Wall clock time and date at job start Tue Mar 31 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86807 * 119.99767 * 2 1 4 4 H 1.48498 * 109.47096 * 270.00197 * 3 2 1 5 5 H 1.48499 * 109.47028 * 30.00506 * 3 2 1 6 6 H 1.48503 * 109.47002 * 149.99978 * 3 2 1 7 7 C 1.38604 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99527 * 0.02562 * 7 2 1 9 9 O 1.34812 * 120.00501 * 180.02562 * 7 2 1 10 10 C 1.35658 * 117.00301 * 185.05673 * 9 7 2 11 11 C 1.39081 * 119.90690 * 354.44539 * 10 9 7 12 12 C 1.37715 * 120.08555 * 180.02562 * 11 10 9 13 13 C 1.39823 * 119.91392 * 0.02562 * 12 11 10 14 14 C 1.47329 * 120.09405 * 180.02562 * 13 12 11 15 15 N 1.29895 * 120.00417 * 179.97438 * 14 13 12 16 16 N 1.40098 * 120.00111 * 179.97438 * 15 14 13 17 17 C 1.39506 * 120.00153 * 179.97438 * 16 15 14 18 18 C 1.38995 * 120.08544 * 180.02562 * 17 16 15 19 19 C 1.38077 * 119.91788 * 179.97438 * 18 17 16 20 20 C 1.38308 * 120.08423 * 359.97438 * 19 18 17 21 21 C 1.38311 * 120.16328 * 359.97438 * 20 19 18 22 22 C 1.38074 * 120.08200 * 0.02562 * 21 20 19 23 23 C 1.39829 * 119.82153 * 0.26658 * 13 12 11 24 24 C 1.37720 * 119.90451 * 359.45153 * 23 13 12 25 25 H 0.96998 * 120.00247 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.95847 * 0.02562 * 11 10 9 27 27 H 1.08003 * 120.04428 * 179.97438 * 12 11 10 28 28 H 1.08005 * 119.99717 * 359.97438 * 14 13 12 29 29 H 0.96993 * 120.00247 * 0.02562 * 16 15 14 30 30 H 1.08002 * 120.04296 * 359.70186 * 18 17 16 31 31 H 1.08001 * 119.95662 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.91629 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.95601 * 179.97438 * 21 20 19 34 34 H 1.08008 * 120.03682 * 179.97438 * 22 21 20 35 35 H 1.07995 * 120.04858 * 179.70362 * 23 13 12 36 36 H 1.08008 * 119.95191 * 180.26907 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4473 2.6527 0.7001 6 1 3.5474 1.4403 0.7001 7 6 2.0090 -1.2003 -0.0005 8 1 1.4690 -2.1356 -0.0014 9 8 3.3571 -1.2003 0.0000 10 6 3.9731 -2.4042 -0.1071 11 6 3.2188 -3.5726 -0.0944 12 6 3.8403 -4.7968 -0.2024 13 6 5.2316 -4.8641 -0.3243 14 6 5.9006 -6.1716 -0.4407 15 7 7.1932 -6.2320 -0.5544 16 7 7.8293 -7.4754 -0.6644 17 6 9.2175 -7.5403 -0.7871 18 6 9.8504 -8.7729 -0.8969 19 6 11.2244 -8.8331 -1.0187 20 6 11.9709 -7.6688 -1.0320 21 6 11.3446 -6.4404 -0.9239 22 6 9.9710 -6.3723 -0.8019 23 6 5.9868 -3.6873 -0.3305 24 6 5.3571 -2.4668 -0.2279 25 1 -0.4850 0.8400 0.0004 26 1 2.1443 -3.5199 0.0002 27 1 3.2540 -5.7037 -0.1921 28 1 5.3163 -7.0798 -0.4314 29 1 7.3046 -8.2911 -0.6561 30 1 9.2685 -9.6827 -0.8826 31 1 11.7169 -9.7905 -1.1037 32 1 13.0456 -7.7191 -1.1269 33 1 11.9308 -5.5334 -0.9343 34 1 9.4826 -5.4126 -0.7172 35 1 7.0620 -3.7352 -0.4197 36 1 5.9394 -1.5571 -0.2370 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744535845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:04 Heat of formation + Delta-G solvation = 68.571961 kcal Electronic energy + Delta-G solvation = -19531.377222 eV Core-core repulsion = 16368.159341 eV Total energy + Delta-G solvation = -3163.217881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.43951 -39.24290 -37.35845 -36.18670 -33.05249 -32.44947 -30.94997 -30.45379 -29.64206 -27.58004 -25.54682 -23.32296 -22.50564 -22.20742 -21.47845 -19.99229 -18.07722 -17.79113 -17.41841 -16.67511 -16.08145 -15.14908 -14.82858 -14.33915 -14.11244 -14.07078 -13.91510 -13.82636 -13.68321 -13.41315 -12.80851 -12.51247 -12.39714 -12.32487 -11.63717 -11.51133 -11.32815 -11.17724 -10.94771 -10.81655 -10.28919 -10.00522 -9.91440 -9.50823 -9.01988 -8.96485 -8.40540 -7.86330 -7.02766 -6.55184 -4.20225 1.14027 1.35009 1.69819 2.07934 2.68196 2.88140 3.16162 3.19888 3.33441 3.84387 4.13508 4.46302 4.70230 4.73889 4.88140 4.89893 4.98892 5.08425 5.12356 5.37917 5.46926 5.55427 5.61915 5.72516 5.88649 6.01252 6.04304 6.22846 6.36032 6.42277 6.51589 6.56652 6.68331 6.74680 6.95915 7.09907 7.15049 7.28806 7.46270 7.66653 7.89319 8.28872 8.78888 9.39295 10.51358 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040637 B = 0.002644 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.863394 B =10585.642750 C =11259.981625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.110 0.890 9 O -0.207 6.207 10 C 0.174 3.826 11 C -0.228 4.228 12 C -0.039 4.039 13 C -0.157 4.157 14 C 0.133 3.867 15 N -0.269 5.269 16 N -0.591 5.591 17 C 0.226 3.774 18 C -0.194 4.194 19 C -0.080 4.080 20 C -0.176 4.176 21 C -0.082 4.082 22 C -0.163 4.163 23 C -0.032 4.032 24 C -0.200 4.200 25 H 0.282 0.718 26 H 0.138 0.862 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.382 0.618 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.008 -14.135 -1.416 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.127 0.873 9 O -0.109 6.109 10 C 0.119 3.881 11 C -0.247 4.247 12 C -0.060 4.060 13 C -0.161 4.161 14 C -0.075 4.075 15 N -0.075 5.075 16 N -0.310 5.310 17 C 0.125 3.875 18 C -0.217 4.217 19 C -0.099 4.099 20 C -0.196 4.196 21 C -0.101 4.101 22 C -0.185 4.185 23 C -0.052 4.052 24 C -0.219 4.219 25 H 0.092 0.908 26 H 0.155 0.845 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.220 0.780 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.732 -13.214 -1.438 21.369 hybrid contribution -0.901 -0.421 0.029 0.995 sum 15.831 -13.635 -1.409 20.941 Atomic orbital electron populations 1.69649 1.05627 1.28833 1.46667 1.24511 0.95080 0.99051 0.95322 0.86166 0.80388 0.81180 0.79150 1.19699 1.20621 1.18193 1.20825 0.76713 0.96851 1.52199 0.87274 1.83546 1.22860 1.26116 1.78420 1.19325 0.91749 0.85388 0.91621 1.21168 1.01295 0.91550 1.10676 1.20837 0.92530 0.97097 0.95491 1.17840 0.92655 0.89938 1.15662 1.24198 0.90294 0.97280 0.95708 1.74570 1.11543 1.05134 1.16279 1.45419 1.04024 1.03523 1.78069 1.17547 0.81161 0.94132 0.94633 1.20545 0.95218 0.95366 1.10606 1.20786 0.92876 0.98241 0.97971 1.20947 0.99612 0.92585 1.06442 1.21000 0.94012 0.97722 0.97364 1.20823 0.93551 0.97883 1.06234 1.20836 0.99002 0.90636 0.94725 1.20184 0.91789 0.98083 1.11872 0.90790 0.84474 0.86677 0.87710 0.77984 0.86415 0.86211 0.86547 0.86105 0.84927 0.85833 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.16 13.96 55.48 0.77 -23.39 16 2 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.81 28.62 -169.99 -4.86 15.95 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.39 -10.47 9.94 30.87 0.31 -10.17 16 8 H 0.11 2.96 5.42 -52.49 -0.28 2.68 16 9 O -0.21 -5.18 8.58 0.38 0.00 -5.18 16 10 C 0.17 3.79 6.65 -38.96 -0.26 3.53 16 11 C -0.23 -4.53 9.15 -39.46 -0.36 -4.90 16 12 C -0.04 -0.64 9.78 -39.18 -0.38 -1.02 16 13 C -0.16 -2.52 5.87 -105.01 -0.62 -3.13 16 14 C 0.13 1.81 10.75 -14.67 -0.16 1.66 16 15 N -0.27 -3.83 9.44 32.15 0.30 -3.53 16 16 N -0.59 -7.29 6.45 32.41 0.21 -7.08 16 17 C 0.23 2.80 6.72 -83.80 -0.56 2.24 16 18 C -0.19 -2.00 9.90 -39.36 -0.39 -2.39 16 19 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 20 C -0.18 -1.70 10.04 -39.53 -0.40 -2.10 16 21 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 22 C -0.16 -2.06 9.51 -39.36 -0.37 -2.44 16 23 C -0.03 -0.54 9.57 -39.18 -0.37 -0.91 16 24 C -0.20 -3.79 9.97 -39.46 -0.39 -4.19 16 25 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.14 2.85 5.62 -52.49 -0.29 2.55 16 27 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 28 H 0.11 1.13 8.03 -52.48 -0.42 0.71 16 29 H 0.38 3.76 8.66 -182.61 -1.58 2.17 16 30 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.79 7.36 -52.48 -0.39 1.40 16 35 H 0.12 1.91 7.55 -52.49 -0.40 1.51 16 36 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 321.08 15.07 4.84 4.84 Total: -1.00 -28.74 321.08 -8.63 -37.36 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.04 Total: 5.62 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -4.86 Total: -24.59 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 1.29 Total: -34.00 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.86 Total: 15.95 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.74 -8.63 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744535845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.935 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds