Wall clock time and date at job start Tue Mar 31 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99537 * 2 1 4 4 H 1.48507 * 109.47000 * 239.99740 * 3 2 1 5 5 H 1.48501 * 109.47503 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46963 * 120.00224 * 3 2 1 7 7 C 1.37872 * 120.00564 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00708 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00141 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99468 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00099 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99900 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47170 * 179.97438 * 14 13 11 16 16 H 1.08995 * 109.46893 * 59.99519 * 15 14 13 17 17 O 1.42895 * 109.47000 * 299.99652 * 15 14 13 18 18 C 1.50706 * 109.46982 * 179.97438 * 15 14 13 19 19 C 1.38216 * 120.01546 * 94.99894 * 18 15 14 20 20 C 1.38217 * 120.02581 * 179.97438 * 19 18 15 21 21 C 1.38265 * 120.05343 * 0.02562 * 20 19 18 22 22 C 1.38181 * 120.02597 * 359.97438 * 21 20 19 23 23 C 1.38443 * 120.00897 * 274.97461 * 18 15 14 24 24 F 1.35099 * 120.02540 * 0.04305 * 23 18 15 25 25 H 0.96999 * 120.00654 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46945 * 59.99423 * 9 7 2 27 27 H 1.09000 * 109.46737 * 299.99881 * 9 7 2 28 28 H 0.97003 * 120.00371 * 359.97438 * 10 9 7 29 29 H 0.96998 * 119.99887 * 359.97438 * 13 11 10 30 30 H 1.09000 * 109.47500 * 59.99114 * 14 13 11 31 31 H 1.09004 * 109.47101 * 299.99281 * 14 13 11 32 32 H 0.96707 * 114.00144 * 299.99777 * 17 15 14 33 33 H 1.08000 * 119.98383 * 0.02562 * 19 18 15 34 34 H 1.07997 * 119.97673 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.99414 * 179.72576 * 21 20 19 36 36 H 1.08002 * 120.01438 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5586 -5.1055 0.0006 13 7 2.6299 -5.9076 0.0031 14 6 2.1417 -7.2888 0.0022 15 6 3.3317 -8.2505 0.0038 16 1 3.9359 -8.0792 0.8946 17 8 4.1272 -8.0258 -1.1618 18 6 2.8294 -9.6713 0.0035 19 6 2.6986 -10.3582 -1.1887 20 6 2.2384 -11.6615 -1.1892 21 6 1.9079 -12.2796 0.0027 22 6 2.0377 -11.5949 1.1959 23 6 2.4992 -10.2892 1.1976 24 9 2.6262 -9.6187 2.3635 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 3.1569 -3.4353 0.0021 29 1 3.5835 -5.7303 0.0042 30 1 1.5376 -7.4602 -0.8888 31 1 1.5345 -7.4602 0.8912 32 1 3.6528 -8.1603 -1.9937 33 1 2.9570 -9.8766 -2.1202 34 1 2.1362 -12.1974 -2.1212 35 1 1.5442 -13.2965 0.0008 36 1 1.7798 -12.0780 2.1268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:32 Heat of formation + Delta-G solvation = -105.487189 kcal Electronic energy + Delta-G solvation = -21118.980674 eV Core-core repulsion = 17517.445798 eV Total energy + Delta-G solvation = -3601.534877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.19928 -39.99348 -39.04182 -37.36602 -34.32026 -33.77550 -32.32359 -31.91901 -30.94418 -28.50889 -26.75098 -24.05725 -23.05303 -22.33647 -21.61956 -20.13205 -18.39007 -18.09057 -17.22256 -16.97312 -16.23223 -15.88538 -15.58176 -15.46203 -15.23988 -14.65722 -14.49245 -14.36603 -14.18289 -13.52546 -13.46419 -12.98999 -12.77768 -12.63405 -12.38150 -11.91895 -11.76578 -11.61847 -11.42710 -10.95241 -10.84175 -10.56889 -10.27221 -9.44240 -9.36313 -9.33871 -9.02956 -8.77234 -8.65107 -7.72202 -6.12060 -4.18590 0.72087 0.80122 3.10702 3.28428 3.31391 3.33601 3.39009 3.85847 3.96415 4.06395 4.21023 4.34937 4.37448 4.53050 4.67764 4.79521 4.90158 5.05417 5.20477 5.23830 5.39989 5.60411 5.61912 5.75197 5.78402 5.95223 5.98680 6.46572 6.82955 7.15358 7.23363 7.55310 7.58746 7.60781 7.94634 8.08144 8.79972 8.98127 9.36566 9.51509 10.98208 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.039887 B = 0.002809 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.819983 B = 9965.116671 C =10082.309630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.693 3.307 12 O -0.603 6.603 13 N -0.752 5.752 14 C 0.118 3.882 15 C 0.140 3.860 16 H 0.118 0.882 17 O -0.547 6.547 18 C -0.148 4.148 19 C -0.081 4.081 20 C -0.127 4.127 21 C -0.091 4.091 22 C -0.153 4.153 23 C 0.111 3.889 24 F -0.133 7.133 25 H 0.266 0.734 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.387 0.613 29 H 0.396 0.604 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.377 0.623 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.833 -24.985 -1.499 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.392 3.608 12 O -0.482 6.482 13 N -0.410 5.410 14 C -0.008 4.008 15 C 0.080 3.920 16 H 0.136 0.864 17 O -0.353 6.353 18 C -0.150 4.150 19 C -0.099 4.099 20 C -0.145 4.145 21 C -0.109 4.109 22 C -0.171 4.171 23 C 0.091 3.909 24 F -0.112 7.112 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.219 0.781 29 H 0.230 0.770 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.226 0.774 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.972 -24.843 -1.008 25.823 hybrid contribution 0.798 0.977 -0.109 1.266 sum 7.770 -23.866 -1.117 25.124 Atomic orbital electron populations 1.69968 1.06094 1.27359 1.48954 1.24944 0.94913 0.99389 0.94790 0.86468 0.79388 0.82319 0.78665 1.20092 1.21096 1.20085 1.21200 0.93255 0.90454 1.53119 0.91974 1.18973 0.87783 0.81061 0.97580 1.45702 1.10827 1.04340 1.77169 1.16139 0.85124 0.81086 0.78405 1.90872 1.14280 1.84282 1.58770 1.44969 1.09180 1.04425 1.82471 1.21641 0.95144 0.80827 1.03148 1.20945 0.92377 0.88283 0.90382 0.86439 1.86641 1.40709 1.92176 1.15744 1.20479 1.03630 0.97952 0.92943 1.20809 0.97491 0.94614 0.96972 1.21200 0.99744 0.94974 0.98614 1.21069 0.98118 1.00087 0.91596 1.21190 1.02493 0.93239 1.00208 1.17499 1.01323 0.91059 0.80997 1.91533 1.93438 1.80147 1.46058 0.92422 0.95766 0.95765 0.78093 0.76999 0.91441 0.90928 0.77410 0.84841 0.85057 0.84889 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.33 5.43 -5.20 -0.03 7.30 16 10 N -0.73 -16.11 5.55 -66.42 -0.37 -16.48 16 11 C 0.69 14.83 8.57 -86.92 -0.74 14.08 16 12 O -0.60 -15.54 16.34 5.29 0.09 -15.45 16 13 N -0.75 -11.73 5.45 -65.22 -0.36 -12.08 16 14 C 0.12 1.58 5.32 -4.04 -0.02 1.56 16 15 C 0.14 1.44 3.07 -27.88 -0.09 1.35 16 16 H 0.12 1.24 7.79 -51.93 -0.40 0.84 16 17 O -0.55 -5.25 12.73 -35.23 -0.45 -5.69 16 18 C -0.15 -1.41 5.07 -104.55 -0.53 -1.94 16 19 C -0.08 -0.61 9.30 -39.60 -0.37 -0.98 16 20 C -0.13 -0.83 10.04 -39.58 -0.40 -1.22 16 21 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 22 C -0.15 -1.23 10.03 -39.51 -0.40 -1.63 16 23 C 0.11 1.12 7.24 -39.42 -0.29 0.83 16 24 F -0.13 -1.55 16.57 2.25 0.04 -1.51 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.39 7.35 8.34 -40.82 -0.34 7.01 16 29 H 0.40 5.21 8.36 -40.82 -0.34 4.87 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.38 2.51 7.33 45.56 0.33 2.84 16 33 H 0.13 0.71 6.41 -52.49 -0.34 0.38 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -34.90 320.52 -7.76 -42.66 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.58 Total: 8.70 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -3.67 Total: 4.71 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.01 Total: -54.38 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.36 Total: -21.14 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.90 -7.76 -42.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.830 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds