Wall clock time and date at job start Tue Mar 31 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48494 * 109.46954 * 269.99838 * 3 2 1 5 5 H 1.48497 * 109.47405 * 30.00001 * 3 2 1 6 6 H 1.48503 * 109.46771 * 150.00135 * 3 2 1 7 7 C 1.37869 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00187 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47015 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99792 * 180.02562 * 10 9 7 12 12 O 1.21652 * 119.99881 * 0.02562 * 11 10 9 13 13 C 1.46762 * 120.00182 * 180.02562 * 11 10 9 14 14 C 1.34617 * 120.00182 * 188.52944 * 13 11 10 15 15 C 1.47397 * 120.00063 * 31.96011 * 14 13 11 16 16 C 1.40644 * 119.27747 * 185.60085 * 15 14 13 17 17 C 1.36321 * 119.79590 * 179.97438 * 16 15 14 18 18 C 1.40888 * 118.30225 * 0.02562 * 17 16 15 19 19 C 1.40367 * 121.22042 * 180.27749 * 18 17 16 20 20 C 1.36175 * 119.66221 * 180.29223 * 19 18 17 21 21 C 1.39390 * 120.90209 * 359.39918 * 20 19 18 22 22 C 1.36029 * 121.06588 * 0.33182 * 21 20 19 23 23 C 1.40788 * 119.74431 * 359.97020 * 22 21 20 24 24 N 1.32148 * 119.27810 * 5.61764 * 15 14 13 25 25 H 0.97005 * 119.99640 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47020 * 60.00342 * 9 7 2 27 27 H 1.08999 * 109.47261 * 299.99624 * 9 7 2 28 28 H 0.96998 * 120.00521 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.99467 * 8.52175 * 13 11 10 30 30 H 1.07998 * 119.99755 * 211.95795 * 14 13 11 31 31 H 1.07995 * 120.09834 * 359.97438 * 16 15 14 32 32 H 1.08002 * 120.84841 * 180.02562 * 17 16 15 33 33 H 1.08010 * 120.16306 * 0.02562 * 19 18 17 34 34 H 1.08009 * 119.54735 * 179.70358 * 20 19 18 35 35 H 1.08001 * 119.46673 * 180.30021 * 21 20 19 36 36 H 1.08004 * 120.12701 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0000 12 8 0.5576 -5.1056 -0.0009 13 6 2.7073 -5.9989 0.0006 14 6 2.2684 -7.2597 -0.1728 15 6 1.0884 -7.5198 -1.0170 16 6 0.5715 -8.8256 -1.0931 17 6 -0.5197 -9.0779 -1.8701 18 6 -1.0974 -8.0060 -2.5789 19 6 -2.2255 -8.1955 -3.3923 20 6 -2.7545 -7.1381 -4.0680 21 6 -2.1984 -5.8650 -3.9537 22 6 -1.1086 -5.6427 -3.1705 23 6 -0.5288 -6.7115 -2.4608 24 7 0.5396 -6.5210 -1.6859 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 3.1566 -3.4355 0.0009 29 1 3.7612 -5.8083 0.1400 30 1 2.7810 -8.0806 0.3065 31 1 1.0377 -9.6258 -0.5376 32 1 -0.9310 -10.0741 -1.9407 33 1 -2.6691 -9.1759 -3.4852 34 1 -3.6196 -7.2870 -4.6971 35 1 -2.6396 -5.0419 -4.4962 36 1 -0.6904 -4.6500 -3.0928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726262855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:21 Heat of formation + Delta-G solvation = 57.808262 kcal Electronic energy + Delta-G solvation = -20749.822863 eV Core-core repulsion = 17586.138233 eV Total energy + Delta-G solvation = -3163.684630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59755 -38.61873 -36.97447 -34.12429 -33.34698 -32.90326 -32.17956 -30.06441 -29.44318 -27.28712 -24.88170 -23.41774 -22.81859 -21.93694 -20.89996 -19.09049 -18.13392 -17.06712 -17.04958 -15.88837 -15.56583 -14.90738 -14.63168 -14.34398 -14.22402 -14.06511 -13.95825 -13.46002 -13.36307 -12.96142 -12.58203 -12.37520 -11.89397 -11.70765 -11.58337 -11.41990 -11.25369 -10.91440 -10.84162 -10.40730 -10.23997 -9.49206 -9.31552 -9.14420 -8.78033 -8.62544 -8.33491 -7.72005 -7.63552 -6.10742 -4.16828 0.34430 0.80078 1.71293 2.25027 3.24476 3.27566 3.33521 3.36101 4.19300 4.28146 4.33382 4.43794 4.52613 4.63373 4.80951 4.91138 4.97031 5.21058 5.25303 5.29545 5.39810 5.51673 5.52823 5.73291 5.93990 6.00939 6.12088 6.20311 6.33962 6.42931 6.52373 6.58750 6.76214 7.01559 7.43677 7.61376 7.63562 7.78881 8.05604 8.27313 8.78744 8.90750 9.33752 9.51597 10.99502 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019656 B = 0.004355 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.144921 B = 6427.183568 C = 7651.742394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.254 3.746 10 N -0.710 5.710 11 C 0.527 3.473 12 O -0.527 6.527 13 C -0.150 4.150 14 C -0.072 4.072 15 C 0.167 3.833 16 C -0.154 4.154 17 C -0.076 4.076 18 C -0.102 4.102 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.071 4.071 23 C 0.132 3.868 24 N -0.398 5.398 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.024 0.976 28 H 0.388 0.612 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 -18.497 -5.585 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.133 3.867 10 N -0.359 5.359 11 C 0.313 3.687 12 O -0.404 6.404 13 C -0.173 4.173 14 C -0.092 4.092 15 C 0.017 3.983 16 C -0.174 4.174 17 C -0.102 4.102 18 C -0.105 4.105 19 C -0.127 4.127 20 C -0.133 4.133 21 C -0.135 4.135 22 C -0.090 4.090 23 C 0.008 3.992 24 N -0.106 5.106 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.220 0.780 29 H 0.151 0.849 30 H 0.159 0.841 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.027 -17.590 -5.588 18.457 hybrid contribution 0.501 0.234 0.085 0.560 sum 0.529 -17.357 -5.504 18.216 Atomic orbital electron populations 1.69987 1.06084 1.27119 1.49228 1.24942 0.94883 0.99360 0.94830 0.86443 0.79649 0.82801 0.78178 1.20508 1.21068 1.19768 1.21264 0.93249 0.90609 1.52781 0.91993 1.19015 0.88308 0.81936 0.97481 1.46391 1.10760 1.06251 1.72449 1.18272 0.88607 0.83256 0.78583 1.90752 1.16181 1.84372 1.49116 1.23500 0.99211 0.94096 1.00536 1.22042 0.94461 0.97068 0.95656 1.20160 0.94191 0.88603 0.95381 1.21826 0.97576 0.97650 1.00394 1.21246 0.95316 0.98288 0.95307 1.18941 0.97491 0.94524 0.99503 1.20882 0.95531 0.99221 0.97082 1.20899 0.99925 0.92910 0.99520 1.20885 0.96205 0.97236 0.99194 1.21023 0.95097 0.98774 0.94078 1.18971 0.93344 0.91807 0.95084 1.68502 1.07979 1.31106 1.03039 0.92576 0.95614 0.95849 0.78018 0.84948 0.84126 0.84832 0.84807 0.85763 0.85910 0.85424 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.93 5.43 -5.19 -0.03 6.90 16 10 N -0.71 -15.68 5.54 -62.78 -0.35 -16.03 16 11 C 0.53 11.16 6.99 -12.82 -0.09 11.07 16 12 O -0.53 -13.14 13.25 5.23 0.07 -13.07 16 13 C -0.15 -2.30 9.89 -37.42 -0.37 -2.67 16 14 C -0.07 -0.99 9.75 -37.14 -0.36 -1.35 16 15 C 0.17 2.70 6.13 -83.10 -0.51 2.19 16 16 C -0.15 -1.96 9.73 -39.36 -0.38 -2.34 16 17 C -0.08 -0.94 9.88 -39.27 -0.39 -1.32 16 18 C -0.10 -1.52 5.75 -106.70 -0.61 -2.13 16 19 C -0.11 -1.31 9.76 -39.52 -0.39 -1.70 16 20 C -0.11 -1.36 9.96 -39.89 -0.40 -1.75 16 21 C -0.12 -1.59 9.94 -39.95 -0.40 -1.98 16 22 C -0.07 -1.23 9.99 -39.41 -0.39 -1.63 16 23 C 0.13 2.39 6.61 -84.85 -0.56 1.83 16 24 N -0.40 -7.77 6.22 -7.66 -0.05 -7.82 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.39 7.35 8.30 -40.82 -0.34 7.01 16 29 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.14 2.59 8.06 -52.48 -0.42 2.17 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -35.33 318.64 -9.21 -44.53 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.10 Total: 5.78 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -5.29 Total: -8.53 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.34 Total: -49.68 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.07 Total: -13.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.33 -9.21 -44.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726262855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.342 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds