Wall clock time and date at job start Tue Mar 31 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47034 * 2 1 4 4 C 1.53001 * 109.46922 * 239.99815 * 2 1 3 5 5 C 1.53000 * 109.46973 * 175.00063 * 4 2 1 6 6 O 1.42895 * 109.47245 * 179.97438 * 5 4 2 7 7 S 1.81403 * 109.46986 * 119.99989 * 2 1 3 8 8 C 1.81400 * 102.99630 * 294.99707 * 7 2 1 9 9 C 1.50706 * 109.46914 * 180.02562 * 8 7 2 10 10 C 1.38294 * 119.93130 * 269.73168 * 9 8 7 11 11 C 1.38099 * 120.07055 * 179.72623 * 10 9 8 12 12 C 1.38885 * 119.92916 * 0.56465 * 11 10 9 13 13 O 1.35746 * 120.07221 * 179.68553 * 12 11 10 14 14 C 1.34828 * 117.00240 * 174.48968 * 13 12 11 15 15 H 1.08006 * 120.00054 * 5.05118 * 14 13 12 16 16 C 1.38655 * 120.00332 * 185.05591 * 14 13 12 17 17 N 1.31557 * 120.00166 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99665 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47524 * 90.00171 * 18 16 14 20 20 H 1.48503 * 109.46813 * 210.00052 * 18 16 14 21 21 H 1.48496 * 109.47394 * 329.99878 * 18 16 14 22 22 C 1.38888 * 119.85809 * 359.70827 * 12 11 10 23 23 C 1.38097 * 119.93011 * 359.97438 * 22 12 11 24 24 H 1.09004 * 109.47205 * 60.00453 * 1 2 3 25 25 H 1.09007 * 109.47366 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47395 * 299.99955 * 1 2 3 27 27 H 1.09003 * 109.47206 * 294.99718 * 4 2 1 28 28 H 1.09002 * 109.47333 * 54.99993 * 4 2 1 29 29 H 1.09003 * 109.46873 * 299.99858 * 5 4 2 30 30 H 1.09002 * 109.47149 * 59.99817 * 5 4 2 31 31 H 0.96705 * 114.00302 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47688 * 300.00062 * 8 7 2 33 33 H 1.09002 * 109.47419 * 60.00542 * 8 7 2 34 34 H 1.08001 * 119.96614 * 359.97036 * 10 9 8 35 35 H 1.08000 * 120.04137 * 180.26759 * 11 10 9 36 36 H 0.96994 * 120.00190 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.03290 * 179.97438 * 22 12 11 38 38 H 1.07997 * 119.96090 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 8 4.0412 -1.2875 -2.4801 7 16 2.1346 -0.8551 1.4812 8 6 1.5664 0.2154 2.8308 9 6 1.9984 -0.3688 4.1512 10 6 1.1699 -1.2519 4.8191 11 6 1.5653 -1.7933 6.0264 12 6 2.7913 -1.4410 6.5755 13 8 3.1801 -1.9665 7.7652 14 6 4.4270 -1.6730 8.1859 15 1 5.0372 -0.9805 7.6249 16 6 4.9260 -2.2601 9.3387 17 7 6.1428 -1.9740 9.7489 18 14 3.8704 -3.4572 10.3092 19 1 4.0964 -4.8362 9.8068 20 1 4.2373 -3.3877 11.7465 21 1 2.4385 -3.0994 10.1460 22 6 3.6187 -0.5494 5.9050 23 6 3.2203 -0.0166 4.6948 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7516 -1.7716 -1.2055 28 1 1.6053 -0.2618 -2.1370 29 1 3.8531 0.4369 -1.3574 30 1 3.9994 -1.0728 -0.4259 31 1 5.0020 -1.2593 -2.5859 32 1 2.0001 1.2085 2.7141 33 1 0.4792 0.2883 2.8037 34 1 0.2143 -1.5216 4.3942 35 1 0.9197 -2.4863 6.5455 36 1 6.4917 -2.3844 10.5555 37 1 4.5725 -0.2731 6.3296 38 1 3.8634 0.6764 4.1728 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742454170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:40 Heat of formation + Delta-G solvation = -89.463002 kcal Electronic energy + Delta-G solvation = -18840.704084 eV Core-core repulsion = 15773.784493 eV Total energy + Delta-G solvation = -3066.919591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91800 -38.57574 -38.20414 -35.62171 -34.54146 -32.88148 -31.85155 -30.11250 -28.11162 -26.45827 -24.32330 -23.73563 -22.63294 -21.89580 -19.84801 -19.14088 -18.30669 -17.54936 -16.73432 -16.59057 -16.28085 -15.83966 -15.71260 -15.48571 -15.25508 -15.10647 -14.65749 -14.43078 -14.21413 -14.04718 -13.72835 -13.32689 -13.09210 -12.93645 -12.76599 -12.53547 -12.43749 -12.22132 -12.00913 -11.95735 -11.89076 -11.30968 -10.98086 -10.90178 -10.57945 -9.84557 -8.98362 -8.58609 -8.51636 -6.24272 0.21038 0.54332 1.09035 1.31229 1.35881 1.51662 1.74755 2.27188 2.77904 3.03326 3.16342 3.20663 3.82966 3.88336 3.93360 3.98513 4.12567 4.24610 4.31433 4.44051 4.45581 4.52417 4.57984 4.63121 4.74806 4.84649 4.88936 4.94785 5.04445 5.12412 5.21038 5.29070 5.33761 5.53322 5.68593 5.76953 5.87530 6.19208 6.82474 6.84734 7.55717 8.59904 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028609 B = 0.003135 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.472357 B = 8929.773828 C = 9436.353849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 H 0.099 0.901 4 C -0.096 4.096 5 C 0.071 3.929 6 O -0.595 6.595 7 S -0.299 6.299 8 C -0.015 4.015 9 C -0.146 4.146 10 C -0.050 4.050 11 C -0.192 4.192 12 C 0.125 3.875 13 O -0.242 6.242 14 C -0.401 4.401 15 H 0.081 0.919 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.262 1.262 22 C -0.238 4.238 23 C -0.055 4.055 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.397 0.603 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.285 0.715 37 H 0.109 0.891 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 5.514 -20.960 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 H 0.117 0.883 4 C -0.135 4.135 5 C -0.007 4.007 6 O -0.404 6.404 7 S -0.070 6.070 8 C -0.162 4.162 9 C -0.148 4.148 10 C -0.070 4.070 11 C -0.211 4.211 12 C 0.075 3.925 13 O -0.150 6.150 14 C -0.477 4.477 15 H 0.099 0.901 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.186 1.186 22 C -0.257 4.257 23 C -0.075 4.075 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.247 0.753 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.172 0.828 35 H 0.149 0.851 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.219 4.308 -20.723 23.955 hybrid contribution 0.520 0.837 0.897 1.332 sum -10.699 5.145 -19.826 23.109 Atomic orbital electron populations 1.22060 0.91740 1.03253 1.03301 1.23111 0.99796 1.01561 0.93080 0.88267 1.21308 0.94537 1.01290 0.96349 1.22300 0.94869 0.96334 0.87207 1.86376 1.29155 1.79083 1.45773 1.87597 1.76369 1.40594 1.02455 1.22091 1.04201 0.99270 0.90620 1.19118 0.95916 1.03026 0.96724 1.20935 0.99671 0.93995 0.92382 1.20514 0.95544 1.06260 0.98822 1.19709 0.94667 0.92817 0.85265 1.83515 1.31994 1.67061 1.32392 1.20718 0.88530 1.27786 1.10682 0.90122 1.25289 0.96919 0.99260 0.97314 1.69725 1.16444 1.44843 1.25269 0.85214 0.79293 0.78597 0.77602 1.19134 1.19128 1.18573 1.21263 1.01820 1.03557 0.99075 1.20901 0.95601 0.97735 0.93257 0.90090 0.91879 0.91675 0.91783 0.88778 0.92318 0.93593 0.75332 0.88511 0.87639 0.82839 0.85094 0.90509 0.87272 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.10 71.98 0.66 -1.09 16 2 C -0.05 -0.71 2.82 30.59 0.09 -0.62 16 3 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.10 -1.55 5.05 30.59 0.15 -1.39 16 5 C 0.07 1.21 6.87 71.98 0.49 1.70 16 6 O -0.60 -10.73 13.66 -148.98 -2.03 -12.77 16 7 S -0.30 -6.77 19.94 -56.49 -1.13 -7.90 16 8 C -0.01 -0.31 5.76 71.24 0.41 0.10 16 9 C -0.15 -4.28 5.14 -19.83 -0.10 -4.39 16 10 C -0.05 -1.52 9.69 22.25 0.22 -1.31 16 11 C -0.19 -7.29 9.99 22.39 0.22 -7.07 16 12 C 0.13 5.87 6.65 22.58 0.15 6.02 16 13 O -0.24 -13.20 8.59 -22.68 -0.19 -13.40 16 14 C -0.40 -23.73 9.95 67.92 0.68 -23.06 16 15 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 16 C 0.01 0.63 5.49 84.83 0.47 1.09 16 17 N -0.92 -55.25 13.96 21.61 0.30 -54.95 16 18 Si 0.97 45.48 28.62 68.60 1.96 47.45 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 22 C -0.24 -10.47 9.17 22.39 0.21 -10.26 16 23 C -0.06 -1.90 9.69 22.25 0.22 -1.69 16 24 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.06 0.73 6.92 -2.38 -0.02 0.72 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.93 7.13 -2.39 -0.02 0.91 16 31 H 0.40 3.78 9.12 -74.05 -0.68 3.11 16 32 H 0.10 1.76 8.08 -2.39 -0.02 1.75 16 33 H 0.11 1.77 7.08 -2.39 -0.02 1.76 16 34 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.29 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.11 5.29 5.64 -2.91 -0.02 5.28 16 38 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -69.07 332.22 3.15 -65.93 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.39 Total: 17.61 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 3.85 Total: -41.97 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.30 Total: -54.95 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -2.23 Total: -26.16 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.96 Total: 47.45 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -1.13 Total: -7.90 kcal Total: -69.07 3.15 -65.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742454170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.538 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds