Wall clock time and date at job start Tue Mar 31 2020 05:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39429 * 120.23694 * 177.64401 * 3 2 1 5 5 C 1.38037 * 120.01435 * 180.02562 * 4 3 2 6 6 C 1.38578 * 120.51111 * 0.02562 * 5 4 3 7 7 C 1.37925 * 120.48638 * 359.74228 * 6 5 4 8 8 C 1.39728 * 119.96799 * 0.51368 * 7 6 5 9 9 C 1.46935 * 120.25350 * 179.76711 * 8 7 6 10 10 C 1.35080 * 119.99403 * 49.08090 * 9 8 7 11 11 C 1.46256 * 120.00451 * 9.87659 * 10 9 8 12 12 O 1.21759 * 119.99932 * 5.68604 * 11 10 9 13 13 N 1.34776 * 120.00210 * 185.68132 * 11 10 9 14 14 C 1.36609 * 120.00213 * 175.19108 * 13 11 10 15 15 H 1.08002 * 119.99720 * 16.78610 * 14 13 11 16 16 C 1.39196 * 120.00335 * 196.78613 * 14 13 11 17 17 N 1.31278 * 120.00007 * 12.00478 * 16 14 13 18 18 Si 1.86804 * 120.00192 * 192.00784 * 16 14 13 19 19 H 1.48501 * 109.47101 * 60.00137 * 18 16 14 20 20 H 1.48498 * 109.46767 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47074 * 300.00188 * 18 16 14 22 22 C 1.46500 * 119.99679 * 354.91691 * 13 11 10 23 23 C 1.52994 * 117.50133 * 309.67961 * 22 13 11 24 24 C 1.52999 * 60.00263 * 252.51158 * 23 22 13 25 25 H 1.08003 * 119.98934 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.74337 * 180.02562 * 5 4 3 27 27 H 1.08001 * 119.75458 * 179.97438 * 6 5 4 28 28 H 1.07997 * 120.02018 * 180.27171 * 7 6 5 29 29 H 1.07998 * 120.00123 * 229.08823 * 9 8 7 30 30 H 1.08008 * 119.99576 * 189.87524 * 10 9 8 31 31 H 0.96993 * 119.99826 * 179.97438 * 17 16 14 32 32 H 1.08997 * 115.55028 * 95.39405 * 22 13 11 33 33 H 1.09000 * 117.49802 * 0.02562 * 23 22 13 34 34 H 1.09004 * 117.49900 * 145.02060 * 23 22 13 35 35 H 1.08996 * 117.49792 * 252.50783 * 24 23 22 36 36 H 1.09007 * 117.51381 * 107.48082 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 1.2045 -0.0495 5 6 4.6499 1.1998 -0.0498 6 6 5.3494 0.0044 -0.0017 7 6 4.6765 -1.1983 0.0526 8 6 3.2794 -1.2173 0.0484 9 6 2.5562 -2.4953 0.1009 10 6 2.8878 -3.4213 1.0268 11 6 3.8098 -3.0765 2.1085 12 8 4.1975 -1.9293 2.2355 13 7 4.2303 -4.0285 2.9648 14 6 5.1661 -3.7288 3.9137 15 1 5.3712 -2.6982 4.1633 16 6 5.8555 -4.7515 4.5590 17 7 5.7860 -5.9801 4.1018 18 14 6.8795 -4.3758 6.0755 19 1 6.0064 -3.8082 7.1342 20 1 7.5079 -5.6268 6.5708 21 1 7.9377 -3.3939 5.7274 22 6 3.6792 -5.3834 2.8818 23 6 2.1563 -5.5257 2.8462 24 6 2.9320 -5.9183 4.1052 25 1 2.7328 2.1410 -0.0876 26 1 5.1890 2.1349 -0.0879 27 1 6.4294 0.0149 -0.0030 28 1 5.2292 -2.1252 0.0943 29 1 1.7598 -2.6943 -0.6008 30 1 2.4720 -4.4164 0.9683 31 1 6.2667 -6.6927 4.5512 32 1 4.2652 -6.0944 2.2995 33 1 1.5643 -4.6112 2.8841 34 1 1.7400 -6.3304 2.2401 35 1 3.0260 -6.9812 4.3273 36 1 2.8507 -5.2622 4.9719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743893134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:44 Heat of formation + Delta-G solvation = 89.040161 kcal Electronic energy + Delta-G solvation = -21377.119795 eV Core-core repulsion = 18214.789482 eV Total energy + Delta-G solvation = -3162.330313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.50361 -38.54293 -36.26694 -35.98043 -33.71091 -32.79734 -31.27538 -30.90006 -29.34357 -25.64185 -23.58671 -23.16683 -21.88940 -21.53975 -20.61250 -18.63648 -17.88682 -17.10993 -16.36311 -15.29308 -15.16135 -15.08049 -14.37086 -14.23963 -14.00512 -13.80406 -13.33297 -13.10379 -12.79775 -12.74032 -12.47569 -12.40141 -12.00632 -11.78734 -11.33937 -11.19893 -11.03611 -10.84200 -10.73778 -10.51335 -10.46562 -9.97982 -9.62703 -9.26221 -9.00347 -8.65032 -8.41118 -7.86969 -7.57779 -6.47143 -3.91892 1.02053 1.50523 2.29131 2.94134 3.13341 3.16323 3.20139 3.33159 3.99647 4.18749 4.27378 4.35301 4.59336 4.70498 5.06758 5.09365 5.21000 5.34745 5.49562 5.65354 5.70271 5.81811 5.88898 5.94205 6.09331 6.16699 6.19989 6.34336 6.52826 6.60834 6.64686 6.74394 6.83890 6.87773 6.97872 7.14314 7.25339 7.40667 7.76438 7.96780 8.36728 9.06640 9.28482 9.90550 10.53997 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.005579 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.662719 B = 5017.700489 C = 5960.407741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.271 3.729 3 C -0.039 4.039 4 C -0.087 4.087 5 C -0.126 4.126 6 C -0.100 4.100 7 C -0.037 4.037 8 C 0.027 3.973 9 C -0.119 4.119 10 C -0.142 4.142 11 C 0.451 3.549 12 O -0.578 6.578 13 N -0.399 5.399 14 C -0.302 4.302 15 H 0.106 0.894 16 C 0.038 3.962 17 N -0.860 5.860 18 Si 0.925 3.075 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.132 3.868 23 C -0.226 4.226 24 C -0.148 4.148 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.271 0.729 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 3.273 -6.818 7.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.043 4.043 3 C -0.043 4.043 4 C -0.108 4.108 5 C -0.144 4.144 6 C -0.119 4.119 7 C -0.056 4.056 8 C 0.024 3.976 9 C -0.140 4.140 10 C -0.163 4.163 11 C 0.243 3.757 12 O -0.466 6.466 13 N -0.114 5.114 14 C -0.430 4.430 15 H 0.124 0.876 16 C -0.168 4.168 17 N -0.496 5.496 18 Si 0.752 3.248 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.196 1.196 22 C 0.027 3.973 23 C -0.264 4.264 24 C -0.186 4.186 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.514 3.576 -6.628 7.940 hybrid contribution 0.874 -0.283 1.078 1.416 sum -1.640 3.294 -5.550 6.659 Atomic orbital electron populations 1.81162 1.12160 1.08213 1.10246 1.25773 0.92770 0.92913 0.92879 1.16025 0.83786 0.94449 1.10021 1.20811 0.94339 0.95719 0.99906 1.20923 0.93403 0.98088 1.02017 1.21122 0.99920 0.92310 0.98529 1.21056 0.92243 0.98376 0.93917 1.18764 0.93239 0.91025 0.94579 1.21965 0.99300 0.92805 0.99947 1.23647 0.98260 0.99088 0.95340 1.17841 0.86941 0.86125 0.84783 1.90707 1.62099 1.18934 1.74817 1.43191 1.33741 1.07021 1.27447 1.19701 1.14242 0.94917 1.14097 0.87640 1.25326 0.97370 0.94866 0.99272 1.69846 1.40631 1.00539 1.38621 0.86002 0.79780 0.77826 0.81238 1.19845 1.20817 1.19629 1.21234 0.87963 0.86444 1.01647 1.23638 0.96156 1.02855 1.03740 1.22793 1.02584 1.00663 0.92565 0.86016 0.85982 0.86018 0.85731 0.85820 0.85289 0.91851 0.86499 0.89464 0.89085 0.89479 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.88 18.54 41.84 0.78 -7.11 16 2 C 0.27 4.52 14.44 -22.47 -0.32 4.20 16 3 C -0.04 -0.63 5.77 -106.43 -0.61 -1.24 16 4 C -0.09 -1.20 9.74 -39.21 -0.38 -1.58 16 5 C -0.13 -1.65 10.02 -39.53 -0.40 -2.05 16 6 C -0.10 -1.47 10.02 -39.57 -0.40 -1.86 16 7 C -0.04 -0.64 6.71 -39.14 -0.26 -0.90 16 8 C 0.03 0.46 4.38 -104.72 -0.46 0.00 16 9 C -0.12 -1.99 8.88 -37.19 -0.33 -2.32 16 10 C -0.14 -2.63 8.35 -37.48 -0.31 -2.94 16 11 C 0.45 10.28 6.67 -13.04 -0.09 10.20 16 12 O -0.58 -14.37 11.95 5.14 0.06 -14.31 16 13 N -0.40 -9.52 2.93 -109.37 -0.32 -9.84 16 14 C -0.30 -7.81 9.28 -15.07 -0.14 -7.95 16 15 H 0.11 2.89 7.28 -52.49 -0.38 2.51 16 16 C 0.04 0.92 5.01 -17.43 -0.09 0.83 16 17 N -0.86 -20.83 10.19 55.51 0.57 -20.26 16 18 Si 0.93 19.57 29.57 -169.99 -5.03 14.54 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C 0.13 2.77 3.48 -67.93 -0.24 2.53 16 23 C -0.23 -3.91 7.87 -26.73 -0.21 -4.12 16 24 C -0.15 -2.89 9.04 -26.73 -0.24 -3.14 16 25 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 26 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.12 2.24 7.47 -52.49 -0.39 1.85 16 29 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.13 2.12 5.44 -52.48 -0.29 1.84 16 31 H 0.27 6.28 8.31 -40.82 -0.34 5.95 16 32 H 0.12 2.54 7.63 -51.93 -0.40 2.15 16 33 H 0.09 1.56 7.39 -51.93 -0.38 1.18 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -28.08 314.33 -7.62 -35.70 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -3.93 Total: 6.87 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -4.48 Total: -10.34 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 1.02 Total: -37.21 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.06 Total: -14.31 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.08 -7.62 -35.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743893134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.741 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds