Wall clock time and date at job start Tue Mar 31 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99968 * 2 1 4 4 H 1.48499 * 109.46884 * 264.92260 * 3 2 1 5 5 H 1.48501 * 109.46938 * 24.92288 * 3 2 1 6 6 H 1.48494 * 109.46961 * 144.92333 * 3 2 1 7 7 C 1.37881 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99362 * 5.40921 * 7 2 1 9 9 C 1.50694 * 119.99988 * 185.40741 * 7 2 1 10 10 N 1.46500 * 109.47173 * 174.82298 * 9 7 2 11 11 C 1.46499 * 119.99648 * 264.42123 * 10 9 7 12 12 C 1.50698 * 109.47370 * 89.99874 * 11 10 9 13 13 C 1.38678 * 120.41378 * 269.71758 * 12 11 10 14 14 C 1.38626 * 118.41620 * 179.77885 * 13 12 11 15 15 C 1.38233 * 119.16168 * 0.51889 * 14 13 12 16 16 N 1.31851 * 120.76478 * 359.72612 * 15 14 13 17 17 C 1.31892 * 121.72477 * 359.97438 * 16 15 14 18 18 C 1.34773 * 120.00503 * 84.41721 * 10 9 7 19 19 O 1.21508 * 120.00618 * 184.96492 * 18 10 9 20 20 O 1.34641 * 119.99679 * 4.96151 * 18 10 9 21 21 C 1.45202 * 116.99888 * 185.40600 * 20 18 10 22 22 C 1.52998 * 109.47020 * 180.02562 * 21 20 18 23 23 F 1.39904 * 109.47225 * 65.00218 * 22 21 20 24 24 H 0.97001 * 120.00397 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47297 * 294.81523 * 9 7 2 26 26 H 1.09000 * 109.47353 * 54.81569 * 9 7 2 27 27 H 1.08997 * 109.46933 * 209.99902 * 11 10 9 28 28 H 1.09002 * 109.47189 * 329.99422 * 11 10 9 29 29 H 1.07994 * 120.79396 * 0.02883 * 13 12 11 30 30 H 1.08000 * 120.42417 * 180.22229 * 14 13 12 31 31 H 1.07998 * 119.61850 * 179.74078 * 15 14 13 32 32 H 1.07996 * 119.61660 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47269 * 300.00121 * 21 20 18 34 34 H 1.08993 * 109.46877 * 60.00039 * 21 20 18 35 35 H 1.08996 * 109.47122 * 184.99691 * 22 21 20 36 36 H 1.08996 * 109.47076 * 305.00444 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6039 1.9845 -1.3946 5 1 1.3970 2.6813 0.5900 6 1 3.4888 1.4736 0.8046 7 6 2.0045 -1.1941 0.0005 8 1 1.4681 -2.1272 -0.0872 9 6 3.5064 -1.1969 0.1235 10 7 3.9857 -2.5777 0.2233 11 6 4.2385 -3.1720 1.5382 12 6 2.9827 -3.8382 2.0383 13 6 2.0679 -3.1287 2.8018 14 6 0.9245 -3.7811 3.2362 15 6 0.7407 -5.1106 2.9054 16 7 1.6345 -5.7553 2.1816 17 6 2.7308 -5.1651 1.7464 18 6 4.1938 -3.3012 -0.8946 19 8 4.5041 -4.4730 -0.8109 20 8 4.0579 -2.7256 -2.1041 21 6 4.1784 -3.5914 -3.2635 22 6 3.9969 -2.7649 -4.5382 23 9 5.0460 -1.8463 -4.6517 24 1 -0.4851 0.8400 -0.0004 25 1 3.9439 -0.7232 -0.7554 26 1 3.7989 -0.6453 1.0170 27 1 5.0342 -3.9123 1.4553 28 1 4.5394 -2.3921 2.2377 29 1 2.2402 -2.0916 3.0487 30 1 0.1888 -3.2586 3.8297 31 1 -0.1454 -5.6272 3.2435 32 1 3.4400 -5.7256 1.1555 33 1 5.1645 -4.0558 -3.2693 34 1 3.4125 -4.3656 -3.2199 35 1 3.9987 -3.4272 -5.4039 36 1 3.0486 -2.2296 -4.4922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858883400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:55 Heat of formation + Delta-G solvation = -91.037424 kcal Electronic energy + Delta-G solvation = -22524.511540 eV Core-core repulsion = 18923.603252 eV Total energy + Delta-G solvation = -3600.908288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.46630 -40.13107 -39.40059 -36.62457 -35.19602 -32.80291 -32.06938 -31.24596 -30.42671 -28.17071 -26.09245 -23.26368 -23.01805 -22.40092 -21.79554 -19.97137 -17.35170 -17.18983 -16.78918 -16.51435 -16.41501 -15.75209 -15.48775 -15.37040 -14.84736 -14.68286 -14.48937 -13.82187 -13.35566 -13.11701 -12.71480 -12.55331 -12.51750 -12.41361 -12.11379 -11.78688 -11.30627 -11.15542 -11.05737 -10.80721 -10.72982 -10.31945 -10.24777 -9.95558 -9.65834 -9.24844 -9.02403 -8.70639 -8.57112 -7.96948 -6.19602 -4.19292 1.51830 1.82522 2.74397 3.19350 3.25732 3.28937 3.43301 4.22647 4.28089 4.48477 4.74304 4.85697 4.88948 5.09939 5.10911 5.17211 5.28103 5.31833 5.43111 5.53666 5.59059 5.76219 5.89038 5.91877 6.08722 6.24829 6.32579 6.63887 6.67324 6.72463 6.83603 7.15239 7.19520 7.43993 7.98394 8.36234 8.42362 8.82758 8.92236 9.39511 10.92917 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.008022 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.702142 B = 3489.363518 C = 5177.769985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.870 3.130 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C 0.211 3.789 10 N -0.572 5.572 11 C 0.182 3.818 12 C -0.151 4.151 13 C -0.029 4.029 14 C -0.174 4.174 15 C 0.091 3.909 16 N -0.497 5.497 17 C 0.116 3.884 18 C 0.657 3.343 19 O -0.596 6.596 20 O -0.348 6.348 21 C 0.053 3.947 22 C 0.066 3.934 23 F -0.213 7.213 24 H 0.265 0.735 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 -4.963 0.438 8.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.093 0.907 9 C 0.091 3.909 10 N -0.308 5.308 11 C 0.060 3.940 12 C -0.154 4.154 13 C -0.056 4.056 14 C -0.194 4.194 15 C -0.065 4.065 16 N -0.206 5.206 17 C -0.041 4.041 18 C 0.412 3.588 19 O -0.488 6.488 20 O -0.261 6.261 21 C -0.023 4.023 22 C 0.011 3.989 23 F -0.195 7.195 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.248 -6.017 0.178 8.676 hybrid contribution 0.189 1.928 0.035 1.938 sum 6.437 -4.089 0.213 7.629 Atomic orbital electron populations 1.69898 1.06160 1.27033 1.49791 1.24821 0.94665 0.98669 0.94449 0.86993 0.80169 0.84022 0.79175 1.19758 1.21123 1.19066 1.21260 0.89169 0.94925 1.51334 0.90672 1.19870 0.96348 0.76953 0.97758 1.46818 1.66607 1.15497 1.01912 1.20149 0.93706 0.97549 0.82622 1.21162 0.99227 0.95556 0.99483 1.21464 0.92095 0.99365 0.92665 1.22046 0.98606 0.96108 1.02665 1.22639 0.97322 0.92154 0.94432 1.67668 1.02831 1.39525 1.10588 1.22717 0.93967 0.92158 0.95275 1.17921 0.76468 0.83143 0.81261 1.90879 1.55512 1.15395 1.87036 1.86391 1.85621 1.40581 1.13528 1.23466 1.03448 0.92692 0.82675 1.22100 0.89583 0.90877 0.96332 1.92785 1.60328 1.69180 1.97177 0.92492 0.94630 0.94575 0.89416 0.89279 0.84736 0.85242 0.83530 0.82794 0.90540 0.89814 0.88735 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 19.92 27.48 -169.99 -4.67 15.25 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -5.70 6.58 56.52 0.37 -5.33 16 7 C -0.53 -13.82 9.88 -34.44 -0.34 -14.16 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.21 4.69 4.28 -5.20 -0.02 4.67 16 10 N -0.57 -11.60 2.45 -182.25 -0.45 -12.04 16 11 C 0.18 3.07 5.56 -5.20 -0.03 3.05 16 12 C -0.15 -2.71 5.48 -104.48 -0.57 -3.28 16 13 C -0.03 -0.52 9.86 -39.28 -0.39 -0.90 16 14 C -0.17 -2.87 10.11 -39.44 -0.40 -3.27 16 15 C 0.09 1.51 11.18 -17.55 -0.20 1.32 16 16 N -0.50 -9.23 10.36 -13.25 -0.14 -9.36 16 17 C 0.12 2.14 10.76 -17.55 -0.19 1.95 16 18 C 0.66 13.75 8.33 54.05 0.45 14.20 16 19 O -0.60 -12.59 15.00 -19.28 -0.29 -12.87 16 20 O -0.35 -7.03 9.11 -40.33 -0.37 -7.39 16 21 C 0.05 0.81 5.96 37.16 0.22 1.03 16 22 C 0.07 0.83 7.93 37.16 0.29 1.13 16 23 F -0.21 -3.34 17.35 2.25 0.04 -3.30 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.04 0.82 7.03 -51.92 -0.37 0.45 16 26 H 0.04 0.76 6.80 -51.93 -0.35 0.40 16 27 H 0.09 1.36 7.45 -51.93 -0.39 0.98 16 28 H 0.09 1.28 7.81 -51.93 -0.41 0.87 16 29 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 32 H 0.15 2.80 7.41 -52.49 -0.39 2.42 16 33 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -32.28 320.86 -5.97 -38.26 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.44 Total: 3.82 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.27 Total: 7.70 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.19 Total: -46.30 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.66 Total: -20.27 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.28 -5.97 -38.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858883400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.779 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds