Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 119.99616 * 2 1 4 4 H 1.48495 * 109.47248 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46869 * 120.00431 * 3 2 1 6 6 H 1.48504 * 109.47018 * 240.00450 * 3 2 1 7 7 C 1.39943 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00052 * 154.81921 * 7 2 1 9 9 C 1.41391 * 119.99915 * 334.82042 * 7 2 1 10 10 C 1.40734 * 120.24547 * 334.80859 * 9 7 2 11 11 C 1.37598 * 119.74637 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.25091 * 0.02705 * 11 10 9 13 13 C 1.38611 * 120.49940 * 359.97438 * 12 11 10 14 14 C 1.37643 * 120.24882 * 359.68141 * 13 12 11 15 15 C 1.50705 * 120.13378 * 180.31898 * 14 13 12 16 16 C 1.50700 * 109.46670 * 265.30393 * 15 14 13 17 17 O 1.21705 * 120.00347 * 359.97438 * 16 15 14 18 18 N 1.32306 * 119.99547 * 179.97438 * 16 15 14 19 19 C 1.34667 * 120.00076 * 235.58668 * 18 16 15 20 20 C 1.41187 * 120.66880 * 5.15803 * 19 18 16 21 21 C 1.35353 * 119.26825 * 179.74187 * 20 19 18 22 22 N 1.35431 * 120.67738 * 0.56353 * 21 20 19 23 23 H 0.96995 * 119.27830 * 179.70950 * 22 21 20 24 24 C 1.35434 * 121.43943 * 359.68676 * 22 21 20 25 25 C 1.35347 * 120.68682 * 0.02562 * 24 22 21 26 26 H 0.96998 * 120.00207 * 174.63816 * 1 2 3 27 27 H 1.08005 * 120.12782 * 359.97438 * 10 9 7 28 28 H 1.08008 * 119.87534 * 180.02562 * 11 10 9 29 29 H 1.07993 * 119.75417 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.87901 * 179.97438 * 13 12 11 31 31 H 1.09004 * 109.46779 * 25.29581 * 15 14 13 32 32 H 1.08998 * 109.47391 * 145.29871 * 15 14 13 33 33 H 1.08002 * 120.36359 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.66070 * 180.27277 * 21 20 19 35 35 H 1.08001 * 119.65466 * 180.02562 * 24 22 21 36 36 H 1.07996 * 120.37140 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 0.0006 5 1 3.0959 1.6964 1.2124 6 1 3.0958 1.6966 -1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0110 -1.2562 -0.3985 9 6 1.4019 -2.3785 0.5199 10 6 0.3811 -2.2774 1.4835 11 6 -0.2021 -3.4193 1.9826 12 6 0.2127 -4.6662 1.5402 13 6 1.2172 -4.7778 0.5916 14 6 1.8098 -3.6488 0.0732 15 6 2.8967 -3.7729 -0.9634 16 6 4.2426 -3.7385 -0.2865 17 8 4.3127 -3.6236 0.9231 18 7 5.3481 -3.8333 -1.0072 19 6 6.2506 -4.7943 -0.7326 20 6 5.9834 -5.7741 0.2482 21 6 6.9085 -6.7303 0.4976 22 7 8.0842 -6.7462 -0.1743 23 1 8.7344 -7.4382 0.0237 24 6 8.3718 -5.8172 -1.1169 25 6 7.4855 -4.8389 -1.4157 26 1 -0.4850 -0.8363 -0.0785 27 1 0.0567 -1.3072 1.8299 28 1 -0.9859 -3.3442 2.7219 29 1 -0.2502 -5.5572 1.9377 30 1 1.5327 -5.7540 0.2544 31 1 2.7828 -4.7160 -1.4980 32 1 2.8230 -2.9446 -1.6681 33 1 5.0493 -5.7636 0.7902 34 1 6.7088 -7.4854 1.2434 35 1 9.3183 -5.8574 -1.6355 36 1 7.7199 -4.1010 -2.1685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776843281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = 38.715782 kcal Electronic energy + Delta-G solvation = -20955.461386 eV Core-core repulsion = 17790.948844 eV Total energy + Delta-G solvation = -3164.512542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.77486 -38.87896 -37.37297 -34.64819 -33.69073 -31.82238 -31.63949 -30.52890 -29.05029 -26.77739 -24.84811 -23.89337 -23.33942 -20.77403 -20.24583 -19.41913 -18.78515 -17.53650 -16.70419 -16.36367 -15.25116 -14.95548 -14.67174 -14.56888 -14.27426 -14.11815 -13.91288 -13.64726 -13.04497 -12.70364 -12.15546 -11.94274 -11.87252 -11.54004 -11.25566 -11.05041 -10.81839 -10.68469 -10.31252 -10.24425 -9.86997 -9.69193 -9.48839 -9.20727 -8.79421 -8.51538 -7.52508 -7.36833 -7.25211 -6.95320 -4.24289 0.90590 1.21475 2.67529 2.94025 2.99963 3.03425 3.28760 3.43263 3.51157 3.82825 4.17270 4.30996 4.45419 4.73132 4.87722 5.05672 5.15669 5.47136 5.63104 5.85567 6.00731 6.08214 6.19525 6.32392 6.37187 6.49188 6.61753 6.63126 6.70355 6.87066 7.12517 7.15621 7.36960 7.60196 7.85877 7.99900 8.04371 8.10150 8.20244 8.38284 8.51390 8.97475 9.06352 9.09342 10.22795 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018224 B = 0.005046 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.108666 B = 5547.203098 C = 6753.521966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.040 3.960 3 Si 1.061 2.939 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.074 0.926 9 C 0.115 3.885 10 C -0.218 4.218 11 C -0.088 4.088 12 C -0.255 4.255 13 C -0.074 4.074 14 C -0.181 4.181 15 C -0.070 4.070 16 C 0.493 3.507 17 O -0.512 6.512 18 N -0.624 5.624 19 C 0.293 3.707 20 C -0.239 4.239 21 C 0.123 3.877 22 N -0.594 5.594 23 H 0.418 0.582 24 C 0.117 3.883 25 C -0.193 4.193 26 H 0.298 0.702 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.130 -13.863 -3.107 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.181 4.181 3 Si 0.885 3.115 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.542 4.542 8 H 0.092 0.908 9 C 0.112 3.888 10 C -0.237 4.237 11 C -0.107 4.107 12 C -0.275 4.275 13 C -0.092 4.092 14 C -0.183 4.183 15 C -0.110 4.110 16 C 0.281 3.719 17 O -0.388 6.388 18 N -0.358 5.358 19 C 0.132 3.868 20 C -0.266 4.266 21 C -0.006 4.006 22 N -0.199 5.199 23 H 0.253 0.747 24 C -0.013 4.013 25 C -0.219 4.219 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.185 0.815 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.563 -11.343 -2.936 20.289 hybrid contribution 0.170 -2.384 0.565 2.455 sum 16.733 -13.727 -2.371 21.773 Atomic orbital electron populations 1.70453 1.08163 1.34173 1.29759 1.26944 0.95674 1.04177 0.91312 0.83700 0.75669 0.73981 0.78106 1.19958 1.20114 1.20102 1.20517 1.02775 0.93931 1.36961 0.90774 1.17405 0.90188 0.91877 0.89316 1.21128 1.03567 0.96920 1.02071 1.20569 0.98369 0.93260 0.98478 1.20210 1.04955 0.95692 1.06623 1.20323 0.96462 0.95660 0.96800 1.19203 1.02450 0.93516 1.03143 1.20263 0.90433 1.02160 0.98122 1.21629 0.89683 0.73703 0.86887 1.90728 1.89715 1.41804 1.16540 1.68669 1.06394 1.26091 1.34689 1.18855 0.90019 0.90098 0.87799 1.21880 1.02714 0.98009 1.04029 1.21717 0.85218 0.98611 0.95070 1.40957 1.17136 1.27938 1.33840 0.74719 1.21756 0.99927 0.89065 0.90522 1.20698 0.93516 1.01724 1.05954 0.88801 0.87795 0.89514 0.89636 0.89900 0.91152 0.88624 0.83427 0.81806 0.81486 0.83150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.72 12.32 55.55 0.68 -22.04 16 2 C 0.04 1.11 4.95 -17.34 -0.09 1.02 16 3 Si 1.06 24.00 30.00 -169.99 -5.10 18.90 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 7 C -0.51 -15.01 8.09 -37.74 -0.31 -15.32 16 8 H 0.07 2.21 6.72 -52.49 -0.35 1.85 16 9 C 0.12 3.34 5.31 -106.82 -0.57 2.78 16 10 C -0.22 -6.15 7.93 -38.87 -0.31 -6.45 16 11 C -0.09 -2.26 10.02 -39.66 -0.40 -2.66 16 12 C -0.26 -6.27 10.05 -39.29 -0.39 -6.66 16 13 C -0.07 -1.84 9.66 -39.66 -0.38 -2.22 16 14 C -0.18 -4.85 4.43 -103.91 -0.46 -5.31 16 15 C -0.07 -1.68 5.25 -29.03 -0.15 -1.84 16 16 C 0.49 11.91 5.92 -12.07 -0.07 11.84 16 17 O -0.51 -13.97 15.28 5.18 0.08 -13.89 16 18 N -0.62 -13.17 10.45 -10.39 -0.11 -13.28 16 19 C 0.29 4.74 6.55 -84.38 -0.55 4.18 16 20 C -0.24 -3.37 8.92 -39.49 -0.35 -3.72 16 21 C 0.12 0.97 11.17 -16.99 -0.19 0.78 16 22 N -0.59 -2.77 5.24 -13.04 -0.07 -2.84 16 23 H 0.42 0.14 8.90 -40.82 -0.36 -0.23 16 24 C 0.12 0.67 11.17 -16.99 -0.19 0.48 16 25 C -0.19 -2.10 10.00 -39.49 -0.39 -2.50 16 26 H 0.30 8.65 6.62 -40.82 -0.27 8.38 16 27 H 0.10 3.00 6.46 -52.48 -0.34 2.66 16 28 H 0.09 1.97 8.06 -52.48 -0.42 1.55 16 29 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.07 1.48 8.06 -51.93 -0.42 1.06 16 32 H 0.10 2.37 7.05 -51.93 -0.37 2.01 16 33 H 0.15 2.54 6.41 -52.49 -0.34 2.20 16 34 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.17 0.20 8.06 -52.49 -0.42 -0.22 16 36 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -39.09 312.60 -8.39 -47.48 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.78 Total: 6.54 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -4.81 Total: -25.59 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.51 Total: -38.15 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.08 Total: -13.89 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.10 Total: 18.90 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -39.09 -8.39 -47.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776843281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.194 kcal (2) G-P(sol) polarization free energy of solvation -39.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds