Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.36008 * 116.99939 * 179.97438 * 3 2 1 5 5 C 1.38714 * 119.96999 * 359.72208 * 4 3 2 6 6 C 1.38090 * 120.01680 * 179.76658 * 5 4 3 7 7 C 1.38919 * 119.97730 * 0.53152 * 6 5 4 8 8 S 1.76199 * 120.02524 * 179.69958 * 7 6 5 9 9 C 1.81401 * 102.99973 * 0.02562 * 8 7 6 10 10 C 1.53003 * 109.47030 * 179.97438 * 9 8 7 11 11 O 1.42898 * 109.47329 * 179.97438 * 10 9 8 12 12 C 1.42897 * 114.00370 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47096 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99991 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99821 * 0.02562 * 15 13 12 17 17 Si 1.86788 * 120.00121 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47194 * 89.99913 * 17 15 13 19 19 H 1.48499 * 109.47425 * 210.00190 * 17 15 13 20 20 H 1.48504 * 109.47262 * 330.00084 * 17 15 13 21 21 C 1.38921 * 119.95119 * 359.72030 * 7 6 5 22 22 C 1.38086 * 119.97064 * 0.02562 * 21 7 6 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07994 * 119.99002 * 0.02562 * 5 4 3 29 29 H 1.08004 * 120.01237 * 180.25620 * 6 5 4 30 30 H 1.08997 * 109.47003 * 299.99690 * 9 8 7 31 31 H 1.08998 * 109.46751 * 60.00292 * 9 8 7 32 32 H 1.09002 * 109.47317 * 300.00306 * 10 9 8 33 33 H 1.09004 * 109.46969 * 60.00214 * 10 9 8 34 34 H 1.08994 * 109.47784 * 300.00889 * 12 11 10 35 35 H 1.09002 * 109.46485 * 60.00501 * 12 11 10 36 36 H 0.97000 * 119.99860 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.01352 * 179.97438 * 21 7 6 38 38 H 1.08005 * 119.98124 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3546 1.5256 0.0005 5 6 4.1991 0.4252 0.0069 6 6 5.5682 0.6051 0.0026 7 6 6.0997 1.8886 0.0030 8 16 7.8465 2.1195 0.0055 9 6 8.4827 0.4207 0.0061 10 6 10.0124 0.4491 0.0076 11 8 10.5137 -0.8891 0.0086 12 6 11.9400 -0.9756 0.0095 13 6 12.3555 -2.4242 0.0099 14 1 11.6053 -3.2011 0.0091 15 6 13.6933 -2.7577 0.0113 16 7 14.6069 -1.8116 0.0128 17 14 14.2083 -4.5532 0.0125 18 1 14.3460 -5.0296 -1.3871 19 1 15.5096 -4.6946 0.7139 20 1 13.1786 -5.3631 0.7120 21 6 5.2529 2.9899 0.0020 22 6 3.8841 2.8076 0.0010 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7857 -0.5725 0.0110 29 1 6.2256 -0.2518 0.0033 30 1 8.1277 -0.0999 0.8955 31 1 8.1302 -0.0995 -0.8845 32 1 10.3671 0.9696 -0.8820 33 1 10.3653 0.9695 0.8980 34 1 12.3344 -0.4851 -0.8804 35 1 12.3332 -0.4842 0.8995 36 1 15.5481 -2.0462 0.0141 37 1 5.6650 3.9882 0.0027 38 1 3.2256 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814736732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = -90.221510 kcal Electronic energy + Delta-G solvation = -18300.068847 eV Core-core repulsion = 15233.116364 eV Total energy + Delta-G solvation = -3066.952483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.08842 -38.78667 -38.48667 -35.05291 -33.13224 -32.65191 -31.85753 -30.58137 -29.18422 -25.32166 -24.62847 -23.99156 -23.67035 -22.42555 -19.40525 -18.72959 -18.29362 -17.67687 -17.11944 -17.04981 -16.92574 -16.53695 -15.69106 -15.51068 -15.23066 -14.97898 -14.55192 -14.44058 -14.38791 -13.87056 -13.51384 -13.33539 -13.11985 -12.97066 -12.77881 -12.64607 -12.58460 -12.56634 -12.05546 -11.84621 -11.79062 -11.38212 -11.24642 -10.93189 -10.34349 -10.20014 -10.05153 -8.34677 -8.27695 -6.47783 0.19470 0.24266 0.32828 1.33754 1.39988 1.42758 1.54837 2.22151 2.33572 2.60350 2.99246 3.14815 3.70031 3.76630 3.81645 3.97247 4.04815 4.10988 4.20183 4.26771 4.35242 4.37206 4.51881 4.58289 4.63098 4.79357 4.83691 4.90111 4.94160 5.03585 5.11851 5.17229 5.23565 5.29134 5.51255 5.60686 5.90339 6.37751 6.42942 6.73693 7.23656 8.77581 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026922 B = 0.002517 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.805790 B =11120.623954 C =12124.075948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.117 3.883 5 C -0.191 4.191 6 C -0.102 4.102 7 C -0.132 4.132 8 S -0.109 6.109 9 C -0.095 4.095 10 C 0.074 3.926 11 O -0.405 6.405 12 C 0.208 3.792 13 C -0.551 4.551 14 H 0.064 0.936 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.986 3.014 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.264 1.264 21 C -0.062 4.062 22 C -0.137 4.137 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.051 0.949 34 H -0.010 1.010 35 H -0.010 1.010 36 H 0.272 0.728 37 H 0.150 0.850 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.632 6.761 -0.035 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.241 6.241 4 C 0.069 3.931 5 C -0.211 4.211 6 C -0.126 4.126 7 C -0.245 4.245 8 S 0.133 5.867 9 C -0.243 4.243 10 C -0.004 4.004 11 O -0.325 6.325 12 C 0.133 3.867 13 C -0.588 4.588 14 H 0.082 0.918 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.809 3.191 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.188 1.188 21 C -0.086 4.086 22 C -0.157 4.157 23 H 0.083 0.917 24 H 0.116 0.884 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.148 0.852 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.081 0.919 37 H 0.168 0.832 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.971 7.754 -0.030 27.104 hybrid contribution 0.234 -1.747 -0.009 1.762 sum -25.737 6.008 -0.038 26.429 Atomic orbital electron populations 1.21800 0.91312 1.04146 1.03317 1.23078 0.97046 0.80825 1.02223 1.86084 1.18357 1.31165 1.88539 1.19155 0.82789 0.94366 0.96747 1.21339 0.93231 0.99283 1.07221 1.21198 0.95822 0.95876 0.99713 1.21710 0.96319 0.97031 1.09443 1.85261 0.98165 1.10179 1.93052 1.23382 0.97325 0.96714 1.06879 1.21987 0.92024 0.85567 1.00835 1.87783 1.23878 1.25528 1.95330 1.19907 0.75620 0.97219 0.93950 1.21373 0.92709 0.92123 1.52640 0.91785 1.26002 0.95728 1.03794 0.93829 1.70070 1.01562 1.34996 1.50185 0.85138 0.77793 0.77338 0.78872 1.19230 1.19907 1.18794 1.20776 0.91733 0.98182 0.97876 1.20581 0.94567 0.95615 1.04954 0.91689 0.88395 0.91695 0.91266 0.91264 0.83383 0.85196 0.88389 0.88388 0.93039 0.93055 0.99193 0.99184 0.91939 0.83227 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.04 0.53 5.46 71.98 0.39 0.92 16 3 O -0.33 -6.04 10.14 -93.65 -0.95 -6.99 16 4 C 0.12 2.36 6.69 22.49 0.15 2.51 16 5 C -0.19 -3.82 9.03 22.35 0.20 -3.62 16 6 C -0.10 -2.37 9.36 22.40 0.21 -2.16 16 7 C -0.13 -3.20 6.11 22.60 0.14 -3.07 16 8 S -0.11 -2.91 21.92 -56.49 -1.24 -4.15 16 9 C -0.09 -2.85 4.70 71.98 0.34 -2.51 16 10 C 0.07 2.80 5.95 71.98 0.43 3.23 16 11 O -0.40 -19.79 10.33 -148.98 -1.54 -21.32 16 12 C 0.21 11.74 5.69 71.24 0.41 12.15 16 13 C -0.55 -32.76 9.43 25.60 0.24 -32.52 16 14 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 15 C 0.01 0.30 5.46 84.66 0.46 0.76 16 16 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 17 Si 0.99 44.07 29.54 68.60 2.03 46.10 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 21 C -0.06 -1.28 9.79 22.40 0.22 -1.07 16 22 C -0.14 -2.61 9.98 22.35 0.22 -2.39 16 23 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 27 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 28 H 0.15 2.30 6.29 -2.91 -0.02 2.29 16 29 H 0.13 2.95 5.87 -2.91 -0.02 2.93 16 30 H 0.10 2.84 7.74 -2.39 -0.02 2.82 16 31 H 0.10 2.84 7.75 -2.39 -0.02 2.82 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -67.00 336.64 3.77 -63.23 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.04 Total: 6.89 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 4.15 Total: -28.30 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.28 Total: -55.46 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -2.49 Total: -28.31 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -1.24 Total: -4.15 kcal Total: -67.00 3.77 -63.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814736732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.989 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds