Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.36008 * 116.99939 * 179.97438 * 3 2 1 5 5 C 1.38714 * 119.96999 * 359.72208 * 4 3 2 6 6 C 1.38090 * 120.01680 * 179.76658 * 5 4 3 7 7 C 1.38919 * 119.97730 * 0.53152 * 6 5 4 8 8 S 1.76199 * 120.02524 * 179.69958 * 7 6 5 9 9 C 1.81401 * 102.99973 * 0.02562 * 8 7 6 10 10 C 1.53003 * 109.47030 * 179.97438 * 9 8 7 11 11 O 1.42898 * 109.47329 * 179.97438 * 10 9 8 12 12 C 1.42897 * 114.00370 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47096 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99991 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99821 * 0.02562 * 15 13 12 17 17 Si 1.86788 * 120.00121 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47194 * 89.99913 * 17 15 13 19 19 H 1.48499 * 109.47425 * 210.00190 * 17 15 13 20 20 H 1.48504 * 109.47262 * 330.00084 * 17 15 13 21 21 C 1.38921 * 119.95119 * 359.72030 * 7 6 5 22 22 C 1.38086 * 119.97064 * 0.02562 * 21 7 6 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07994 * 119.99002 * 0.02562 * 5 4 3 29 29 H 1.08004 * 120.01237 * 180.25620 * 6 5 4 30 30 H 1.08997 * 109.47003 * 299.99690 * 9 8 7 31 31 H 1.08998 * 109.46751 * 60.00292 * 9 8 7 32 32 H 1.09002 * 109.47317 * 300.00306 * 10 9 8 33 33 H 1.09004 * 109.46969 * 60.00214 * 10 9 8 34 34 H 1.08994 * 109.47784 * 300.00889 * 12 11 10 35 35 H 1.09002 * 109.46485 * 60.00501 * 12 11 10 36 36 H 0.97000 * 119.99860 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.01352 * 179.97438 * 21 7 6 38 38 H 1.08005 * 119.98124 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3546 1.5256 0.0005 5 6 4.1991 0.4252 0.0069 6 6 5.5682 0.6051 0.0026 7 6 6.0997 1.8886 0.0030 8 16 7.8465 2.1195 0.0055 9 6 8.4827 0.4207 0.0061 10 6 10.0124 0.4491 0.0076 11 8 10.5137 -0.8891 0.0086 12 6 11.9400 -0.9756 0.0095 13 6 12.3555 -2.4242 0.0099 14 1 11.6053 -3.2011 0.0091 15 6 13.6933 -2.7577 0.0113 16 7 14.6069 -1.8116 0.0128 17 14 14.2083 -4.5532 0.0125 18 1 14.3460 -5.0296 -1.3871 19 1 15.5096 -4.6946 0.7139 20 1 13.1786 -5.3631 0.7120 21 6 5.2529 2.9899 0.0020 22 6 3.8841 2.8076 0.0010 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7857 -0.5725 0.0110 29 1 6.2256 -0.2518 0.0033 30 1 8.1277 -0.0999 0.8955 31 1 8.1302 -0.0995 -0.8845 32 1 10.3671 0.9696 -0.8820 33 1 10.3653 0.9695 0.8980 34 1 12.3344 -0.4851 -0.8804 35 1 12.3332 -0.4842 0.8995 36 1 15.5481 -2.0462 0.0141 37 1 5.6650 3.9882 0.0027 38 1 3.2256 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814736732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = -72.603272 kcal Electronic energy + Delta-G solvation = -18299.304863 eV Core-core repulsion = 15233.116364 eV Total energy + Delta-G solvation = -3066.188498 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31281 -37.70707 -36.93112 -32.92549 -32.40617 -31.51403 -30.75726 -29.76736 -27.07546 -24.54077 -22.97544 -22.78899 -22.32378 -21.57478 -18.62124 -17.43745 -16.45394 -16.43337 -16.11908 -15.98473 -15.50674 -14.87132 -14.67656 -14.23789 -13.84652 -13.81210 -13.69840 -13.25630 -13.25320 -13.00161 -12.47445 -12.14328 -12.07310 -11.93626 -11.32737 -11.14720 -11.10144 -10.90266 -10.83952 -10.78599 -10.19590 -10.11372 -9.33262 -9.19315 -9.17999 -8.92457 -8.26798 -7.27688 -6.15576 -4.18011 1.06901 1.08361 1.44235 2.41716 2.89096 3.27582 3.32638 3.37705 3.45435 4.31164 4.46572 4.52587 4.59151 4.69070 4.77810 4.84301 5.00710 5.06708 5.06741 5.20835 5.22451 5.37629 5.39202 5.57694 5.60112 5.65048 5.72721 5.82374 6.04086 6.07432 6.09064 6.09668 6.41545 7.01941 7.12013 7.35251 7.73170 8.07440 8.45644 8.93785 9.46741 10.95829 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026922 B = 0.002517 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.805790 B =11120.623954 C =12124.075948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.317 6.317 4 C 0.120 3.880 5 C -0.188 4.188 6 C -0.092 4.092 7 C -0.114 4.114 8 S -0.109 6.109 9 C -0.103 4.103 10 C 0.080 3.920 11 O -0.393 6.393 12 C 0.196 3.804 13 C -0.517 4.517 14 H 0.067 0.933 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.910 3.090 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.062 4.062 22 C -0.134 4.134 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.206 7.596 -0.022 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.231 6.231 4 C 0.073 3.927 5 C -0.208 4.208 6 C -0.115 4.115 7 C -0.227 4.227 8 S 0.134 5.866 9 C -0.252 4.252 10 C 0.001 3.999 11 O -0.314 6.314 12 C 0.122 3.878 13 C -0.556 4.556 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.737 3.263 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.085 4.085 22 C -0.155 4.155 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.510 8.575 -0.015 25.967 hybrid contribution -0.058 -2.103 -0.012 2.103 sum -24.568 6.472 -0.027 25.406 Atomic orbital electron populations 1.21774 0.92697 1.02912 1.03498 1.22796 0.95892 0.81992 1.01555 1.86080 1.18961 1.29305 1.88802 1.18960 0.82235 0.94111 0.97417 1.21146 0.93748 0.98212 1.07681 1.21104 0.95136 0.96042 0.99261 1.21653 0.97293 0.96154 1.07604 1.85337 0.96668 1.12069 1.92484 1.23582 1.00121 0.95030 1.06424 1.21769 0.89625 0.87949 1.00562 1.87838 1.25972 1.22219 1.95324 1.20264 0.73779 0.98077 0.95723 1.21030 0.91920 0.91361 1.51239 0.91506 1.24965 0.96051 0.98465 0.95050 1.69963 1.00954 1.32438 1.50222 0.86304 0.77919 0.83812 0.78264 1.20411 1.21012 1.19628 1.20572 0.91556 0.97889 0.98531 1.20318 0.94568 0.94914 1.05660 0.91514 0.90330 0.91519 0.91948 0.91951 0.85201 0.85093 0.88794 0.88800 0.93334 0.93343 0.97413 0.97397 0.92549 0.84694 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.41 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.32 -3.20 10.14 -19.77 -0.20 -3.40 16 4 C 0.12 1.31 6.69 -39.23 -0.26 1.05 16 5 C -0.19 -2.01 9.03 -39.46 -0.36 -2.37 16 6 C -0.09 -1.10 9.36 -39.38 -0.37 -1.47 16 7 C -0.11 -1.43 6.11 -39.08 -0.24 -1.67 16 8 S -0.11 -1.48 21.92 -107.50 -2.36 -3.84 16 9 C -0.10 -1.56 4.70 37.16 0.17 -1.38 16 10 C 0.08 1.49 5.95 37.16 0.22 1.71 16 11 O -0.39 -9.41 10.33 -35.23 -0.36 -9.77 16 12 C 0.20 5.36 5.69 36.01 0.20 5.56 16 13 C -0.52 -15.16 9.43 -34.44 -0.32 -15.48 16 14 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 17 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.06 -0.68 9.79 -39.38 -0.39 -1.06 16 22 C -0.13 -1.40 9.98 -39.47 -0.39 -1.79 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 27 H 0.06 0.40 7.65 -51.93 -0.40 0.01 16 28 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16 29 H 0.13 1.52 5.87 -52.48 -0.31 1.21 16 30 H 0.09 1.37 7.74 -51.93 -0.40 0.97 16 31 H 0.09 1.37 7.75 -51.92 -0.40 0.97 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -31.50 336.64 -8.96 -40.46 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.59 Total: -4.00 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.24 Total: -15.23 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.56 Total: -13.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.36 Total: -3.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.50 -8.96 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814736732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.143 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds