Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00150 * 2 1 4 4 C 1.53003 * 109.47429 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47161 * 64.43243 * 4 3 2 6 6 C 1.36892 * 120.00334 * 267.66603 * 5 4 3 7 7 H 1.08002 * 120.00468 * 130.81216 * 6 5 4 8 8 C 1.39030 * 119.99952 * 310.81642 * 6 5 4 9 9 N 1.31370 * 120.00144 * 169.66551 * 8 6 5 10 10 Si 1.86803 * 119.99867 * 349.66224 * 8 6 5 11 11 H 1.48500 * 109.47118 * 91.82308 * 10 8 6 12 12 H 1.48502 * 109.46864 * 211.82281 * 10 8 6 13 13 H 1.48497 * 109.47012 * 331.82101 * 10 8 6 14 14 C 1.34778 * 120.00045 * 87.66315 * 5 4 3 15 15 O 1.21609 * 120.00067 * 2.02356 * 14 5 4 16 16 C 1.47616 * 120.00455 * 182.02284 * 14 5 4 17 17 C 1.39626 * 120.53392 * 319.54213 * 16 14 5 18 18 N 1.31652 * 120.58334 * 180.02562 * 17 16 14 19 19 C 1.32186 * 121.84538 * 0.02562 * 18 17 16 20 20 F 1.35100 * 119.48307 * 180.02562 * 19 18 17 21 21 C 1.38715 * 121.03478 * 0.02562 * 19 18 17 22 22 C 1.50696 * 120.35599 * 180.02562 * 21 19 18 23 23 C 1.38182 * 119.29136 * 359.97438 * 21 19 18 24 24 H 1.08994 * 109.46945 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47600 * 300.00475 * 1 2 3 26 26 H 1.08999 * 109.46761 * 60.00454 * 1 2 3 27 27 H 1.09004 * 109.47285 * 59.99483 * 3 2 1 28 28 H 1.09003 * 109.46923 * 299.99747 * 3 2 1 29 29 H 1.09001 * 109.46760 * 304.43723 * 4 3 2 30 30 H 1.08996 * 109.47022 * 184.43831 * 4 3 2 31 31 H 0.97001 * 120.00270 * 180.02562 * 9 8 6 32 32 H 1.08001 * 119.70674 * 359.74538 * 17 16 14 33 33 H 1.09002 * 109.46913 * 269.97623 * 22 21 19 34 34 H 1.09003 * 109.46991 * 29.97204 * 22 21 19 35 35 H 1.08998 * 109.47475 * 149.97081 * 22 21 19 36 36 H 1.08004 * 120.84012 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9758 0.5517 -1.2450 6 6 4.1428 -0.8058 -1.3011 7 1 3.7031 -1.3712 -2.1095 8 6 4.8786 -1.4569 -0.3174 9 7 4.8722 -2.7690 -0.2527 10 14 5.8766 -0.4660 0.9121 11 1 5.0499 -0.1933 2.1152 12 1 7.0838 -1.2363 1.3051 13 1 6.2893 0.8193 0.2933 14 6 4.2163 1.3059 -2.3358 15 8 4.1034 2.5152 -2.2758 16 6 4.6167 0.6640 -3.6033 17 6 5.5140 -0.4057 -3.6043 18 7 5.8722 -0.9786 -4.7342 19 6 5.4046 -0.5712 -5.9016 20 9 5.8041 -1.1941 -7.0319 21 6 4.5103 0.4860 -5.9843 22 6 3.9865 0.9374 -7.3232 23 6 4.1039 1.1199 -4.8256 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8514 0.5768 0.8485 30 1 3.9785 2.1773 0.0802 31 1 5.3852 -3.2233 0.4339 32 1 5.9213 -0.7635 -2.6702 33 1 4.6451 1.7042 -7.7312 34 1 3.9519 0.0878 -8.0051 35 1 2.9836 1.3469 -7.2018 36 1 3.4089 1.9458 -4.8610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857722762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -73.739060 kcal Electronic energy + Delta-G solvation = -22641.895187 eV Core-core repulsion = 19041.737012 eV Total energy + Delta-G solvation = -3600.158175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.70290 -40.05262 -38.53896 -37.09707 -35.04264 -33.48233 -32.15178 -31.49257 -29.31188 -27.04576 -25.94720 -25.11370 -23.77051 -22.65380 -21.98712 -19.30585 -17.66971 -17.54185 -17.14234 -16.40017 -15.83732 -15.79950 -15.44725 -14.84400 -14.51180 -14.31386 -13.94662 -13.80092 -13.37105 -13.21764 -13.10316 -12.75925 -12.63157 -12.48079 -12.25325 -12.01392 -11.82684 -11.54646 -11.52043 -10.97891 -10.93574 -10.20729 -10.06785 -9.67621 -9.42216 -9.18668 -9.08494 -8.78975 -8.34173 -7.85241 -6.49365 -4.24733 1.13615 1.51566 3.01192 3.16233 3.20749 3.45032 3.93422 3.99839 4.07606 4.22466 4.37612 4.79763 4.91714 5.04128 5.20830 5.36799 5.50702 5.56488 5.62733 5.66494 5.75188 5.81112 5.83232 5.88938 5.96979 6.00536 6.12162 6.20670 6.30303 6.35839 6.60820 7.05912 7.27128 7.69597 7.96137 8.09894 8.19121 8.81451 9.14601 9.47331 10.58908 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.006673 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.828406 B = 4194.824105 C = 4945.690330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.055 3.945 4 C 0.099 3.901 5 N -0.446 5.446 6 C -0.338 4.338 7 H 0.102 0.898 8 C 0.074 3.926 9 N -0.852 5.852 10 Si 0.872 3.128 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.259 1.259 14 C 0.529 3.471 15 O -0.591 6.591 16 C -0.151 4.151 17 C 0.197 3.803 18 N -0.518 5.518 19 C 0.303 3.697 20 F -0.119 7.119 21 C -0.181 4.181 22 C -0.102 4.102 23 C -0.017 4.017 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.277 0.723 32 H 0.192 0.808 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 6.069 -4.549 8.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.023 4.023 4 C -0.024 4.024 5 N -0.165 5.165 6 C -0.466 4.466 7 H 0.120 0.880 8 C -0.135 4.135 9 N -0.486 5.486 10 Si 0.699 3.301 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.183 1.183 14 C 0.318 3.682 15 O -0.476 6.476 16 C -0.156 4.156 17 C 0.040 3.960 18 N -0.232 5.232 19 C 0.150 3.850 20 F -0.098 7.098 21 C -0.184 4.184 22 C -0.160 4.160 23 C -0.043 4.043 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.209 0.791 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.183 5.562 -4.423 7.786 hybrid contribution -0.367 0.873 0.631 1.138 sum -3.550 6.435 -3.792 8.270 Atomic orbital electron populations 1.22665 0.82878 1.02164 0.98821 1.88196 1.17808 1.26702 1.95041 1.22858 0.94814 0.85201 0.99414 1.21817 0.92291 0.99012 0.89307 1.43476 1.57244 1.07520 1.08257 1.18956 1.33579 0.79591 1.14468 0.88049 1.25422 0.95766 0.95250 0.97089 1.69647 1.38275 1.07438 1.33216 0.86964 0.80169 0.81108 0.81880 1.19703 1.21037 1.18287 1.18044 0.79970 0.85847 0.84340 1.90657 1.57591 1.13852 1.85504 1.20939 1.01127 0.98892 0.94671 1.23475 0.90337 0.87525 0.94707 1.67195 1.27090 1.31245 0.97668 1.18246 0.93832 0.90539 0.82432 1.91553 1.89365 1.81932 1.46969 1.20377 1.01536 0.98725 0.97770 1.20607 1.01158 1.01762 0.92434 1.21343 0.96365 0.96961 0.89625 0.90045 0.95061 0.94892 0.93700 0.93344 0.90343 0.89623 0.91228 0.79104 0.90999 0.91196 0.90999 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.24 10.26 -35.23 -0.36 -7.60 16 3 C 0.06 1.02 6.27 37.16 0.23 1.25 16 4 C 0.10 2.05 4.43 -4.04 -0.02 2.03 16 5 N -0.45 -10.16 1.97 -115.97 -0.23 -10.39 16 6 C -0.34 -8.33 6.18 -15.00 -0.09 -8.42 16 7 H 0.10 2.75 7.42 -52.49 -0.39 2.36 16 8 C 0.07 1.85 5.16 -17.46 -0.09 1.76 16 9 N -0.85 -22.68 13.95 55.50 0.77 -21.91 16 10 Si 0.87 19.37 24.94 -169.99 -4.24 15.13 16 11 H -0.27 -5.84 6.75 56.52 0.38 -5.46 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 14 C 0.53 11.82 7.31 -12.43 -0.09 11.73 16 15 O -0.59 -13.86 16.55 5.27 0.09 -13.77 16 16 C -0.15 -3.09 5.34 -104.83 -0.56 -3.65 16 17 C 0.20 4.12 9.25 -17.11 -0.16 3.97 16 18 N -0.52 -10.63 10.36 -13.20 -0.14 -10.77 16 19 C 0.30 5.49 8.36 -17.22 -0.14 5.35 16 20 F -0.12 -2.02 16.50 2.25 0.04 -1.98 16 21 C -0.18 -2.88 5.90 -104.47 -0.62 -3.49 16 22 C -0.10 -1.19 9.85 36.00 0.35 -0.84 16 23 C -0.02 -0.29 9.48 -38.88 -0.37 -0.66 16 24 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.68 4.02 -51.93 -0.21 1.47 16 30 H 0.09 1.68 7.46 -51.93 -0.39 1.29 16 31 H 0.28 6.93 8.31 -40.82 -0.34 6.60 16 32 H 0.19 4.24 6.12 -52.49 -0.32 3.92 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.77 7.65 -51.93 -0.40 0.37 16 35 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.14 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 310.02 15.07 4.67 4.67 Total: -1.00 -28.72 310.02 -4.07 -32.79 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.24 Total: 3.22 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.44 Total: 10.61 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.41 Total: -43.07 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.27 Total: -21.37 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.24 Total: 15.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.72 -4.07 -32.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857722762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.951 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds