Wall clock time and date at job start Tue Mar 31 2020 05:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48495 * 109.47294 * 275.28828 * 3 2 1 5 5 H 1.48500 * 109.47270 * 35.28855 * 3 2 1 6 6 H 1.48509 * 109.47092 * 155.28865 * 3 2 1 7 7 C 1.39945 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00151 * 346.60887 * 7 2 1 9 9 C 1.41393 * 120.00136 * 166.60704 * 7 2 1 10 10 C 1.40740 * 120.24720 * 331.24473 * 9 7 2 11 11 C 1.37590 * 119.74807 * 180.31940 * 10 9 7 12 12 C 1.38659 * 120.24728 * 359.65653 * 11 10 9 13 13 C 1.38613 * 120.50322 * 0.02880 * 12 11 10 14 14 C 1.37636 * 120.24696 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.12691 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.47019 * 264.99554 * 15 14 13 17 17 O 1.21288 * 119.99990 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99894 * 179.97438 * 16 15 14 19 19 C 1.39948 * 119.99784 * 185.05534 * 18 16 15 20 20 C 1.39281 * 120.48953 * 32.82980 * 19 18 16 21 21 C 1.38501 * 118.36438 * 180.19595 * 20 19 18 22 22 C 1.38275 * 119.23207 * 359.52791 * 21 20 19 23 23 N 1.31852 * 120.92056 * 0.25125 * 22 21 20 24 24 C 1.31817 * 121.79693 * 0.02562 * 23 22 21 25 25 H 0.97003 * 119.99768 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.12130 * 0.02562 * 10 9 7 27 27 H 1.08006 * 119.87855 * 179.68448 * 11 10 9 28 28 H 1.08007 * 119.75000 * 180.02562 * 12 11 10 29 29 H 1.08001 * 119.87593 * 179.97438 * 13 12 11 30 30 H 1.09009 * 109.47223 * 145.00024 * 15 14 13 31 31 H 1.08994 * 109.47386 * 25.00044 * 15 14 13 32 32 H 0.96998 * 120.00157 * 5.06331 * 18 16 15 33 33 H 1.08002 * 120.81601 * 359.97438 * 20 19 18 34 34 H 1.07996 * 120.38645 * 179.80448 * 21 20 19 35 35 H 1.07998 * 119.54223 * 180.23232 * 22 21 20 36 36 H 1.08000 * 119.67108 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3780 2.1109 -1.3941 5 1 1.5001 2.6178 0.8088 6 1 3.5913 1.4104 0.5853 7 6 2.0080 -1.2120 0.0005 8 1 1.4900 -2.1345 0.2176 9 6 3.3931 -1.2288 -0.2831 10 6 3.9577 -0.2466 -1.1181 11 6 5.3056 -0.2766 -1.3926 12 6 6.1083 -1.2653 -0.8442 13 6 5.5642 -2.2338 -0.0151 14 6 4.2182 -2.2240 0.2722 15 6 3.6295 -3.2786 1.1734 16 6 3.0750 -4.4024 0.3361 17 8 3.1510 -4.3520 -0.8733 18 7 2.4957 -5.4638 0.9314 19 6 2.0763 -6.5549 0.1619 20 6 2.7746 -6.9197 -0.9867 21 6 2.3185 -8.0042 -1.7175 22 6 1.1997 -8.6899 -1.2813 23 7 0.5635 -8.3219 -0.1867 24 6 0.9608 -7.2927 0.5348 25 1 -0.4850 0.8401 -0.0004 26 1 3.3344 0.5248 -1.5457 27 1 5.7402 0.4731 -2.0373 28 1 7.1655 -1.2810 -1.0647 29 1 6.1987 -2.9995 0.4062 30 1 2.8290 -2.8411 1.7701 31 1 4.4049 -3.6661 1.8341 32 1 2.3694 -5.4714 1.8930 33 1 3.6482 -6.3682 -1.3017 34 1 2.8332 -8.3135 -2.6151 35 1 0.8419 -9.5386 -1.8452 36 1 0.4136 -7.0211 1.4254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776773258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:27 Heat of formation + Delta-G solvation = 19.912572 kcal Electronic energy + Delta-G solvation = -21045.080459 eV Core-core repulsion = 17879.752548 eV Total energy + Delta-G solvation = -3165.327911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58815 -39.05895 -37.67783 -34.75873 -33.62706 -32.28432 -31.83428 -30.41105 -29.86859 -27.02058 -24.95143 -23.74376 -23.08121 -21.51027 -20.62482 -19.53212 -17.76827 -17.37876 -16.79111 -16.69639 -15.77559 -15.74757 -14.97047 -14.40369 -14.11112 -13.95978 -13.79865 -13.58373 -13.40961 -12.89504 -12.71058 -12.25660 -12.08180 -11.96218 -11.51314 -11.30931 -10.84895 -10.76724 -10.66110 -10.27017 -9.81217 -9.69441 -9.64627 -9.58491 -9.17943 -9.13258 -8.15395 -7.63165 -7.57198 -6.95597 -4.53080 1.12972 1.37443 2.49605 2.67816 3.04527 3.09875 3.17907 3.29744 3.32812 3.93194 3.95553 4.48120 4.55373 4.88154 4.98559 5.14163 5.21501 5.41771 5.53056 5.63939 5.75163 5.86059 6.02482 6.11052 6.14461 6.20381 6.24730 6.39278 6.51735 6.64191 6.90146 6.91330 7.16055 7.36297 7.57080 7.61782 7.70458 7.84884 7.99861 8.09084 8.30502 8.52282 8.62494 8.77689 10.06310 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.004999 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.398874 B = 5600.017102 C = 6433.461002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.082 3.918 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.240 1.240 7 C -0.440 4.440 8 H 0.088 0.912 9 C 0.109 3.891 10 C -0.233 4.233 11 C -0.078 4.078 12 C -0.243 4.243 13 C -0.067 4.067 14 C -0.173 4.173 15 C -0.071 4.071 16 C 0.515 3.485 17 O -0.498 6.498 18 N -0.681 5.681 19 C 0.115 3.885 20 C -0.084 4.084 21 C -0.151 4.151 22 C 0.067 3.933 23 N -0.468 5.468 24 C 0.067 3.933 25 H 0.285 0.715 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.411 0.589 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -10.000 3.253 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.163 1.163 7 C -0.469 4.469 8 H 0.106 0.894 9 C 0.106 3.894 10 C -0.252 4.252 11 C -0.096 4.096 12 C -0.262 4.262 13 C -0.085 4.085 14 C -0.175 4.175 15 C -0.111 4.111 16 C 0.304 3.696 17 O -0.370 6.370 18 N -0.328 5.328 19 C 0.017 3.983 20 C -0.113 4.113 21 C -0.171 4.171 22 C -0.091 4.091 23 N -0.176 5.176 24 C -0.094 4.094 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.246 0.754 33 H 0.163 0.837 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.654 -10.256 2.667 11.209 hybrid contribution 0.789 1.302 -0.022 1.523 sum 4.443 -8.954 2.645 10.340 Atomic orbital electron populations 1.69671 1.08028 1.30205 1.35550 1.26192 0.94806 1.01774 0.90916 0.86298 0.81248 0.79618 0.78701 1.19925 1.22197 1.16336 1.19444 0.91545 0.95317 1.40578 0.89402 1.17484 0.92903 0.90263 0.88717 1.20929 0.94998 1.03497 1.05748 1.20588 0.93876 0.97133 0.98016 1.20325 0.97900 1.00482 1.07498 1.20425 0.94155 0.96776 0.97133 1.18980 0.92787 1.00479 1.05242 1.20301 1.01080 0.92377 0.97330 1.21500 0.76504 0.81991 0.89601 1.90706 1.54009 1.77682 1.14567 1.43808 1.61672 1.16490 1.10847 1.18898 0.94779 0.89814 0.94777 1.21678 0.99859 0.95443 0.94275 1.22052 0.98269 0.96031 1.00762 1.22615 0.93335 0.99698 0.93469 1.67583 1.29950 1.14041 1.06048 1.22569 0.92813 0.93358 1.00619 0.90464 0.88514 0.88949 0.88941 0.89042 0.87729 0.89735 0.75352 0.83652 0.84711 0.82932 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.52 13.93 55.55 0.77 -20.75 16 2 C 0.08 2.12 5.47 -17.34 -0.09 2.03 16 3 Si 0.91 20.71 24.37 -169.99 -4.14 16.56 16 4 H -0.27 -6.11 6.76 56.52 0.38 -5.73 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.24 -5.50 6.50 56.52 0.37 -5.13 16 7 C -0.44 -11.63 8.63 -37.74 -0.33 -11.95 16 8 H 0.09 2.43 6.94 -52.48 -0.36 2.07 16 9 C 0.11 2.73 5.18 -106.82 -0.55 2.18 16 10 C -0.23 -5.70 6.93 -38.87 -0.27 -5.96 16 11 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 12 C -0.24 -5.06 10.05 -39.29 -0.39 -5.46 16 13 C -0.07 -1.37 9.66 -39.66 -0.38 -1.76 16 14 C -0.17 -3.81 4.43 -103.91 -0.46 -4.27 16 15 C -0.07 -1.26 5.19 -29.03 -0.15 -1.41 16 16 C 0.52 9.43 7.19 -10.98 -0.08 9.35 16 17 O -0.50 -11.23 13.72 5.55 0.08 -11.16 16 18 N -0.68 -9.72 5.35 -9.76 -0.05 -9.77 16 19 C 0.11 1.71 6.31 -83.54 -0.53 1.18 16 20 C -0.08 -1.28 8.77 -39.10 -0.34 -1.62 16 21 C -0.15 -1.91 10.10 -39.47 -0.40 -2.30 16 22 C 0.07 0.83 11.18 -17.53 -0.20 0.63 16 23 N -0.47 -6.66 10.35 -13.09 -0.14 -6.80 16 24 C 0.07 0.91 11.12 -17.33 -0.19 0.72 16 25 H 0.28 6.88 8.30 -40.82 -0.34 6.55 16 26 H 0.10 2.37 4.23 -52.49 -0.22 2.15 16 27 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 28 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 29 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.84 7.13 -51.92 -0.37 1.47 16 31 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.41 4.25 8.82 -40.82 -0.36 3.89 16 33 H 0.15 2.39 6.48 -52.49 -0.34 2.05 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 306.63 15.07 4.62 4.62 Total: -1.00 -31.57 306.63 -7.43 -39.00 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.80 Total: 9.06 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -4.77 Total: -20.76 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.59 Total: -37.32 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.14 Total: 16.56 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.57 -7.43 -39.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776773258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.911 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds