Wall clock time and date at job start Tue Mar 31 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47034 * 2 1 4 4 C 1.53001 * 109.46922 * 239.99815 * 2 1 3 5 5 C 1.53000 * 109.46973 * 175.00063 * 4 2 1 6 6 O 1.42895 * 109.47245 * 179.97438 * 5 4 2 7 7 S 1.81403 * 109.46986 * 119.99989 * 2 1 3 8 8 C 1.81400 * 102.99630 * 294.99707 * 7 2 1 9 9 C 1.50706 * 109.46914 * 180.02562 * 8 7 2 10 10 C 1.38294 * 119.93130 * 269.73168 * 9 8 7 11 11 C 1.38099 * 120.07055 * 179.72623 * 10 9 8 12 12 C 1.38885 * 119.92916 * 0.56465 * 11 10 9 13 13 O 1.35746 * 120.07221 * 179.68553 * 12 11 10 14 14 C 1.34828 * 117.00240 * 174.48968 * 13 12 11 15 15 H 1.08006 * 120.00054 * 5.05118 * 14 13 12 16 16 C 1.38655 * 120.00332 * 185.05591 * 14 13 12 17 17 N 1.31557 * 120.00166 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99665 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47524 * 90.00171 * 18 16 14 20 20 H 1.48503 * 109.46813 * 210.00052 * 18 16 14 21 21 H 1.48496 * 109.47394 * 329.99878 * 18 16 14 22 22 C 1.38888 * 119.85809 * 359.70827 * 12 11 10 23 23 C 1.38097 * 119.93011 * 359.97438 * 22 12 11 24 24 H 1.09004 * 109.47205 * 60.00453 * 1 2 3 25 25 H 1.09007 * 109.47366 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47395 * 299.99955 * 1 2 3 27 27 H 1.09003 * 109.47206 * 294.99718 * 4 2 1 28 28 H 1.09002 * 109.47333 * 54.99993 * 4 2 1 29 29 H 1.09003 * 109.46873 * 299.99858 * 5 4 2 30 30 H 1.09002 * 109.47149 * 59.99817 * 5 4 2 31 31 H 0.96705 * 114.00302 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47688 * 300.00062 * 8 7 2 33 33 H 1.09002 * 109.47419 * 60.00542 * 8 7 2 34 34 H 1.08001 * 119.96614 * 359.97036 * 10 9 8 35 35 H 1.08000 * 120.04137 * 180.26759 * 11 10 9 36 36 H 0.96994 * 120.00190 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.03290 * 179.97438 * 22 12 11 38 38 H 1.07997 * 119.96090 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 8 4.0412 -1.2875 -2.4801 7 16 2.1346 -0.8551 1.4812 8 6 1.5664 0.2154 2.8308 9 6 1.9984 -0.3688 4.1512 10 6 1.1699 -1.2519 4.8191 11 6 1.5653 -1.7933 6.0264 12 6 2.7913 -1.4410 6.5755 13 8 3.1801 -1.9665 7.7652 14 6 4.4270 -1.6730 8.1859 15 1 5.0372 -0.9805 7.6249 16 6 4.9260 -2.2601 9.3387 17 7 6.1428 -1.9740 9.7489 18 14 3.8704 -3.4572 10.3092 19 1 4.0964 -4.8362 9.8068 20 1 4.2373 -3.3877 11.7465 21 1 2.4385 -3.0994 10.1460 22 6 3.6187 -0.5494 5.9050 23 6 3.2203 -0.0166 4.6948 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7516 -1.7716 -1.2055 28 1 1.6053 -0.2618 -2.1370 29 1 3.8531 0.4369 -1.3574 30 1 3.9994 -1.0728 -0.4259 31 1 5.0020 -1.2593 -2.5859 32 1 2.0001 1.2085 2.7141 33 1 0.4792 0.2883 2.8037 34 1 0.2143 -1.5216 4.3942 35 1 0.9197 -2.4863 6.5455 36 1 6.4917 -2.3844 10.5555 37 1 4.5725 -0.2731 6.3296 38 1 3.8634 0.6764 4.1728 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742454170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:40 Heat of formation + Delta-G solvation = -70.412392 kcal Electronic energy + Delta-G solvation = -18839.877987 eV Core-core repulsion = 15773.784493 eV Total energy + Delta-G solvation = -3066.093495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.25156 -37.48244 -36.92386 -34.90170 -32.56320 -31.43676 -30.31569 -29.37118 -26.50806 -24.75422 -23.62421 -22.16915 -21.69567 -20.51056 -17.95709 -17.58615 -17.31773 -16.71253 -15.56077 -15.05311 -14.96564 -14.68301 -14.41860 -14.17929 -13.88735 -13.76370 -13.49760 -13.06029 -12.78308 -12.66084 -12.27179 -12.26244 -12.07729 -11.93878 -11.49740 -11.27026 -11.20549 -10.96772 -10.74876 -10.62236 -10.23051 -10.19892 -9.71212 -9.44590 -8.90229 -8.33311 -7.59442 -7.35371 -6.47087 -4.13299 1.40492 2.08351 2.28768 2.76979 3.19425 3.23443 3.37279 3.86234 4.19535 4.46463 4.56122 4.68070 4.78352 4.93038 5.04900 5.06733 5.09535 5.14847 5.15665 5.28233 5.45769 5.50581 5.58430 5.64835 5.69891 5.76609 5.82137 5.92437 6.07377 6.25508 6.49134 6.72081 6.95798 7.14851 7.22713 7.38471 7.53471 7.74113 7.97609 8.87698 9.48970 10.60227 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028609 B = 0.003135 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.472357 B = 8929.773828 C = 9436.353849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 H 0.084 0.916 4 C -0.097 4.097 5 C 0.071 3.929 6 O -0.578 6.578 7 S -0.255 6.255 8 C -0.019 4.019 9 C -0.172 4.172 10 C -0.055 4.055 11 C -0.193 4.193 12 C 0.166 3.834 13 O -0.213 6.213 14 C -0.391 4.391 15 H 0.107 0.893 16 C 0.064 3.936 17 N -0.876 5.876 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.222 4.222 23 C -0.052 4.052 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.380 0.620 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.280 0.720 37 H 0.135 0.865 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.503 4.865 -18.318 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 H 0.103 0.897 4 C -0.136 4.136 5 C -0.007 4.007 6 O -0.384 6.384 7 S -0.025 6.025 8 C -0.166 4.166 9 C -0.174 4.174 10 C -0.075 4.075 11 C -0.212 4.212 12 C 0.112 3.888 13 O -0.117 6.117 14 C -0.466 4.466 15 H 0.125 0.875 16 C -0.139 4.139 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.241 4.241 23 C -0.072 4.072 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.227 0.773 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.091 0.909 37 H 0.152 0.848 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.505 3.642 -18.046 20.280 hybrid contribution -0.191 0.888 0.548 1.061 sum -8.697 4.530 -17.498 20.058 Atomic orbital electron populations 1.22054 0.93059 1.03248 1.02086 1.23077 0.98927 1.01674 0.95740 0.89720 1.21297 0.94547 1.01980 0.95748 1.22304 0.94739 0.95730 0.87914 1.86419 1.27331 1.78868 1.45770 1.87383 1.75547 1.39547 1.00032 1.22091 1.02526 0.98928 0.93075 1.18654 0.97530 1.05485 0.95752 1.20475 0.98220 0.95050 0.93755 1.20187 0.96824 1.06270 0.97968 1.19165 0.92908 0.91501 0.85177 1.83570 1.32992 1.64959 1.30228 1.20793 0.87551 1.27861 1.10395 0.87523 1.24482 0.95671 0.97449 0.96345 1.69641 1.14808 1.42805 1.24131 0.86173 0.81396 0.80860 0.78453 1.19784 1.20717 1.18314 1.21255 1.02557 1.02800 0.97526 1.20636 0.94377 0.97628 0.94521 0.92009 0.91242 0.92211 0.90297 0.90332 0.93791 0.91965 0.77271 0.90328 0.90176 0.86748 0.86320 0.90939 0.84766 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.10 37.16 0.34 -0.85 16 2 C -0.07 -0.62 2.82 -26.73 -0.08 -0.69 16 3 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 4 C -0.10 -0.92 5.05 -26.73 -0.14 -1.06 16 5 C 0.07 0.69 6.87 37.16 0.26 0.94 16 6 O -0.58 -5.75 13.66 -35.23 -0.48 -6.23 16 7 S -0.26 -3.28 19.94 -107.50 -2.14 -5.43 16 8 C -0.02 -0.24 5.76 36.01 0.21 -0.04 16 9 C -0.17 -2.79 5.14 -104.58 -0.54 -3.32 16 10 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 11 C -0.19 -3.77 9.99 -39.39 -0.39 -4.16 16 12 C 0.17 3.78 6.65 -39.10 -0.26 3.52 16 13 O -0.21 -5.55 8.59 0.06 0.00 -5.55 16 14 C -0.39 -10.88 9.95 30.89 0.31 -10.57 16 15 H 0.11 3.03 5.44 -52.48 -0.29 2.74 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 17 N -0.88 -25.05 13.96 55.48 0.77 -24.28 16 18 Si 0.91 21.43 28.62 -169.99 -4.86 16.56 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.22 -4.71 9.17 -39.39 -0.36 -5.07 16 23 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.67 7.13 -51.93 -0.37 0.30 16 31 H 0.38 2.12 9.12 45.56 0.42 2.54 16 32 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.08 0.90 7.08 -51.92 -0.37 0.54 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.13 2.99 5.64 -52.49 -0.30 2.69 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -30.21 332.22 -7.85 -38.06 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.62 Total: 4.10 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.52 Total: -22.23 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.77 Total: -24.28 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.48 Total: -11.79 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.86 Total: 16.56 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -2.14 Total: -5.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.21 -7.85 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742454170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.353 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds