Wall clock time and date at job start Tue Mar 31 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38672 * 120.30952 * 2 1 4 4 C 1.38544 * 118.49683 * 180.02562 * 3 2 1 5 5 C 1.39425 * 119.05261 * 359.97438 * 4 3 2 6 6 C 1.47967 * 119.73402 * 179.97438 * 5 4 3 7 7 O 1.21559 * 119.99374 * 354.13716 * 6 5 4 8 8 N 1.34773 * 120.00303 * 174.14078 * 6 5 4 9 9 C 1.36848 * 119.99855 * 3.28819 * 8 6 5 10 10 H 1.07994 * 120.00586 * 304.50237 * 9 8 6 11 11 C 1.39035 * 119.99701 * 124.49616 * 9 8 6 12 12 N 1.31339 * 120.00044 * 181.98644 * 11 9 8 13 13 Si 1.86801 * 119.99903 * 1.99096 * 11 9 8 14 14 H 1.48499 * 109.47338 * 95.18758 * 13 11 9 15 15 H 1.48505 * 109.46875 * 215.18940 * 13 11 9 16 16 H 1.48498 * 109.47016 * 335.18507 * 13 11 9 17 17 C 1.39701 * 120.00010 * 183.29798 * 8 6 5 18 18 C 1.38986 * 120.08082 * 351.66609 * 17 8 6 19 19 C 1.38081 * 119.91524 * 179.72334 * 18 17 8 20 20 C 1.38308 * 120.08367 * 0.55655 * 19 18 17 21 21 C 1.38316 * 120.15756 * 359.72108 * 20 19 18 22 22 C 1.38071 * 120.08080 * 359.97438 * 21 20 19 23 23 N 1.32795 * 120.53514 * 359.97438 * 5 4 3 24 24 C 1.31526 * 121.62911 * 0.02562 * 23 5 4 25 25 H 1.09003 * 109.47166 * 90.00254 * 1 2 3 26 26 H 1.09006 * 109.46659 * 209.99602 * 1 2 3 27 27 H 1.08999 * 109.47413 * 329.99627 * 1 2 3 28 28 H 1.08002 * 120.75107 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.46690 * 179.72994 * 4 3 2 30 30 H 0.97001 * 120.00001 * 185.00182 * 12 11 9 31 31 H 1.07996 * 120.03820 * 359.97438 * 18 17 8 32 32 H 1.08008 * 119.95252 * 180.29512 * 19 18 17 33 33 H 1.07995 * 119.92114 * 179.69960 * 20 19 18 34 34 H 1.08000 * 119.95262 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.04250 * 179.97438 * 22 21 20 36 36 H 1.08004 * 119.54497 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1972 0.0000 4 6 3.5916 1.1533 -0.0005 5 6 4.2297 -0.0863 -0.0005 6 6 5.7080 -0.1507 -0.0017 7 8 6.3606 0.8691 -0.1102 8 7 6.3309 -1.3399 0.1175 9 6 5.5975 -2.4940 0.1718 10 1 4.8263 -2.6091 0.9190 11 6 5.8451 -3.5183 -0.7351 12 7 5.1154 -4.6100 -0.7081 13 14 7.2159 -3.3419 -1.9919 14 1 8.4487 -3.9874 -1.4736 15 1 6.8105 -3.9967 -3.2616 16 1 7.4779 -1.9013 -2.2395 17 6 7.7251 -1.3944 0.1857 18 6 8.4790 -0.2492 -0.0418 19 6 9.8567 -0.3057 0.0321 20 6 10.4870 -1.5024 0.3209 21 6 9.7402 -2.6454 0.5422 22 6 8.3620 -2.5951 0.4761 23 7 3.5216 -1.2097 0.0005 24 6 2.2064 -1.1960 0.0011 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6842 2.1423 -0.0004 29 1 4.1683 2.0664 -0.0049 30 1 5.3337 -5.3538 -1.2912 31 1 7.9877 0.6846 -0.2721 32 1 10.4430 0.5850 -0.1399 33 1 11.5649 -1.5447 0.3733 34 1 10.2358 -3.5783 0.7670 35 1 7.7795 -3.4880 0.6486 36 1 1.6641 -2.1300 0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753124355.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:19 Heat of formation + Delta-G solvation = 68.366395 kcal Electronic energy + Delta-G solvation = -21778.696806 eV Core-core repulsion = 18615.470011 eV Total energy + Delta-G solvation = -3163.226795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42775 -39.28272 -37.38868 -35.20434 -33.25495 -32.07631 -31.44246 -30.12444 -29.33057 -27.16547 -25.19694 -23.30459 -22.95013 -21.73397 -21.12600 -19.66033 -18.33483 -16.84129 -16.15118 -15.75649 -15.45227 -14.99107 -14.72421 -14.48093 -13.96293 -13.69504 -13.66368 -13.27801 -12.83784 -12.70765 -12.56194 -12.51978 -12.38732 -12.16702 -11.99918 -11.38969 -11.31567 -11.00554 -10.60862 -10.28876 -10.04827 -9.49513 -9.35967 -8.87891 -8.74496 -8.51801 -8.31607 -8.03894 -7.02317 -6.33980 -4.21380 1.10381 1.73804 2.10789 2.16793 3.21393 3.30439 3.40807 3.49861 3.99459 4.19771 4.44381 4.66151 4.80841 5.00277 5.11557 5.14786 5.25245 5.37829 5.60537 5.61950 5.64814 5.71780 5.81604 5.89054 6.06517 6.19683 6.29147 6.35832 6.41466 6.50567 6.58813 6.79714 7.07540 7.16608 7.26729 7.28715 7.38642 7.81820 8.03044 8.40331 8.54960 8.90264 9.17351 9.39544 10.66690 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021224 B = 0.006697 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.921136 B = 4179.989818 C = 5154.500681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.097 4.097 4 C -0.123 4.123 5 C 0.092 3.908 6 C 0.536 3.464 7 O -0.559 6.559 8 N -0.385 5.385 9 C -0.322 4.322 10 H 0.127 0.873 11 C 0.081 3.919 12 N -0.856 5.856 13 Si 0.860 3.140 14 H -0.257 1.257 15 H -0.292 1.292 16 H -0.261 1.261 17 C 0.154 3.846 18 C -0.181 4.181 19 C -0.111 4.111 20 C -0.169 4.169 21 C -0.107 4.107 22 C -0.153 4.153 23 N -0.381 5.381 24 C 0.087 3.913 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.274 0.726 31 H 0.179 0.821 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.141 0.859 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 6.533 1.219 7.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C -0.123 4.123 4 C -0.144 4.144 5 C -0.046 4.046 6 C 0.328 3.672 7 O -0.443 6.443 8 N -0.092 5.092 9 C -0.449 4.449 10 H 0.144 0.856 11 C -0.127 4.127 12 N -0.490 5.490 13 Si 0.687 3.313 14 H -0.182 1.182 15 H -0.219 1.219 16 H -0.185 1.185 17 C 0.058 3.942 18 C -0.201 4.201 19 C -0.129 4.129 20 C -0.188 4.188 21 C -0.126 4.126 22 C -0.174 4.174 23 N -0.090 5.090 24 C -0.073 4.073 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.195 0.805 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.159 0.841 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.837 6.044 1.049 6.759 hybrid contribution 0.210 0.458 -0.765 0.916 sum -2.627 6.502 0.284 7.018 Atomic orbital electron populations 1.20708 0.90725 1.02755 1.02284 1.21175 0.97233 0.94708 1.00662 1.21295 0.93600 0.97904 0.99498 1.22067 0.94729 0.98930 0.98642 1.21053 0.94285 0.89232 1.00062 1.18477 0.86352 0.83419 0.78906 1.90293 1.64445 1.35875 1.53704 1.41333 1.02529 1.07337 1.57963 1.19264 1.17051 0.91122 1.17477 0.85607 1.25374 0.96196 0.95700 0.95437 1.69600 1.36369 1.04705 1.38372 0.87168 0.82756 0.80223 0.81144 1.18161 1.21915 1.18496 1.18519 0.84567 0.94226 0.96903 1.22764 0.93765 1.01066 1.02467 1.21014 0.94552 0.97136 1.00225 1.20933 0.98834 0.93514 1.05507 1.20830 0.93416 0.97857 1.00451 1.21074 0.94605 0.98310 1.03376 1.68942 1.06310 1.28217 1.05542 1.23103 0.90740 0.97064 0.96388 0.91132 0.91203 0.91738 0.85135 0.84253 0.91532 0.80509 0.86910 0.87312 0.86775 0.84134 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.03 36.00 0.36 -0.72 16 2 C -0.14 -1.93 5.91 -104.35 -0.62 -2.54 16 3 C -0.10 -1.38 9.85 -39.31 -0.39 -1.77 16 4 C -0.12 -2.13 9.63 -39.03 -0.38 -2.51 16 5 C 0.09 1.98 6.66 -83.02 -0.55 1.42 16 6 C 0.54 12.89 7.56 -12.28 -0.09 12.80 16 7 O -0.56 -13.36 12.75 5.31 0.07 -13.29 16 8 N -0.38 -9.71 2.28 -59.94 -0.14 -9.84 16 9 C -0.32 -8.45 6.72 -15.02 -0.10 -8.55 16 10 H 0.13 3.50 6.79 -52.49 -0.36 3.15 16 11 C 0.08 2.17 4.63 -17.47 -0.08 2.08 16 12 N -0.86 -23.39 13.95 55.50 0.77 -22.62 16 13 Si 0.86 21.50 23.90 -169.99 -4.06 17.44 16 14 H -0.26 -6.11 6.24 56.52 0.35 -5.76 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.26 -6.89 6.49 56.52 0.37 -6.52 16 17 C 0.15 3.72 4.14 -83.72 -0.35 3.37 16 18 C -0.18 -4.07 9.03 -39.36 -0.36 -4.42 16 19 C -0.11 -2.12 10.04 -39.61 -0.40 -2.52 16 20 C -0.17 -3.07 10.04 -39.53 -0.40 -3.47 16 21 C -0.11 -2.10 9.83 -39.61 -0.39 -2.49 16 22 C -0.15 -3.50 5.64 -39.37 -0.22 -3.72 16 23 N -0.38 -8.29 6.59 -9.81 -0.06 -8.35 16 24 C 0.09 1.52 10.86 -17.57 -0.19 1.33 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.14 2.26 7.65 -52.49 -0.40 1.85 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.18 4.10 4.57 -56.04 -0.26 3.84 16 32 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 35 H 0.14 3.36 5.72 -52.49 -0.30 3.06 16 36 H 0.15 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 297.54 15.07 4.48 4.48 Total: -1.00 -29.86 297.54 -6.99 -36.85 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.91 Total: 7.05 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -4.14 Total: -11.72 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.57 Total: -40.81 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.07 Total: -13.29 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.06 Total: 17.44 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.86 -6.99 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753124355.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.215 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds