Wall clock time and date at job start Tue Mar 31 2020 05:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99795 * 2 1 4 4 H 1.48506 * 109.46762 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47091 * 299.99840 * 3 2 1 6 6 H 1.48491 * 109.47153 * 59.99973 * 3 2 1 7 7 C 1.37872 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00386 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99957 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47372 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00379 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99747 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00419 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99869 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.46822 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.47115 * 305.00322 * 15 14 13 17 17 O 1.42901 * 109.46769 * 65.00429 * 15 14 13 18 18 C 1.50698 * 109.46975 * 185.00335 * 15 14 13 19 19 C 1.38244 * 119.97167 * 100.00102 * 18 15 14 20 20 C 1.38205 * 120.02298 * 180.02562 * 19 18 15 21 21 C 1.38459 * 119.97412 * 0.24026 * 20 19 18 22 22 F 1.35099 * 120.02759 * 179.72396 * 21 20 19 23 23 C 1.38466 * 119.94836 * 359.48301 * 21 20 19 24 24 C 1.38196 * 119.97140 * 0.53984 * 23 21 20 25 25 H 0.97004 * 119.99773 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46455 * 60.00223 * 9 7 2 27 27 H 1.08999 * 109.47159 * 300.00656 * 9 7 2 28 28 H 0.97003 * 119.99535 * 0.02562 * 10 9 7 29 29 H 0.97003 * 119.99495 * 0.02562 * 13 11 10 30 30 H 1.09002 * 109.46621 * 60.00597 * 14 13 11 31 31 H 1.08994 * 109.47611 * 300.00296 * 14 13 11 32 32 H 0.96700 * 114.00245 * 59.99881 * 17 15 14 33 33 H 1.07999 * 119.98898 * 0.02589 * 19 18 15 34 34 H 1.08002 * 120.00949 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.00962 * 180.25357 * 23 21 20 36 36 H 1.08000 * 119.98525 * 179.74601 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 1.7539 -4.8833 0.0033 12 8 0.5585 -5.1055 0.0026 13 7 2.6297 -5.9077 0.0048 14 6 2.1414 -7.2889 0.0060 15 6 3.3314 -8.2506 0.0068 16 1 3.9845 -8.0212 -0.8351 17 8 4.0597 -8.1061 1.2278 18 6 2.8325 -9.6673 -0.1158 19 6 2.8644 -10.3071 -1.3409 20 6 2.4066 -11.6062 -1.4546 21 6 1.9113 -12.2650 -0.3421 22 9 1.4584 -13.5330 -0.4533 23 6 1.8852 -11.6251 0.8855 24 6 2.3430 -10.3260 0.9967 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5574 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 3.1568 -3.4353 0.0029 29 1 3.5834 -5.7304 0.0057 30 1 1.5363 -7.4611 -0.8842 31 1 1.5354 -7.4593 0.8958 32 1 3.5395 -8.2950 2.0208 33 1 3.2472 -9.7917 -2.2093 34 1 2.4313 -12.1057 -2.4119 35 1 1.5029 -12.1395 1.7547 36 1 2.3190 -9.8252 1.9533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:29 Heat of formation + Delta-G solvation = -107.891983 kcal Electronic energy + Delta-G solvation = -20739.172466 eV Core-core repulsion = 17137.533309 eV Total energy + Delta-G solvation = -3601.639157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.24104 -40.13424 -39.06197 -37.23094 -34.35140 -33.81470 -32.31737 -31.72127 -31.43146 -28.34379 -26.68693 -23.96069 -23.42532 -22.34378 -21.55238 -20.16280 -18.31539 -18.12314 -17.41970 -16.95352 -16.19570 -15.93231 -15.59567 -15.46132 -15.25250 -14.58695 -14.52048 -14.44769 -13.96019 -13.61575 -13.45548 -13.20313 -13.01691 -12.66540 -12.55021 -11.96063 -11.68267 -11.58628 -11.34652 -10.92610 -10.90114 -10.54288 -10.29571 -9.52751 -9.44282 -9.34252 -8.98869 -8.80856 -8.68436 -7.75387 -6.14644 -4.21023 0.67474 0.81566 3.06472 3.24757 3.30115 3.33460 3.38445 3.86360 3.93118 4.10135 4.25387 4.28091 4.36107 4.47066 4.64887 4.76770 4.86119 5.07380 5.17119 5.21596 5.44744 5.52228 5.64045 5.71310 5.73349 5.80592 6.07234 6.44845 6.79911 7.12050 7.24143 7.52365 7.56364 7.57934 7.91515 8.05221 8.77781 8.94983 9.33667 9.48855 10.95676 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.047523 B = 0.002512 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.048558 B =11144.333499 C =11346.558508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.692 3.308 12 O -0.603 6.603 13 N -0.753 5.753 14 C 0.116 3.884 15 C 0.139 3.861 16 H 0.117 0.883 17 O -0.549 6.549 18 C -0.123 4.123 19 C -0.076 4.076 20 C -0.152 4.152 21 C 0.098 3.902 22 F -0.140 7.140 23 C -0.150 4.150 24 C -0.079 4.079 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.387 0.613 29 H 0.395 0.605 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.377 0.623 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 -23.104 -0.047 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.482 6.482 13 N -0.412 5.412 14 C -0.010 4.010 15 C 0.080 3.920 16 H 0.134 0.866 17 O -0.355 6.355 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.170 4.170 21 C 0.079 3.921 22 F -0.119 7.119 23 C -0.169 4.169 24 C -0.097 4.097 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.219 0.781 29 H 0.229 0.771 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.225 0.775 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.586 -23.021 -0.458 24.243 hybrid contribution 0.623 0.609 0.304 0.923 sum 8.209 -22.412 -0.154 23.869 Atomic orbital electron populations 1.69992 1.06093 1.27141 1.49108 1.24952 0.94917 0.99425 0.94800 0.86357 0.79813 0.82975 0.77721 1.19654 1.20822 1.20822 1.21269 0.93318 0.90417 1.52899 0.91872 1.18987 0.87796 0.81104 0.97598 1.45710 1.10836 1.04372 1.77132 1.16148 0.85139 0.81098 0.78415 1.90876 1.14286 1.84279 1.58759 1.45010 1.09120 1.04532 1.82511 1.21710 0.95320 0.80775 1.03160 1.21060 0.93159 0.88886 0.88920 0.86574 1.86640 1.41391 1.92157 1.15354 1.20478 1.00732 0.97053 0.94169 1.20906 0.97614 0.93559 0.97328 1.21166 1.01604 0.95923 0.98341 1.17774 0.99349 0.79992 0.94976 1.91509 1.86742 1.36797 1.96835 1.21127 1.03017 0.95977 0.96755 1.20776 0.96453 0.93735 0.98738 0.92528 0.95742 0.95764 0.78089 0.77073 0.90864 0.91504 0.77467 0.84521 0.84471 0.84475 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.07 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.22 16 9 C 0.27 7.16 5.43 -5.19 -0.03 7.14 16 10 N -0.73 -15.62 5.55 -66.41 -0.37 -15.99 16 11 C 0.69 14.21 8.57 -86.92 -0.74 13.46 16 12 O -0.60 -15.05 16.34 5.29 0.09 -14.97 16 13 N -0.75 -10.85 5.51 -65.22 -0.36 -11.21 16 14 C 0.12 1.37 5.29 -4.04 -0.02 1.35 16 15 C 0.14 1.18 3.24 -27.88 -0.09 1.09 16 16 H 0.12 0.89 8.00 -51.93 -0.42 0.48 16 17 O -0.55 -4.83 13.13 -35.23 -0.46 -5.29 16 18 C -0.12 -0.99 4.97 -104.62 -0.52 -1.51 16 19 C -0.08 -0.57 9.67 -39.59 -0.38 -0.96 16 20 C -0.15 -1.19 10.03 -39.51 -0.40 -1.59 16 21 C 0.10 0.87 7.30 -39.42 -0.29 0.58 16 22 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 23 C -0.15 -1.18 10.03 -39.51 -0.40 -1.58 16 24 C -0.08 -0.59 9.32 -39.59 -0.37 -0.96 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.09 8.34 -40.82 -0.34 6.75 16 29 H 0.40 4.72 8.49 -40.82 -0.35 4.37 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.38 2.31 7.50 45.56 0.34 2.65 16 33 H 0.14 0.77 8.04 -52.49 -0.42 0.35 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.71 6.78 -52.49 -0.36 0.35 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -34.52 322.25 -7.76 -42.27 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -3.61 Total: 7.68 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -3.65 Total: 3.60 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.01 Total: -52.70 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.38 Total: -20.26 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.52 -7.76 -42.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.619 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds