11 C -0.131 4.131 12 C -0.130 4.130 13 C -0.506 4.506 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.280 4.280 22 S 0.095 5.905 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.161 0.839 27 H 0.406 0.594 28 H 0.396 0.604 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.005 0.995 32 H 0.086 0.914 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.086 0.914 36 H 0.005 0.995 37 H 0.260 0.740 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 -17.348 -3.651 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.288 4.288 3 C -0.164 4.164 4 C 0.072 3.928 5 N -0.329 5.329 6 C 0.397 3.603 7 O -0.458 6.458 8 N -0.380 5.380 9 C 0.026 3.974 10 C 0.056 3.944 11 C -0.188 4.188 12 C -0.188 4.188 13 C -0.545 4.545 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.419 4.419 22 S 0.356 5.644 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.178 0.822 27 H 0.241 0.759 28 H 0.231 0.769 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.334 -18.479 -3.205 20.138 hybrid contribution 1.194 2.268 0.025 2.563 sum -6.140 -16.211 -3.181 17.625 Atomic orbital electron populations 1.20333 0.87680 1.03247 1.02689 1.24335 1.00026 0.95276 1.09128 1.20233 0.91466 1.00991 1.03720 1.16508 0.89158 0.86580 1.00509 1.42666 1.15089 1.09779 1.65366 1.16056 0.84843 0.79972 0.79408 1.90875 1.23152 1.82709 1.49084 1.45552 1.18918 1.10692 1.62816 1.21668 0.99619 0.78765 0.97326 1.18370 0.90065 0.92681 0.93332 1.21833 1.01807 0.97231 0.97970 1.21830 1.02032 0.98125 0.96829 1.20979 1.01993 0.93643 1.37873 0.92359 1.24877 0.94909 0.98759 0.94958 1.69802 1.07116 1.31916 1.43642 0.86558 0.78655 0.83647 0.78950 1.20696 1.21269 1.19863 1.24869 1.02527 0.94941 1.19597 1.83948 0.95725 1.09060 1.75690 0.90757 0.91370 0.90270 0.82217 0.75932 0.76948 0.92661 0.92693 0.97588 0.89572 0.95400 0.95393 0.89580 0.97570 0.92988 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.37 36.01 0.37 -0.36 16 2 C -0.17 -2.05 6.50 -36.00 -0.23 -2.28 16 3 C -0.13 -1.94 8.72 -41.08 -0.36 -2.30 16 4 C 0.18 2.51 6.36 -85.09 -0.54 1.97 16 5 N -0.68 -9.43 5.44 -15.19 -0.08 -9.51 16 6 C 0.70 12.28 8.43 -86.92 -0.73 11.55 16 7 O -0.58 -12.17 13.83 5.28 0.07 -12.09 16 8 N -0.73 -12.70 4.96 -65.23 -0.32 -13.02 16 9 C 0.15 3.12 4.50 -4.04 -0.02 3.10 16 10 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 11 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 12 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 13 C -0.51 -13.12 8.01 -34.44 -0.28 -13.39 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 16 N -0.89 -23.38 9.35 55.43 0.52 -22.87 16 17 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.28 -3.24 11.18 29.17 0.33 -2.91 16 22 S 0.10 1.01 23.32 -107.50 -2.51 -1.50 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.16 2.66 6.28 -52.48 -0.33 2.33 16 27 H 0.41 4.28 8.84 -40.82 -0.36 3.92 16 28 H 0.40 6.14 6.18 -40.82 -0.25 5.88 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 32 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 36 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 37 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -28.75 321.92 -8.73 -37.49 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.21 Total: 8.09 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.03 Total: -6.97 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.11 Total: -45.40 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.75 -8.73 -37.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603149480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.964 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds